Early Detection of Advanced Adenomas and Colorectal Carcinoma by Serum Glycoproteome Profiling

Authors: Ding, Nik Sheng, Rice, Rachel, Cong, Xin, Schwarz, Flavio, Serie, Daniel, Wallace, Michael B., Aguilar, Humberto, Brown, Colin C., Clark, Larry E., Jr., Dang, Long, Hellstern, Paul A., Jr., Kimberly, James R., Lankarani, Ali, Misra, Bharat K., Nguyen, Hoa, Pineau, Benoit C., Siegel, Jonathan D., Trawick, Eric P., Desai, Khushbu, Gupta, Samir, May, Folasade P., Xu, Gege, Shaukat, Aasma, Hommes, Daniel W.

Source: In Gastroenterology January 2024 166(1):194-197

Serum Glycoprotein Markers in Nonalcoholic Steatohepatitis and Hepatocellular Carcinoma

Authors: Ramachandran, Prasanna, Xu, Gege, Huang, Hector H., Rice, Rachel, Zhou, Bo, Lindpaintner, Klaus, Serie, Daniel

Source: Journal of proteome research. 21(4):1083-1094

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN629106478&indx=1&recIds=ETOCRN629106478

PB-Net: Automatic peak integration by sequential deep learning for multiple reaction monitoring

Authors: Wu, Zhenqin, Serie, Daniel, Xu, Gege, Zou, James

Source: In Journal of Proteomics 15 July 2020 223

Su1091 WARNING SIGNS FROM THE CRYPT: CIRCULATING ABERRANT GLYCOSYLATION SIGNATURES CORRELATE WITH ADVANCED ADENOMA AND COLORECTAL CANCER.

Authors: Desai, Khushbu, Chandrasekar, Dharini, Ramachandran, Prasanna, Shah, Ankita, Mitchell, Alan, Xu, Gege, Serie, Daniel, Hommes, Daniel W.

Source: Gastroenterology. 164(6):S-519-S-519

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100194408704.0x000001&indx=1&recIds=ETOCvdc_100194408704.0x000001

Concordance of PD‐1 and PD‐L1 (B7‐H1) in paired primary and metastatic clear cell renal cell carcinoma

Authors: Eckel‐Passow, Jeanette E., Ho, Thai H., Serie, Daniel J., Cheville, John C., Houston Thompson, R., Costello, Brian A., Dong, Haidong, Kwon, Eugene D., Leibovich, Bradley C., Parker, Alexander S.

Source: Cancer medicine. 9(3):1152-1160

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100097861569.0x000001&indx=1&recIds=ETOCvdc_100097861569.0x000001

Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study

Authors: Pottier, Cyril, Zhou, Xiaolai, Perkerson, Ralph B, III, Baker, Matt, Jenkins, Gregory D, Serie, Daniel J, Ghidoni, Roberta, Benussi, Luisa, Binetti, Giuliano, López de Munain, Adolfo, Zulaica, Miren, Moreno, Fermin, Le Ber, Isabelle, Pasquier, Florence, Hannequin, Didier, Sánchez-Valle, Raquel, Antonell, Anna, Lladó, Albert, Parsons, Tammee M, Finch, NiCole A, Finger, Elizabeth C, Lippa, Carol F, Huey, Edward D, Neumann, Manuela, Heutink, Peter, Synofzik, Matthis, Wilke, Carlo, Rissman, Robert A, Slawek, Jaroslaw, Sitek, Emilia, Johannsen, Peter, Nielsen, Jørgen E, Ren, Yingxue, van Blitterswijk, Marka, DeJesus-Hernandez, Mariely, Christopher, Elizabeth, Murray, Melissa E, Bieniek, Kevin F, Evers, Bret M, Ferrari, Camilla, Rollinson, Sara, Richardson, Anna, Scarpini, Elio, Fumagalli, Giorgio G, Padovani, Alessandro, Hardy, John, Momeni, Parastoo, Ferrari, Raffaele, Frangipane, Francesca, Maletta, Raffaele, Anfossi, Maria, Gallo, Maura, Petrucelli, Leonard, Suh, EunRan, Lopez, Oscar L, Wong, Tsz H, van Rooij, Jeroen G J, Seelaar, Harro, Mead, Simon, Caselli, Richard J, Reiman, Eric M, Noel Sabbagh, Marwan, Kjolby, Mads, Nykjaer, Anders, Karydas, Anna M, Boxer, Adam L, Grinberg, Lea T, Grafman, Jordan, Spina, Salvatore, Oblak, Adrian, Mesulam, M-Marsel, Weintraub, Sandra, Geula, Changiz, Hodges, John R, Piguet, Olivier, Brooks, William S, Irwin, David J, Trojanowski, John Q, Lee, Edward B, Josephs, Keith A, Parisi, Joseph E, Ertekin-Taner, Nilüfer, Knopman, David S, Nacmias, Benedetta, Piaceri, Irene, Bagnoli, Silvia, Sorbi, Sandro, Gearing, Marla, Glass, Jonathan, Beach, Thomas G, Black, Sandra E, Masellis, Mario, Rogaeva, Ekaterina, Vonsattel, Jean-Paul, Honig, Lawrence S, Kofler, Julia, Bruni, Amalia C, Snowden, Julie, Mann, David, Pickering-Brown, Stuart, Diehl-Schmid, Janine, Winkelmann, Juliane, Galimberti, Daniela, Graff, Caroline, Öijerstedt, Linn, Troakes, Claire, Al-Sarraj, Safa, Cruchaga, Carlos, Cairns, Nigel J, Rohrer, Jonathan D, Halliday, Glenda M, Kwok, John B, van Swieten, John C, White, Charles L, III, Ghetti, Bernardino, Murell, Jill R, Mackenzie, Ian R A, Hsiung, Ging-Yuek R, Borroni, Barbara, Rossi, Giacomina, Tagliavini, Fabrizio, Wszolek, Zbigniew K, Petersen, Ronald C, Bigio, Eileen H, Grossman, Murray, Van Deerlin, Vivianna M, Seeley, William W, Miller, Bruce L, Graff-Radford, Neill R, Boeve, Bradley F, Dickson, Dennis W, Biernacka, Joanna M, Rademakers, Rosa

Source: In The Lancet Neurology June 2018 17(6):548-558

Conserved brain myelination networks are altered in Alzheimer's and other neurodegenerative diseases

Authors: Allen, Mariet, Wang, Xue, Burgess, Jeremy D., Watzlawik, Jens, Serie, Daniel J., Younkin, Curtis S., Nguyen, Thuy, Malphrus, Kimberly G., Lincoln, Sarah, Carrasquillo, Minerva M., Ho, Charlotte, Chakrabarty, Paramita, Strickland, Samantha, Murray, Melissa E., Swarup, Vivek, Geschwind, Daniel H., Seyfried, Nicholas T., Dammer, Eric B., Lah, James J., Levey, Allan I., Golde, Todd E., Funk, Cory, Li, Hongdong, Price, Nathan D., Petersen, Ronald C., Graff-Radford, Neill R., Younkin, Steven G., Dickson, Dennis W., Crook, Julia R., Asmann, Yan W., Ertekin-Taner, Nilüfer

Source: In Alzheimer's & Dementia: The Journal of the Alzheimer's Association March 2018 14(3):352-366

Novel plasma glycoprotein biomarkers predict progression-free survival in surgically resected clear cell renal cell carcinoma

Authors: Serie, Daniel J., Myers, Amanda A., Haehn, Daniela A., Parker, Alexander S., Bajalia, Essa M., Gonzalez, Giovanni A., Li, Qiongyu, Wong, Maurice Yu, Moser, Kaitlynn C., Zhou, Bo, Thiel, David D.

