Mass Spectrometry-Based Precise Identification of Citrullinated Histones via Limited Digestion and Biotin Derivative Tag Enrichment

Authors: Wang, Bin, Li, Zihui, Shi, Yatao, Zhu, Zexin, Fields, Lauren, Shelef, Miriam A., Li, Lingjun

Source: ANALYTICAL CHEMISTRY -WASHINGTON DC-. 96(6):2309-2317

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN632790492&indx=1&recIds=ETOCRN632790492

MixTwice: large-scale hypothesis testing for peptide arrays by variance mixing

Authors: Zheng, Zihao, Mergaert, Aisha M., Ong, Irene M., Shelef, Miriam A., Newton, Michael A.

Source: Bioinformatics 2021

Subject Terms: Statistics - Methodology

Access URL: http://arxiv.org/abs/2011.07420

Novel and unique rheumatoid factors cross-react with viral epitopes in COVID-19

Authors: Amjadi, Maya F., Parker, Maxwell H., Adyniec, Ryan R., Zheng, Zihao, Robbins, Alex M., Bashar, S. Janna, Denny, Michael F., McCoy, Sara S., Ong, Irene M., Shelef, Miriam A.

Source: In Journal of Autoimmunity January 2024 142

Machine-learning-aided multiplexed nanoplasmonic biosensor for COVID-19 population immunity profilingElectronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d3sd00081h

Authors: Beisenova, Aidana, Adi, Wihan, Bashar, S. Janna, Velmurugan, Monniiesh, Germanson, Kenzie B., Shelef, Miriam A., Yesilkoy, Filiz

Source: Sensors & diagnostics. 2(5):1186-1198

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100192665496.0x000001&indx=1&recIds=ETOCvdc_100192665496.0x000001

Limited Biomarker Potential for IgG Autoantibodies Reactive to Linear Epitopes in Systemic Lupus Erythematosus or Spondyloarthropathy.

Authors: Bashar, S. Janna¹, janna.bashar@gmail.com, Zheng, Zihao^1,2, manewton@wisc.eduzihao.zheng@wisc.edu, Mergaert, Aisha M.^1,3, Adyniec, Ryan R.¹, Gupta, Srishti¹, Amjadi, Maya F.¹, McCoy, Sara S.¹, Newton, Michael A.^2,4, Shelef, Miriam A.^1,5, mshelef@medicine.wisc.edu

Source: Antibodies (2073-4468); Dec2024, Vol. 13 Issue 4, p87, 11p

Rapid COVID-19 immunity screening by machine learning aided multiplexed nanoplasmonic biosensor
Plasmonics: Design, Materials, Fabrication, Characterization, and Applications XXI

Authors: Beisenova, Aidana, Adi, Wihan, Bashar, S. Janna, Velmurugan, Monniiesh, Germanson, Kenzie B., Shelef, Miriam A., Yesilkoy, Filiz

Source: Proceedings of SPIE, the International Society for Optical Engineering. 12648:1264808-1264808-7

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN900071888&indx=1&recIds=ETOCCN900071888

Rheumatoid Factor and Anti–Modified Protein Antibody Reactivities Converge on IgG Epitopes

Authors: Mergaert, Aisha M., Zheng, Zihao, Denny, Michael F., Amjadi, Maya F., Bashar, S. Janna, Newton, Michael A., Malmström, Vivianne, Grönwall, Caroline, McCoy, Sara S., Shelef, Miriam A.

Source: Arthritis & rheumatology. 74(6):984-991

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100152405755.0x000001&indx=1&recIds=ETOCvdc_100152405755.0x000001

Rheumatoid arthritis-associated rheumatoid factors post-COVID-19.

Authors: Titi, Adam H., Krisko, Braedon T., Bashar, S. Janna, Adyniec, Ryan R., Parker, Maxwell H., Murren, Nat F., Myhr, Courtney B., Shelef, Miriam A.

Source: Frontiers in Immunology; 2025, p1-11, 11p

Subject Terms: RHEUMATOID factor, RHEUMATOID arthritis, IMMUNOLOGICAL tolerance, ENZYME-linked immunosorbent assay, AUTOANTIBODIES

MixTwice: large-scale hypothesis testing for peptide arrays by variance mixing

Authors: Zheng, Zihao, Mergaert, Aisha M., Ong, Irene M., Shelef, Miriam A., Newton, Michael A.

Source: Bioinformatics. 37(17):2637-2643

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100129279108.0x000001&indx=1&recIds=ETOCvdc_100129279108.0x000001

Disordered Antigens and Epitope Overlap Between Anti–Citrullinated Protein Antibodies and Rheumatoid Factor in Rheumatoid Arthritis

Authors: Zheng, Zihao, Mergaert, Aisha M., Fahmy, Lauren M., Bawadekar, Mandar, Holmes, Caitlyn L., Ong, Irene M., Bridges, Alan J., Newton, Michael A., Shelef, Miriam A.

