Integrated multiomics signatures to optimize the accurate diagnosis of lung cancer

Authors: Mengmeng Zhao, Gang Xue, Bingxi He, Jiajun Deng, Tingting Wang, Yifan Zhong, Shenghui Li, Yang Wang, Yiming He, Tao Chen, Jun Zhang, Ziyue Yan, Xinlei Hu, Liuning Guo, Wendong Qu, Yongxiang Song, Minglei Yang, Guofang Zhao, Bentong Yu, Minjie Ma, Lunxu Liu, Xiwen Sun, Yunlang She, Dan Xie, Deping Zhao, Chang Chen

Source: Nature Communications, Vol 16, Iss 1, Pp 1-16 (2025)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/d64a9048c128445ab8737092ff591650

A population-scale analysis of 36 gut microbiome studies reveals universal species signatures for common diseases

Authors: Wen Sun, Yue Zhang, Ruochun Guo, Shanshan Sha, Changming Chen, Hayan Ullah, Yan Zhang, Jie Ma, Wei You, Jinxin Meng, Qingbo Lv, Lin Cheng, Shao Fan, Rui Li, Xiaohong Mu, Shenghui Li, Qiulong Yan

Source: npj Biofilms and Microbiomes, Vol 10, Iss 1, Pp 1-10 (2024)

Subject Terms: Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://doaj.org/toc/2055-5008

Access URL: https://doaj.org/article/429b721fddb74892beeede93cc6f37f2

Fostering diversity, equity, and inclusion in interdisciplinary marine science

Authors: Laura Kaikkonen, Rebecca J. Shellock, Samiya Ahmed Selim, Renis Auma Ojwala, Beatriz S. Dias, Shenghui Li, Charles I. Addey, Ignacio Gianelli, Katherine M. Maltby, Sara Garcia-Morales, Juliano Palacios-Abrantes, Shan Jiang, Marta Albo-Puigserver, Virginia A. García Alonso, Chelsey A. Baker, Colleen B. Bove, Stephanie Brodie, Lol Iana Dahlet, Jewel Das, Aislinn Dunne, Sebastian C. A. Ferse, Ellen Johannesen, Julia Jung, Eugenia Merayo Garcia, Denis B. Karcher, Sarah Mahadeo, Lucia Millan, Kasali Oladepo Lawal, Ayodele Oloko, Kelly Ortega-Cisneros, Stephanie Otoabasi-Akpan, Durlave Roy, Samina Sharmin Rouf, Szymon Smoliński, Natasa Vaidianu, Chris Whidden, Mia Strand

Source: npj Ocean Sustainability, Vol 3, Iss 1, Pp 1-8 (2024)

Subject Terms: Oceanography, GC1-1581, Environmental sciences, GE1-350

File Description: electronic resource

Relation: https://doaj.org/toc/2731-426X

Access URL: https://doaj.org/article/322fe43f19ff4c2494e4333522abce73

Temporal variability in the diversity, function and resistome landscapes in the gut microbiome of broilers

Authors: Jin-Xin Meng, Ming-Han Li, Xiang-Yu Wang, Shenghui Li, Yue Zhang, Hong-Bo Ni, He Ma, Rui Liu, Jin-Chu Yan, Xiao-Man Li, Yu-Zhe Sun, Xing Yang, Xiao-Xuan Zhang

Source: Ecotoxicology and Environmental Safety, Vol 292, Iss , Pp 117976- (2025)

Subject Terms: Metagenomics, Culturomics, Broiler, Gut microbiota, Temporal fluctuation, Resistome, Environmental pollution, TD172-193.5, Environmental sciences, GE1-350

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0147651325003124; https://doaj.org/toc/0147-6513

Access URL: https://doaj.org/article/535ce63215c4496182e7fdbb0a7578e5

Gut mycobiome alterations and network interactions with the bacteriome in patients with atherosclerotic cardiovascular disease

Authors: Guangming Su, Ping Huang, Dan Liu, Guorui Xing, Ruochun Guo, Shenghui Li, Shao Fan, Lin Cheng, Qiulong Yan, Wei Yang

