A global analysis of matches and mismatches between human genetic and linguistic histories

Authors: Barbieri, Chiara, Blasi, Damián E., Arango-Isaza, Epifanía, Sotiropoulos, Alexandros G., Hammarström, Harald, Wichmann, Søren, Greenhill, Simon J., Gray, Russell D., Forkel, Robert, Bickel, Balthasar, Shimizu, Kentaro K.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2022 Nov . 119(47), 1-9.

Access URL: https://www.jstor.org/stable/27208552

Hyper-Cryptic radiation of a tropical montane plant lineage

Authors: Olivares, Ingrid ^{a, ⁎}, Tusso, Sergio ^b, José Sanín, María ^{c, d}, de La Harpe, Marylaure ^e, Loiseau, Oriane ^f, Rolland, Jonathan ^g, Salamin, Nicolas ^h, Kessler, Michael ⁱ, Shimizu, Kentaro K. ^{a, j, 1}, Paris, Margot ^{k, 1}

Source: In Molecular Phylogenetics and Evolution January 2024 190

Utility of commercial high‐resolution satellite imagery for monitoring general flowering in Sarawak, Borneo

Authors: Miura, Tomoaki, Tokumoto, Yuji, Shin, Nagai, Shimizu, Kentaro K., Pungga, Runi Anak Sylvester, Ichie, Tomoaki

Source: Ecological research. 38(3):386-402

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100182007112.0x000001&indx=1&recIds=ETOCvdc_100182007112.0x000001

The genetic history of the Southern Andes from present-day Mapuche ancestry

Authors: Arango-Isaza, Epifanía, Capodiferro, Marco Rosario, Aninao, María José, Babiker, Hiba, Aeschbacher, Simon, Achilli, Alessandro, Posth, Cosimo, Campbell, Roberto, Martínez, Felipe I., Heggarty, Paul, Sadowsky, Scott, Shimizu, Kentaro K., Barbieri, Chiara

Source: In Current Biology 10 July 2023 33(13):2602-2615

Robustness and the generalist niche of polyploid species: Genome shock or gradual evolution?

Authors: Shimizu, Kentaro K.

Source: In Current Opinion in Plant Biology October 2022 69

Polyploidy before and after domestication of crop species

Authors: Akagi, Takashi, Jung, Katharina, Masuda, Kanae, Shimizu, Kentaro K.

Source: In Current Opinion in Plant Biology October 2022 69

Corrigendum

Authors: Akiyama, Reiko, Briskine, Roman V., Gan, Xiangchao, Hatakeyama, Masaomi, Kudoh, Hiroshi, Lischer, Heidi E. L., Sese, Jun, Shimizu, Kentaro K., Shimizu-Inatsugi, Rie, Sun, Jianqiang

Source: The New Phytologist, 2021 Jul 01. 231(1), 500-500.

Access URL: https://www.jstor.org/stable/27050103

Fine-scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species

Authors: Akiyama, Reiko, Sun, Jianqiang, Hatakeyama, Masaomi, Lischer, Heidi E. L., Briskine, Roman V., Hay, Angela, Gan, Xiangchao, Tsiantis, Miltos, Kudoh, Hiroshi, Kanaoka, Masahiro M., Sese, Jun, Shimizu, Kentaro K., Shimizu-Inatsugi, Rie

Source: The New Phytologist, 2021 Mar 01. 229(6), 3587-3601.

Access URL: https://www.jstor.org/stable/27001323

Fermentation Ability of Gut Microbiota of Wild Japanese Macaques in the Highland and Lowland Yakushima : In Vitro Fermentation Assay and Genetic Analyses

Authors: Hanya, Goro, Tackmann, Janko, Sawada, Akiko, Lee, Wanyi, Pokharel, Sanjeeta Sharma, de Castro Maciel, Valdevino Gisele, Toge, Akito, Kuroki, Kota, Otsuka, Ryoma, Mabuchi, Ryoma, Liu, Jie, Hatakeyama, Masaomi, Yamasaki, Eri, von Mering, Christian, Shimizu-Inatsugi, Rie, Hayakawa, Takashi, Shimizu, Kentaro K., Ushida, Kazunari

Source: Microbial Ecology, 2020 Aug 01. 80(2), 459-474.

Access URL: https://www.jstor.org/stable/48740085

Using a two-stage convolutional neural network to rapidly identify tiny herbivorous beetles in the field

Authors: Takimoto, Hironori, Sato, Yasuhiro, Nagano, Atsushi J., Shimizu, Kentaro K., Kanagawa, Akihiro

Source: In Ecological Informatics December 2021 66

Natural neopolyploids: a stimulus for novel research.

Authors: Edger, Patrick P., Soltis, Douglas E., Yoshioka, Shunsuke, Vallejo‐Marin, Mario, Shimizu‐Inatsugi, Rie, Shimizu, Kentaro K., Salmon, Armel, Hiscock, Simon, Ainouche, Malika, Soltis, Pamela S.