Source: In Urologic Oncology: Seminars and Original Investigations April 2022 40(4):168-168

Site-Specific Glycosylation Quantitation of 50 Serum Glycoproteins Enhanced by Predictive Glycopeptidomics for Improved Disease Biomarker Discovery

Authors: Li, Qiongyu, Kailemia, Muchena J., Merleev, Alexander A., Xu, Gege, Serie, Daniel, Danan, Lieza M., Haj, Fawaz G., Maverakis, Emanual, Lebrilla, Carlito B.

Source: Analytical chemistry. 91(8):5433-5445

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN619779032&indx=1&recIds=ETOCRN619779032

Incidence of Late Relapses in Patients With HER2-Positive Breast Cancer Receiving Adjuvant Trastuzumab: Combined Analysis of NCCTG N9831 (Alliance) and NRG Oncology/NSABP B-31

Authors: Chumsri, Saranya, Li, Zhuo, Serie, Daniel J.

Source: Journal of clinical oncology. 37(35):3425-3435

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN622417933&indx=1&recIds=ETOCRN622417933

Coffee consumption and risk of renal cell carcinoma

Authors: Antwi, Samuel O., Eckel-Passow, Jeanette E., Diehl, Nancy D., Serie, Daniel J., Custer, Kaitlynn M., Arnold, Michelle L., Wu, Kevin J., Cheville, John C., Thiel, David D., Leibovich, Bradley C., Parker, Alexander S.

Source: Cancer Causes & Control, 2017 Aug 01. 28(8), 857-866.

Access URL: https://www.jstor.org/stable/48693165

Systems biology approach to late-onset Alzheimer's disease genome-wide association study identifies novel candidate genes validated using brain expression data and Caenorhabditis elegans experiments

Authors: Mukherjee, Shubhabrata, Russell, Joshua C., Carr, Daniel T., Burgess, Jeremy D., Allen, Mariet, Serie, Daniel J., Boehme, Kevin L., Kauwe, John S.K., Naj, Adam C., Fardo, David W., Dickson, Dennis W., Montine, Thomas J., Ertekin-Taner, Nilufer, Kaeberlein, Matt R., Crane, Paul K.

Source: In Alzheimer's & Dementia: The Journal of the Alzheimer's Association October 2017 13(10):1133-1142

A candidate regulatory variant at the TREM gene cluster associates with decreased Alzheimer's disease risk and increased TREML1 and TREM2 brain gene expression

Authors: Carrasquillo, Minerva M., Allen, Mariet, Burgess, Jeremy D., Wang, Xue, Strickland, Samantha L., Aryal, Shivani, Siuda, Joanna, Kachadoorian, Michaela L., Medway, Christopher, Younkin, Curtis S., Nair, Asha, Wang, Chen, Chanana, Pritha, Serie, Daniel, Nguyen, Thuy, Lincoln, Sarah, Malphrus, Kimberly G., Morgan, Kevin, Golde, Todd E., Price, Nathan D., White, Charles C., De Jager, Philip L., Bennett, David A., Asmann, Yan W., Crook, Julia E., Petersen, Ronald C., Graff-Radford, Neill R., Dickson, Dennis W., Younkin, Steven G., Ertekin-Taner, Nilüfer

Source: In Alzheimer's & Dementia: The Journal of the Alzheimer's Association June 2017 13(6):663-673

Clear Cell Type A and B Molecular Subtypes in Metastatic Clear Cell Renal Cell Carcinoma: Tumor Heterogeneity and Aggressiveness

Authors: Serie, Daniel J., Joseph, Richard W., Cheville, John C., Ho, Thai H., Parasramka, Mansi, Hilton, Tracy, Thompson, R. Houston, Leibovich, Bradley C., Parker, Alexander S., Eckel-Passow, Jeanette E.

Source: In European Urology June 2017 71(6):979-985

Diagnosing and staging epithelial ovarian cancer by serum glycoproteomic profiling.

