Apaf-1 is an evolutionarily conserved DNA sensor that switches the cell fate between apoptosis and inflammation

Authors: Jie Ruan, Xuxia Wei, Suizhi Li, Zijian Ye, Linyi Hu, Ru Zhuang, Yange Cao, Shaozhou Wang, Shengpeng Wu, Dezhi Peng, Shangwu Chen, Shaochun Yuan, Anlong Xu

Source: Cell Discovery, Vol 11, Iss 1, Pp 1-18 (2025)

Subject Terms: Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/2056-5968

Access URL: https://doaj.org/article/eb24f4a6a513487b826e5703f3b17d3b

Regulation of m6A modification on ferroptosis and its potential significance in radiosensitization

Authors: Xun Chen, Lejia Zhang, Yi He, Siyuan Huang, Shangwu Chen, Wei Zhao, Dongsheng Yu

Source: Cell Death Discovery, Vol 9, Iss 1, Pp 1-11 (2023)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282, Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/2058-7716

Access URL: https://doaj.org/article/e2cf2eaeca53469a98e78afe6e86df98

GPX8 deficiency–induced oxidative stress reprogrammed m6A epitranscriptome of oral cancer cells

Authors: Xun Chen, Lingyu Yuan, Lejia Zhang, Liutao Chen, Yi He, Chao Wang, Jie Wu, Shangwu Chen, Wei Zhao, Dongsheng Yu

Source: Epigenetics, Vol 18, Iss 1 (2023)

Subject Terms: glutathione peroxidase 8 (gpx8), oxidative stress, m6a modification, reactive oxygen species (ros), m6a regulatory genes, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1559-2294; https://doaj.org/toc/1559-2308

Access URL: https://doaj.org/article/66c6e37f811c44f4a2e2a217a9c652e9

CPSF6 regulates alternative polyadenylation and proliferation of cancer cells through phase separation

Authors: Susu Liu, Runze Wu, Liutao Chen, Ke Deng, Xin Ou, Xin Lu, Mengxia Li, Chao Liu, Shangwu Chen, Yonggui Fu, Anlong Xu

Source: Cell Reports, Vol 42, Iss 10, Pp 113197- (2023)

Subject Terms: CP:Cancer, CP: Molecular biology, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124723012093; https://doaj.org/toc/2211-1247

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Characterization of GSDME in amphioxus provides insights into the functional evolution of GSDM-mediated pyroptosis.

Authors: Xinli Wang, Xuxia Wei, Yan Lu, Qinghuan Wang, Rong Fu, Yin Wang, Qin Wang, Xiangyan Wang, Shangwu Chen, Anlong Xu, Shaochun Yuan

Source: PLoS Biology, Vol 21, Iss 5, p e3002062 (2023)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/f21378df14724e43a5fc50b47bbdd7e7

Facile bead‐to‐bead cell‐transfer method for serial subculture and large‐scale expansion of human mesenchymal stem cells in bioreactors

Authors: Shangwu Chen, Yushi Sato, Yasuhiko Tada, Yuma Suzuki, Ryosuke Takahashi, Masahiro Okanojo, Katsuhiko Nakashima

Source: Stem Cells Translational Medicine, Vol 10, Iss 9, Pp 1329-1342 (2021)

Subject Terms: bead‐to‐bead transfer, bioreactor, mesenchymal stem cell, microcarrier, nucleosides, scale up, Medicine (General), R5-920, Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/2157-6564; https://doaj.org/toc/2157-6580

Access URL: https://doaj.org/article/8327133790ec4684995328eef6e244bc

Metabolome and transcriptome analysis of flavor components and flavonoid biosynthesis in fig female flower tissues (Ficus carica L.) after bagging

Authors: Ziran Wang, Miaoyu Song, Zhe Wang, Shangwu Chen, Huiqin Ma

Source: BMC Plant Biology, Vol 21, Iss 1, Pp 1-14 (2021)