Source: New Phytologist; Apr2025, Vol. 246 Issue 1, p78-93, 16p

Subject Terms: GENETIC variation, CROP improvement, GENE expression, POLYPLOIDY, CROP yields

Metal accumulation and its effect on leaf herbivory in an allopolyploid species Arabidopsis kamchatica inherited from a diploid hyperaccumulator A. halleri

Authors: Shimizu‐Inatsugi, Rie, Milosavljevic, Silvija, Shimizu, Kentaro K., Schaepman‐Strub, Gabriela, Tanoi, Keitaro, Sato, Yasuhiro

Source: Plant species biology. 36(2):208-217

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100125382072.0x000001&indx=1&recIds=ETOCvdc_100125382072.0x000001

Reducing herbivory in mixed planting by genomic prediction of neighbor effects in the field.

Authors: Sato, Yasuhiro, Shimizu-Inatsugi, Rie, Takeda, Kazuya, Schmid, Bernhard, Nagano, Atsushi J., Shimizu, Kentaro K.

Source: Nature Communications; 10/7/2024, Vol. 15 Issue 1, p1-14, 14p

Subject Terms: GENOME-wide association studies, ISING model, CROP yields, ARABIDOPSIS thaliana, PLANT species

Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species

Authors: Rellstab, Christian, Zoller, Stefan, Sailer, Christian, Tedder, Andrew, Gugerli, Felix, Shimizu, Kentaro K., Holderegger, Rolf, Widmer, Alex, Fischer, Martin C.

Source: Molecular ecology. 29(22):4350-4365

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100111899038.0x000001&indx=1&recIds=ETOCvdc_100111899038.0x000001

Pollen Grain Counting Using a Cell Counter

Authors: Kakui, Hiroyuki, Yamazaki, Misako, Hamaya, Naoto-Benjamin, Shimizu, Kentaro K.

Source: Methods in molecular biology. 2160:1-12

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN624459293&indx=1&recIds=ETOCRN624459293

Artificial selection reveals the role of transcriptional constraints in the maintenance of life history variation

Authors: Pick, Joel L., Hatakeyama, Masaomi, Ihle, Kate E., Gasparini, Julien, Haussy, Claudy, Ishishita, Satoshi, Matsuda, Yoichi, Yoshimura, Takashi, Kanaoka, Masahiro M., Shimizu‐Inatsugi, Rie, Shimizu, Kentaro K., Tschirren, Barbara

Source: Evolution letters. 4(3):200-211

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100107505224.0x000001&indx=1&recIds=ETOCvdc_100107505224.0x000001

De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium-Resistant Genes in East Asian Genotypes

Authors: Shimizu, Kentaro K, Copetti, Dario, Okada, Moeko, Wicker, Thomas, Tameshige, Toshiaki, Hatakeyama, Masaomi, Shimizu-Inatsugi, Rie, Aquino, Catharine, Nishimura, Kazusa, Kobayashi, Fuminori, Murata, Kazuki, Kuo, Tony, Delorean, Emily, Poland, Jesse, Haberer, Georg, Spannagl, Manuel, Mayer, Klaus F X, Gutierrez-Gonzalez, Juan, Muehlbauer, Gary J, Monat, Cecile, Himmelbach, Axel, Padmarasu, Sudharsan, Mascher, Martin, Walkowiak, Sean, Nakazaki, Tetsuya, Ban, Tomohiro, Kawaura, Kanako, Tsuji, Hiroyuki, Pozniak, Curtis, Stein, Nils, Sese, Jun, Nasuda, Shuhei, Handa, Hirokazu

Source: Plant & cell physiology. 62(1):8-27

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100128214518.0x000001&indx=1&recIds=ETOCvdc_100128214518.0x000001

Evolutionary and Ecological Genomics of Arabidopsis

Authors: Shimizu, Kentaro K., Purugganan, Michael D.

Source: Plant Physiology, 2005 Jun 01. 138(2), 578-584.

Access URL: https://www.jstor.org/stable/4629864

A stigmatic gene confers interspecies incompatibility in the Brassicaceae

Authors: Fujii, Sota, Tsuchimatsu, Takashi, Kimura, Yuka, Ishida, Shota, Tangpranomkorn, Surachat, Shimosato-Asano, Hiroko, Iwano, Megumi, Furukawa, Shoko, Itoyama, Wakana, Wada, Yuko, Shimizu, Kentaro K., Takayama, Seiji

Source: Nature plants. 5(7):731-741

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131039804.0x000001&indx=1&recIds=ETOCvdc_100131039804.0x000001

The Current Genomic Landscape of Western South America: Andes, Amazonia, and Pacific Coast

Authors: Barbieri, Chiara, Barquera, Rodrigo, Arias, Leonardo, Sandoval, José R, Acosta, Oscar, Zurita, Camilo, Aguilar-Campos, Abraham, Tito-Álvarez, Ana M, Serrano-Osuna, Ricardo, Gray, Russell D, Mafessoni, Fabrizio, Heggarty, Paul, Shimizu, Kentaro K, Fujita, Ricardo, Stoneking, Mark, Pugach, Irina, Fehren-Schmitz, Lars

Source: Molecular biology and evolution. 36(12):2698-2713

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100096837322.0x000001&indx=1&recIds=ETOCvdc_100096837322.0x000001