Authors: Dhar, Chirag, Ramachandran, Prasanna, Xu, Gege, Pickering, Chad, Čaval, Tomislav, Wong, Maurice, Rice, Rachel, Zhou, Bo, Srinivasan, Apoorva, Aiyetan, Paul, Chu, Chih-Wei, Moser, Kaitlyn, Herzog, Thomas J., Olawaiye, Alexander Babatunde, Jacob, Francis, Serie, Daniel, Lindpaintner, Klaus, Schwarz, Flavio

Source: British Journal of Cancer; Jun2024, Vol. 130 Issue 10, p1716-1724, 9p

Divergent brain gene expression patterns associate with distinct cell-specific tau neuropathology traits in progressive supranuclear palsy

Authors: Allen, Mariet, Wang, Xue, Serie, Daniel J., Strickland, Samantha L., Burgess, Jeremy D., Koga, Shunsuke, Younkin, Curtis S., Nguyen, Thuy T., Malphrus, Kimberly G., Lincoln, Sarah J., Alamprese, Melissa, Zhu, Kuixi, Chang, Rui, Carrasquillo, Minerva M., Kouri, Naomi, Murray, Melissa E., Reddy, Joseph S., Funk, Cory, Price, Nathan D., Golde, Todd E., Younkin, Steven G., Asmann, Yan W., Crook, Julia E., Dickson, Dennis W., Ertekin-Taner, Nilüfer

Source: Acta neuropathologica. 136(5):709-727

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100128808247.0x000001&indx=1&recIds=ETOCvdc_100128808247.0x000001

Chromoanasynthesis is a common mechanism that leads to ERBB2 amplifications in a cohort of early stage HER2+ breast cancer samples

Authors: Vasmatzis, George, Wang, Xue, Smadbeck, James, Murphy, Stephen, Geiersbach, Katherine, Johnson, Sarah, Gaitatzes, Athanasios, Asmann, Yan, Kosari, Farhad, Borad, Mitesh, Serie, Daniel, McLaughlin, Sarah, Kachergus, Jennifer, Necela, Brian, Thompson, E.

Source: BMC cancer. 18(1):1-9

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100188018894.0x000001&indx=1&recIds=ETOCvdc_100188018894.0x000001

Replication of progressive supranuclear palsy genome-wide association study identifies SLCO1A2 and DUSP10 as new susceptibility loci

Authors: Sanchez-Contreras, Monica, Kouri, Naomi, Cook, Casey, Serie, Daniel, Heckman, Michael, Finch, NiCole, Caselli, Richard, Uitti, Ryan, Wszolek, Zbigniew, Graff-Radford, Neill, Petrucelli, Leonard, Wang, Li-San, Schellenberg, Gerard, Dickson, Dennis, Rademakers, Rosa, Ross, Owen

Source: Molecular neurodegeneration. 13(1):1-10

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100166746221.0x000001&indx=1&recIds=ETOCvdc_100166746221.0x000001

Validation of Gene Expression Signatures to Identify Low-risk Clear-cell Renal Cell Carcinoma Patients at Higher Risk for Disease-related Death

Authors: Parasramka, Mansi, Serie, Daniel J., Asmann, Yan W., Eckel-Passow, Jeanette E., Castle, Erik P., Stanton, Melissa L., Leibovich, Brad C., Thompson, Robert Houston, Thompson, E. Aubrey, Parker, Alexander S., Ho, Thai H., Joseph, Richard W.

Source: In European Urology Focus 15 December 2016 2(6):608-615

Mayo Adhesive Probability Score Is Associated With Localized Renal Cell Carcinoma Progression-free Survival

Authors: Thiel, David D. ^*, Davidiuk, Andrew J., Meschia, Camille, Serie, Daniel, Custer, Kaitlynn, Petrou, Steven P., Parker, Alexander S.

Source: In Urology March 2016 89:54-62