Source: Microbiology Spectrum, Vol 13, Iss 1 (2025)

Subject Terms: atherosclerotic cardiovascular disease, gut mycobiome, gut bacteriome, shotgun metagenome sequencing, network interaction, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/bf8ef9aabdc144a597dfc208b4db67e5

Identification and functional characteristics of CHD1L gene variants implicated in human Müllerian duct anomalies

Authors: Shuya Chen, Yali Fan, Yujun Sun, Shenghui Li, Zhi Zheng, Chunfang Chu, Lin Li, Chenghong Yin

Source: Biological Research, Vol 57, Iss 1, Pp 1-17 (2024)

Subject Terms: Müllerian duct anomaly, CHD1L, Genetic etiology, Whole exome sequencing, Functional assessment, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/0717-6287

Access URL: https://doaj.org/article/3121fca16f0b4e92b7975d7645870a16

Gut virome-wide association analysis identifies cross-population viral signatures for inflammatory bowel disease

Authors: Xiangge Tian, Shenghui Li, Chao Wang, Yanyan Zhang, Xiaoying Feng, Qiulong Yan, Ruochun Guo, Fan Wu, Chunxue Wu, Yan Wang, Xiaokui Huo, Xiaochi Ma

Source: Microbiome, Vol 12, Iss 1, Pp 1-20 (2024)

Subject Terms: Gut virome, Inflammatory bowel disease, Viral-like particle virome, Bulk virome, Viral signatures, IBD-characterized viruses, Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://doaj.org/toc/2049-2618

Access URL: https://doaj.org/article/67134d524c2e4270bc8ae8e37be24c22

Inhibition of S100A8/A9 ameliorates neuroinflammation by blocking NET formation following traumatic brain injury

Authors: Guihong Shi, Yiyao Cao, Jianye Xu, Bo Chen, Xu Zhang, Yanlin Zhu, Liang Liu, Xilei Liu, Luyuan Zhang, Yuan Zhou, Shenghui Li, Guili Yang, Xiao Liu, Fanglian Chen, Xin Chen, Jianning Zhang, Shu Zhang

Source: Redox Biology, Vol 81, Iss , Pp 103532- (2025)

Subject Terms: S100A8/A9, Paquinimod, Neuroinflammation, Neutrophil extracellular traps, ROS, Traumatic brain injury, Medicine (General), R5-920, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S221323172500045X; https://doaj.org/toc/2213-2317

Access URL: https://doaj.org/article/ed93aadf6a2949218e7746431b2c101b

Metagenome-based characterization of the gut bacteriome, mycobiome, and virome in patients with chronic hepatitis B-related liver fibrosis

Authors: Wenlin Chen, Fang Liang, Yue Zhang, Yuncheng Zhang, Jinzhen Lv, Xiande Jin, Yun Ran, Shenghui Li, Wen Sun

Source: Frontiers in Microbiology, Vol 15 (2024)

Subject Terms: chronic hepatitis B-related liver fibrosis, gut microbiome, microbial dysbiosis, gut mycobiome, gut virome, whole-metagenome sequencing, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2024.1449090/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/d001faf00d084233b0d831907e8fc0f2

Influence of gender, age, and body mass index on the gut microbiota of individuals from South China

Authors: Shenghui Li, Shao Fan, Yufang Ma, Chuan Xia, Qiulong Yan

Source: Frontiers in Cellular and Infection Microbiology, Vol 14 (2024)

Subject Terms: gut microbiota, gender, age, body mass index (BMI), metagenomics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2024.1419884/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/0c0af425cca04b1cbbafa7f6a200416b

Ozone Exposure and Gestational Diabetes in Twin Pregnancies: Exploring Critical Windows and Synergistic Risks

Authors: Anda Zhao, Yuanqing Xia, Ruoyu Lu, Wenhui Kang, Lili Huang, Renyi Hua, Shuping Lyu, Yan Zhao, Jianyu Chen, Yanlin Wang, Shenghui Li

Source: Toxics, Vol 13, Iss 2, p 117 (2025)

Subject Terms: ozone, gestational diabetes mellitus, twin pregnancies, distributed lag non-linear models, critical windows, Chemical technology, TP1-1185