Subject Terms: Fig (Ficus carica L.), RNA-seq, Metabolites, Bagging, Female flower tissues, Flavonoids, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/6bfdaa9e5fe8464f9575adfb354ade3f

Ameliorative Effects of Lactobacillus paracasei L14 on Oxidative Stress and Gut Microbiota in Type 2 Diabetes Mellitus Rats

Authors: Zhu Zeng, Yi Yang, Xinxin Zhong, Fangyin Dai, Shangwu Chen, Xiaoling Tong

Source: Antioxidants, Vol 12, Iss 8, p 1515 (2023)

Subject Terms: probiotics, Lactobacillus, oxidative stress, type 2 diabetes mellitus, gut microbiota, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.mdpi.com/2076-3921/12/8/1515; https://doaj.org/toc/2076-3921

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Transcriptome-wide m6A methylome analysis uncovered the changes of m6A modification in oral pre-malignant cells compared with normal oral epithelial cells

Authors: Xun Chen, Liutao Chen, Yuquan Tang, Yi He, Kuangwu Pan, Linyu Yuan, Weihong Xie, Shangwu Chen, Wei Zhao, Dongsheng Yu

Source: Frontiers in Oncology, Vol 12 (2022)

Subject Terms: m6A modification, m6A regulatory genes, MeRIP sequencing, precancerous cells, dysplastic oral keratinocyte (DOK), human oral epithelial cell (HOEC), Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fonc.2022.939449/full; https://doaj.org/toc/2234-943X

Access URL: https://doaj.org/article/2d1c1b269e9849658604762643b401a5

APETALA2/ethylene responsive factor in fruit ripening: Roles, interactions and expression regulation

Authors: Yanlei Zhai, Zhiyi Fan, Yuanyuan Cui, Xiaojiao Gu, Shangwu Chen, Huiqin Ma

Source: Frontiers in Plant Science, Vol 13 (2022)

Subject Terms: AP2/ERF, fruit ripening, transcription regulation, protein interaction, phytohormone, epigenetic regulation, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2022.979348/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/21988b1ac261470187ba1055888e4779

Protein kinase function of pyruvate kinase M2 and cancer

Authors: Xun Chen, Shangwu Chen, Dongsheng Yu

Source: Cancer Cell International, Vol 20, Iss 1, Pp 1-11 (2020)

Subject Terms: Pyruvate kinase M2, Protein kinase, Glycolytic pathway, Non-metabolic function, Tumorigenesis, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282, Cytology, QH573-671

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12935-020-01612-1; https://doaj.org/toc/1475-2867

Access URL: https://doaj.org/article/ccb2fe8c525e4a2d8f89f4958e2c382e

Functional regulation of an ancestral RAG transposon ProtoRAG by a trans-acting factor YY1 in lancelet

Authors: Song Liu, Shaochun Yuan, Xiaoman Gao, Xin Tao, Wenjuan Yu, Xu Li, Shangwu Chen, Anlong Xu

Source: Nature Communications, Vol 11, Iss 1, Pp 1-15 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/8cf8cad9388848f799e5b8818620cbce

Significance of Triple Detection of p16/ki-67 Dual-Staining, Liquid-Based Cytology and HR HPV Testing in Screening of Cervical Cancer: A Retrospective Study

Authors: Li Yu, Xun Chen, Xubin Liu, Lingyan Fei, Hanyu Ma, Tian Tian, Liantang Wang, Shangwu Chen

Source: Frontiers in Oncology, Vol 12 (2022)

Subject Terms: triple detection, screening of cervical cancer, p16/ki-67 dual-staining, liquid-based cytology, HR HPV testing, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fonc.2022.915418/full; https://doaj.org/toc/2234-943X

Access URL: https://doaj.org/article/5bf91e2f1d3b4b9a8747bb586c5cb9ec

New Insights Into the Lineage-Specific Expansion and Functional Diversification of Lamprey AID/APOBEC Family

Authors: Yan Chen, Lingjie Luo, Lisi Deng, Xiaoxue Tian, Shangwu Chen, Anlong Xu, Shaochun Yuan

Source: Frontiers in Immunology, Vol 13 (2022)

Subject Terms: AID/APOBEC, variable lymphocyte receptor, lamprey, DNA deamination, expansion, virus evolution, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2022.822616/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/a6683c3ae1174ee9ae1d7c86f5ea6042

Genome-Wide Characterization and Analysis of bHLH Transcription Factors Related to Anthocyanin Biosynthesis in Fig (Ficus carica L.)