Source: Arthritis & rheumatology. 72(2):262-272

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100116433097.0x000001&indx=1&recIds=ETOCvdc_100116433097.0x000001

The role of neutrophil extracellular traps and TLR signaling in skeletal muscle ischemia reperfusion injury

Authors: Edwards, Nicole J., Hwang, Charles, Marini, Simone, Pagani, Chase A., Spreadborough, Philip J., Rowe, Cassie J., Yu, Pauline, Mei, Annie, Visser, Noelle, Li, Shuli, Hespe, Geoffrey E., Huber, Amanda K., Strong, Amy L., Shelef, Miriam A., Knight, Jason S., Davis, Thomas A., Levi, Benjamin

Source: FASEB journal. 34(12):15753-15770

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100112223818.0x000001&indx=1&recIds=ETOCvdc_100112223818.0x000001

Novel autoantibodies help diagnose anti-SSA antibody negative Sjögren disease and predict abnormal labial salivary gland pathology.

Authors: Parker, Maxwell, Zihao Zheng, Lasarev, Michael R., Larsen, Michele C., Loo, Addie Vande, Alexandridis, Roxana A., Newton, Michael A., Shelef, Miriam A., McCoy, Sara S.

Source: Annals of the Rheumatic Diseases; Sep2024, Vol. 83, p1169-1180, 12p

New Relationships for Old Autoantibodies in Rheumatoid Arthritis

Authors: Shelef, Miriam A.

Source: Arthritis & rheumatology. 71(9):1396-1399

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100089380625.0x000001&indx=1&recIds=ETOCvdc_100089380625.0x000001

Peptidylarginine deiminase 2 is required for tumor necrosis factor alpha-induced citrullination and arthritis, but not neutrophil extracellular trap formation

Authors: Bawadekar, Mandar, Shim, Daeun, Johnson, Chad J., Warner, Thomas F., Rebernick, Ryan, Damgaard, Dres, Nielsen, Claus H., Pruijn, Ger J.M., Nett, Jeniel E., Shelef, Miriam A.

Source: In Journal of Autoimmunity June 2017 80:39-47

DNA Area and NETosis Analysis (DANA): a High-Throughput Method to Quantify Neutrophil Extracellular Traps in Fluorescent Microscope Images

Authors: Rebernick, Ryan, Fahmy, Lauren, Glover, Christopher, Bawadekar, Mandar, Shim, Daeun, Holmes, Caitlyn, Rademacher, Nicole, Potluri, Hemanth, Bartels, Christie, Shelef, Miriam

Source: Biological procedures online. 20(1):1-9

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100161803907.0x000001&indx=1&recIds=ETOCvdc_100161803907.0x000001

Macrophage extracellular traps require peptidylarginine deiminase 2 and 4 and are a source of citrullinated antigens bound by rheumatoid arthritis autoantibodies.

Authors: Bashar, S. Janna, Holmes, Caitlyn L., Shelef, Miriam A.

Source: Frontiers in Immunology; 2024, p1-11, 11p

Subject Terms: RHEUMATOID arthritis, AUTOANTIBODIES, ANTIGENS, MACROPHAGES, PERITONEAL macrophages

Microfluidic kit-on-a-lid: a versatile platform for neutrophil chemotaxis assays

Authors: Sackmann, Eric K. ^*, Berthier, Erwin ^*, Young, Edmond W.K., Shelef, Miriam A., Wernimont, Sarah A., Huttenlocher, Anna, Beebe, David J.

Source: In Blood 4 October 2012 120(14):e45-e53

Chapter 7 - Rheumatoid arthritis: Methods for two murine models

Authors: Mergaert, Aisha M., Warner, Thomas F., Shelef, Miriam A. ^*

Source: In Methods in Cell Biology 2022 168:125-137

Anti-Citrullinated Protein Antibody Reactivity towards Neutrophil-Derived Antigens: Clonal Diversity and Inter-Individual Variation.

Authors: Cîrciumaru, Alexandra, Afonso, Marcelo Gomes, Wähämaa, Heidi, Krishnamurthy, Akilan, Hansson, Monika, Mathsson-Alm, Linda, Keszei, Márton, Stålesen, Ragnhild, Ottosson, Lars, de Vries, Charlotte, Shelef, Miriam A., Malmström, Vivianne, Klareskog, Lars, Catrina, Anca I., Grönwall, Caroline, Hensvold, Aase, Réthi, Bence

Source: Biomolecules (2218-273X); Apr2023, Vol. 13 Issue 4, p630, 14p

Subject Terms: ANTIGENS, IMMUNE system, IMMUNOGLOBULINS, RHEUMATOID arthritis, CONFOCAL microscopy, NEUTROPHILS, OSTEOCLASTS

The landscape of antibody binding in SARS-CoV-2 infection.

Authors: Heffron, Anna S.¹, McIlwain, Sean J.^2,3, Amjadi, Maya F.⁴, Baker, David A.¹, Khullar, Saniya², Armbrust, Tammy⁵, Halfmann, Peter J.⁵, Kawaoka, Yoshihiro⁵, Sethi, Ajay K.⁶, Palmenberg, Ann C.⁷, Shelef, Miriam A.^4,8, O'Connor, David H.^1,9, Ong, Irene M.^2,3,10, irene.ong@wisc.edu

Source: PLoS Biology; 6/18/2021, Vol. 19 Issue 6, p1-25, 25p, 1 Color Photograph, 1 Black and White Photograph, 2 Charts, 5 Graphs