File Description: electronic resource

Relation: https://www.mdpi.com/2305-6304/13/2/117; https://doaj.org/toc/2305-6304

Access URL: https://doaj.org/article/3dd4174eedeb4a99a4bdbadb915404ff

Comparative analysis of the vaginal bacteriome and virome in healthy women living in high-altitude and sea-level areas

Authors: Chaoran Li, Song jin, Oingbo Lv, Guangyang Wang, Yue Zhang, Shenghui Li, Wei zhang, Fang Long, Zhuowei Shen, Siqi Bai, Duoii Zhaxi, Fandou Kong, Qiulong Yan, Zhen Xiao

Source: European Journal of Medical Research, Vol 29, Iss 1, Pp 1-11 (2024)

Subject Terms: Vaginal microbiome, Whole-metagenome shotgun sequencing, High-altitude area, Bacteriome, Virome, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/2047-783X

Access URL: https://doaj.org/article/0f1c970b83414b028ca960955f62fa22

Integrative metagenomic and metabolomic analyses reveal the potential of gut microbiota to exacerbate acute pancreatitis

Authors: Jianjun Liu, Qiulong Yan, Shenghui Li, Juying Jiao, Yiming Hao, Guixin Zhang, Qingkai Zhang, Fei Luo, Yue Zhang, Qingbo Lv, Wenzhe Zhang, Aiqin Zhang, Huiyi Song, Yi Xin, Yufang Ma, Lawrence Owusu, Xiaochi Ma, Peiyuan Yin, Dong Shang

Source: npj Biofilms and Microbiomes, Vol 10, Iss 1, Pp 1-14 (2024)

Subject Terms: Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://doaj.org/toc/2055-5008

Access URL: https://doaj.org/article/a293d1ec624141a193f1711c5c165ce5

Altered gut mycobiome in patients with end-stage renal disease and its correlations with serum and fecal metabolomes

Authors: Yi Ren, Lei Chen, Ruochun Guo, Shiyang Ma, Shenghui Li, Yue Zhang, Hongli Jiang, Haitao Shi, Pan Zhang

Source: Journal of Translational Medicine, Vol 22, Iss 1, Pp 1-11 (2024)

Subject Terms: End-stage renal disease, Gut mycobiome, Shotgun metagenome sequencing, Serum metabolome, Fecal metabolome, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/1479-5876

Access URL: https://doaj.org/article/75361a0fb296431eb5232b2de528df49

An Improved Gaussian Sum Extended Kalman Filter With Colored Noise for GNSS/SINS Tightly Coupled Positioning and Attitude Determination Systems

Authors: Qing Dai, Guorui Xiao, Ru Wan, Shenghui Li

Source: IEEE Access, Vol 12, Pp 73279-73291 (2024)

Subject Terms: Colored noise, extended Kalman filter, Gaussian sum filter, GNSS/SINS tightly coupled positioning and attitude determination systems, non-Gaussian noise, unmanned aerial vehicles, Electrical engineering. Electronics. Nuclear engineering, TK1-9971

File Description: electronic resource

Relation: https://ieeexplore.ieee.org/document/10536898/; https://doaj.org/toc/2169-3536

Access URL: https://doaj.org/article/b6fd2e131335431e990bff9b4d31d699

A Study on a Spatiotemporal Entity-Based Event Data Model

Authors: Mingming Wang, Jiangshui Zhang, Yibing Cao, Shenghui Li, Minjie Chen

Source: ISPRS International Journal of Geo-Information, Vol 13, Iss 10, p 360 (2024)

Subject Terms: spatiotemporal entity, event data model, change processes, event dynamics, hierarchical structure, the Long March, Geography (General), G1-922

File Description: electronic resource

Relation: https://www.mdpi.com/2220-9964/13/10/360; https://doaj.org/toc/2220-9964

Access URL: https://doaj.org/article/e4da67006d4942e5bce7f9c8768c36c8

Characterizations of the multi-kingdom gut microbiota in Chinese patients with gouty arthritis

