High-mobility group box-1 peptide ameliorates bronchopulmonary dysplasia by suppressing inflammation and fibrosis in a mouse model

Authors: Hara, Takeya, Shimbo, Takashi, Masuda, Tatsuo, Kitayama, Tomomi, Fujii, Makoto, Hanawa, Morifumi, Yokota, Kazuha, Endo, Masayuki, Tomimatsu, Takuji, Kimura, Tadashi, Tamai, Katsuto

Source: Biochemical and biophysical research communications. 671:357-365

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100194246668.0x000001&indx=1&recIds=ETOCvdc_100194246668.0x000001

Generation of a recessive dystrophic epidermolysis bullosa mouse model with patient-derived compound heterozygous mutations

Authors: Takaki, Satoshi, Shimbo, Takashi, Ikegami, Kentaro, Kitayama, Tomomi, Yamamoto, Yukari, Yamazaki, Sho, Mori, Shiho, Tamai, Katsuto

Source: In Laboratory Investigation June 2022 102(6):574-580

Proteins That Read DNA Methylation

Authors: Liu, Ke, Shimbo, Takashi, Song, Xiaosheng, Wade, Paul A., Min, Jinrong

Source: Advances in experimental medicine and biology. 1389:269-294

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN630923072&indx=1&recIds=ETOCRN630923072

Synthesized HMGB1 peptide prevents the progression of inflammation, steatosis, fibrosis, and tumor occurrence in a non‐alcoholic steatohepatitis mouse model

Authors: Ishii, Yui, Tsuchiya, Atsunori, Natsui, Kazuki, Koseki, Youhei, Takeda, Nobutaka, Tomiyoshi, Kei, Yamazaki, Fusako, Yoshida, Yuki, Shimbo, Takashi, Tamai, Katsuto, Terai, Shuji

Source: Hepatology research. 52(12):985-997

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100169752312.0x000001&indx=1&recIds=ETOCvdc_100169752312.0x000001

Single‐cell transcriptome analysis of fractional CO2 laser efficiency in treating a mouse model of alopecia

Authors: Hasegawa, Kouichi, Fujimoto, Takahiro, Mita, Chihiro, Furumoto, Hidehiro, Inoue, Masako, Ikegami, Kentaro, Kitayama, Tomomi, Yamamoto, Yukari, Shimbo, Takashi, Yamazaki, Takehiko, Tamai, Katsuto

Source: Lasers in surgery and medicine. 54(8):1167-1176

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164983698.0x000001&indx=1&recIds=ETOCvdc_100164983698.0x000001

Controlled induction of immune tolerance by mesenchymal stem cells transferred by maternal microchimerism

Authors: Iwai, Sayuri, Okada, Aiko, Sasano, Kei, Endo, Masayuki, Yamazaki, Sho, Wang, Xin, Shimbo, Takashi, Tomimatsu, Takuji, Kimura, Tadashi, Tamai, Katsuto

Source: Biochemical and biophysical research communications. 539:83-88

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100133691564.0x000001&indx=1&recIds=ETOCvdc_100133691564.0x000001

Contribution of PDGFRα lineage cells in adult mouse hematopoiesis

Authors: Miura, Asaka, Shimbo, Takashi, Kitayama, Tomomi, Ouchi, Yuya, Yamazaki, Sho, Nishida, Mami, Takaki, Eiichi, Yamamoto, Ryoma, Wijaya, Edward, Tamai, Katsuto

Source: Biochemical and biophysical research communications. 534:186-192

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100120430177.0x000001&indx=1&recIds=ETOCvdc_100120430177.0x000001

Fibroblasts fluctuating between mesenchyme and epithelium are involved in hair follicle mesenchyme development

Authors: Hirose, Yoshikazu ^a, Miura, Asaka ^a, Ouchi, Yuya ^{a, b}, Kitayama, Tomomi ^{a, b}, Omura, Souki ^c, Shimbo, Takashi ^{a, d}, Tanaka, Akio ^e, Fujimoto, Manabu ^f, Saga, Kotaro ^a, Tamai, Katsuto ^{a, b, ⁎}

Source: In Biochemistry and Biophysics Reports June 2025 42

Evaluation of the digestion protocol of mouse neonatal epidermis for single-cell RNA sequencing

Authors: Miura, Asaka ^a, Kitayama, Tomomi ^b, Ouchi, Yuya ^b, Saga, Kotaro ^a, Shimbo, Takashi ^{a, c, ⁎}, Tamai, Katsuto ^{a, b, ⁎⁎}

Source: In Biochemical and Biophysical Research Communications January 2025 743

CHD4 and the NuRD complex directly control cardiac sarcomere formation

Authors: Wilczewski, Caralynn M., Hepperla, Austin J., Shimbo, Takashi, Wasson, Lauren, Robbe, Zachary L., Davis, Ian J., Wade, Paul A., Conlon, Frank L.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2018 Jun . 115(26), 6727-6732.