Authors: Miaoyu Song, Haomiao Wang, Zhe Wang, Hantang Huang, Shangwu Chen, Huiqin Ma

Source: Frontiers in Plant Science, Vol 12 (2021)

Subject Terms: genome-wide, bHLH transcription factors, expression analysis, anthocyanin biosynthesis, Ficus carica L., Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.730692/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/bd78994d700b4639b2b708be6422cce4

AGAMOUS Gene as a New Sex-Identification Marker in Fig (Ficus carica L.) Is More Efficient Than RAN1

Authors: Xu Wang, Miaoyu Song, Moshe A. Flaishman, Shangwu Chen, Huiqin Ma

Source: Frontiers in Plant Science, Vol 12 (2021)

Subject Terms: FcAG, FcRAN1, molecular marker, sex identification, Ficus carica L., Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.755358/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/f64ab6978508437fbd042bd20bf8b0b7

HPV-mediated down-regulation of NOD1 inhibits apoptosis in cervical cancer

Authors: Xubin Liu, Hanyu Ma, Lingyan Fei, Mengjie Jiang, Meng Xia, Lihong Bai, Xufang Pi, Shangwu Chen, Li Yu

Source: Infectious Agents and Cancer, Vol 15, Iss 1, Pp 1-10 (2020)

Subject Terms: NOD1, Cervical intraepithelial neoplasia, Cervical cancer, HPV16 E6/E7, Apoptosis, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://doaj.org/toc/1750-9378

Access URL: https://doaj.org/article/a7c2c7ba27e946b79432683d3780b5bf

Differential color development and response to light deprivation of fig (Ficus carica L.) syconia peel and female flower tissues: transcriptome elucidation

Authors: Ziran Wang, Miaoyu Song, Yunze Li, Shangwu Chen, Huiqin Ma

Source: BMC Plant Biology, Vol 19, Iss 1, Pp 1-15 (2019)

Subject Terms: Anthocyanin biosynthesis, Differentially expressed gene, Female flower tissue, Fig (Ficus carica L,), Light deprivation, Fruit peel, Botany, QK1-989

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12870-019-1816-9; https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/d341d544cf644720bd9ba899e03a4c47

Proteome and transcriptome analyses reveal key molecular differences between quality parameters of commercial-ripe and tree-ripe fig (Ficus carica L.)

Authors: Yuanyuan Cui, Ziran Wang, Shangwu Chen, Alexander Vainstein, Huiqin Ma

Source: BMC Plant Biology, Vol 19, Iss 1, Pp 1-16 (2019)

Subject Terms: Ficus carica L., Fruit, Commercial ripe, Tree ripe, Proteome, Transcriptome, Botany, QK1-989

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12870-019-1742-x; https://doaj.org/toc/1471-2229

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Two Amphioxus ApeC-Containing Proteins Bind to Microbes and Inhibit the TRAF6 Pathway

Authors: Jin Li, Yuhui Li, Zhaoyu Fan, Shenghui Chen, Xinyu Yan, Zirui Yue, Guangrui Huang, Shumin Liu, Hao Zhang, Shangwu Chen, Meiling Dong, Anlong Xu, Shengfeng Huang

Source: Frontiers in Immunology, Vol 12 (2021)

Subject Terms: ApeC, ACP, microbial binding, PGN, NF-κB, TRAF6, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2021.715245/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/fa540ce6e4244c28ba2bd2ab92569619