Authors: Changming Chen, Yue Zhang, Xueming Yao, Qiulong Yan, Shenghui Li, Qin Zhong, Zhengqi Liu, Fang Tang, Can Liu, Hufan Li, Dan Zhu, Weiya Lan, Yi Ling, Daomin Lu, Hui Xu, Qiaoyi Ning, Ying Wang, Zong Jiang, Qiongyu Zhang, Guangzhao Gu, Liping Sun, Nan Wang, Guangyang Wang, Aiqin Zhang, Hayan Ullah, Wen Sun, Wukai Ma

Source: BMC Microbiology, Vol 23, Iss 1, Pp 1-13 (2023)

Subject Terms: Gouty arthritis, Whole-metagenome shotgun sequencing, Gut bacteriome, Gut mycobiome, Gut virome, Microbiota dysbiosis, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2180

Access URL: https://doaj.org/article/ebce7fc996a244ce9d0334b744f571fc

Metagenome-wide analysis uncovers gut microbial signatures and implicates taxon-specific functions in end-stage renal disease

Authors: Pan Zhang, Xifan Wang, Shenghui Li, Xuesen Cao, Jianzhou Zou, Yi Fang, Yiqin Shi, Fangfang Xiang, Bo Shen, Yixuan Li, Bing Fang, Yue Zhang, Ruochun Guo, Qingbo Lv, Liwen Zhang, Yufei Lu, Yaqiong Wang, Jinbo Yu, Yeqing Xie, Ran Wang, Xiaohong Chen, Jiawei Yu, Zhen Zhang, Jingjing He, Jing Zhan, Wenlv Lv, Yuxin Nie, Jieru Cai, Xialian Xu, Jiachang Hu, Qi Zhang, Ting Gao, Xiaotian Jiang, Xiao Tan, Ning Xue, Yimei Wang, Yimei Ren, Li Wang, Han Zhang, Yichun Ning, Jing Chen, Lin Zhang, Shi Jin, Fazheng Ren, Stanislav Dusko Ehrlich, Liang Zhao, Xiaoqiang Ding

Source: Genome Biology, Vol 24, Iss 1, Pp 1-22 (2023)

Subject Terms: Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/d2c0bf58f4584df99b95b2eeb3f8bc83

Inhibition of neutrophil extracellular trap formation ameliorates neuroinflammation and neuronal apoptosis via STING-dependent IRE1α/ASK1/JNK signaling pathway in mice with traumatic brain injury

Authors: Guihong Shi, Liang Liu, Yiyao Cao, Guangshuo Ma, Yanlin Zhu, Jianye Xu, Xu Zhang, Tuo Li, Liang Mi, Haoran Jia, Yanfeng Zhang, Xilei Liu, Yuan Zhou, Shenghui Li, Guili Yang, Xiao Liu, Fanglian Chen, Baolong Wang, Quanjun Deng, Shu Zhang, Jianning Zhang

Source: Journal of Neuroinflammation, Vol 20, Iss 1, Pp 1-28 (2023)

Subject Terms: Neutrophil extracellular traps, Cl-amidine, Neuroinflammation, Neuronal apoptosis, STING, IRE1α, Neurology. Diseases of the nervous system, RC346-429

File Description: electronic resource

Relation: https://doaj.org/toc/1742-2094

Access URL: https://doaj.org/article/fd6f2db45e0b4fd99d70f58164c57d20

Meta-analysis of fecal viromes demonstrates high diagnostic potential of the gut viral signatures for colorectal cancer and adenoma risk assessment

Authors: Fang Chen, Shenghui Li, Ruochun Guo, Fanghua Song, Yue Zhang, Xifan Wang, Xiaokui Huo, Qingbo Lv, Hayan Ullah, Guangyang Wang, Yufang Ma, Qiulong Yan, Xiaochi Ma

Source: Journal of Advanced Research, Vol 49, Iss , Pp 103-114 (2023)

Subject Terms: Colorectal cancer, Gut virome, Diagnostic virome signature, Risk assessment model, Machine learning, Meta-analysis, Medicine (General), R5-920, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2090123222002144; https://doaj.org/toc/2090-1232

Access URL: https://doaj.org/article/72789ad183d44207b0745cf4b460712a