Access URL: https://www.jstor.org/stable/26510805

Single-cell transcriptomic profiling of lung fibroblasts in a bleomycin-induced systemic sclerosis mouse model

Authors: Maekawa, Aya, Ueda-Hayakawa, Ikuko, Shimbo, Takashi, Yamazaki, Sho, Ouchi, Yuya, Kitayama, Tomomi, Tamai, Katsuto, Fujimoto, Manabu

Source: In Biochemical and Biophysical Research Communications 31 December 2024 741

A Novel Quantitative Evaluation of Bone Formation After Opening Wedge High Tibial Osteotomy Using Tomosynthesis.

Authors: Ishibashi, Kyota^1,2, kyota.i@hirosaki-u.ac.jp, Sasaki, Eiji¹, Wijaya, Edward³, Yamauchi, Shohei¹, Sasaki, Shizuka¹, Kimura, Yuka¹, Yamamoto, Yuji¹, Shimbo, Takashi^2,4, Tamai, Katsuto², Ishibashi, Yasuyuki¹

Source: Journal of Digital Imaging; Oct2022, Vol. 35 Issue 5, p1373-1381, 9p, 2 Black and White Photographs, 3 Charts, 3 Graphs

Transcriptionally distinct mesenchymal stem/stromal cells circulate in fetus

Authors: Okada, Aiko, Shimbo, Takashi, Endo, Masayuki, Iwai, Sayuri, Kitayama, Tomomi, Ouchi, Yuya, Yamamoto, Ryoma, Takaki, Eiichi, Yamazaki, Sho, Nishida, Mami, Wang, Xin, Kikuchi, Yasushi, Tomimatsu, Takuji, Kaneda, Yasufumi, Kimura, Tadashi, Tamai, Katsuto

Source: Biochemical and biophysical research communications. 512(2):326-330

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100081939966.0x000001&indx=1&recIds=ETOCvdc_100081939966.0x000001

Cut-C: cleavage under tethered nuclease for conformational capture

Authors: Shimbo, Takashi, Kawamura, Machika, Wijaya, Edward, Takaki, Eiichi, Kaneda, Yasufumi, Tamai, Katsuto

Source: BMC genomics. 20(1):1-6

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100189330097.0x000001&indx=1&recIds=ETOCvdc_100189330097.0x000001

DNA methylation in mice is influenced by genetics as well as sex and life experience

Authors: Grimm, Sara, Shimbo, Takashi, Takaku, Motoki, Thomas, James, Auerbach, Scott, Bennett, Brian, Bucher, John, Burkholder, Adam, Day, Frank, Du, Ying, Duncan, Christopher, French, John, Foley, Julie, Li, Jianying, Merrick, B., Tice, Raymond, Wang, Tianyuan, Xu, Xiaojiang, Bushel, Pierre, Fargo, David, Mullikin, James, Wade, Paul

Source: Nature communications. 10(1):1-13

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100111622129.0x000001&indx=1&recIds=ETOCvdc_100111622129.0x000001

Chromatin accessibility identifies diversity in mesenchymal stem cells from different tissue origins

Authors: Ho, Yen-Ting, Shimbo, Takashi, Wijaya, Edward, Ouchi, Yuya, Takaki, Eiichi, Yamamoto, Ryoma, Kikuchi, Yasushi, Kaneda, Yasufumi, Tamai, Katsuto

Source: Scientific reports. 8(1):1-11

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100099972431.0x000001&indx=1&recIds=ETOCvdc_100099972431.0x000001

Genomic transcription factor binding site selection is edited by the chromatin remodeling factor CHD4.

Authors: Saotome, Mika, Poduval, Deepak B, Grimm, Sara A, Nagornyuk, Aerica, Gunarathna, Sakuntha, Shimbo, Takashi, Wade, Paul A, Takaku, Motoki

Source: Nucleic Acids Research; 4/24/2024, Vol. 52 Issue 7, p3607-3622, 16p

INO80 Facilitates Pluripotency Gene Activation in Embryonic Stem Cell Self-Renewal, Reprogramming, and Blastocyst Development

Authors: Wang, Li, Du, Ying, Ward, James M., Shimbo, Takashi, Lackford, Brad, Zheng, Xiaofeng, Miao, Yi-liang, Zhou, Bingying, Han, Leng, Fargo, David C., Jothi, Raja, Williams, Carmen J., Wade, Paul A., Hu, Guang

Source: In Cell Stem Cell 1 May 2014 14(5):575-591

Single-cell transcriptome analysis of a rat model of bilateral renal ischemia-reperfusion injury

Authors: Taniguchi, Ayumu, Miyashita, Kazuya, Fukae, Shota, Tanaka, Ryo, Nishida, Mami, Kitayama, Tomomi, Ouchi, Yuya, Shimbo, Takashi, Nakazawa, Shigeaki, Yamanaka, Kazuaki, Imamura, Ryoichi, Tamai, Katsuto, Nonomura, Norio

Source: In Biochemistry and Biophysics Reports March 2023 33

Proteins That Read DNA Methylation

Authors: Shimbo, Takashi, Wade, Paul A.

Source: Advances in experimental medicine and biology. 945:303-320

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN609039164&indx=1&recIds=ETOCRN609039164