Sequencing accuracy and systematic errors of nanopore direct RNA sequencing

Authors: Wang Liu-Wei, Wiep van der Toorn, Patrick Bohn, Martin Hölzer, Redmond P. Smyth, Max von Kleist

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-15 (2024)

Subject Terms: Nanopore sequencing, Direct RNA sequencing, Transcriptomics, Epitranscriptomics, Sequencing errors, Sequencing accuracy, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/cd3c7d0cec67474b96de101bc58c8145

Species-specific basecallers improve actual accuracy of nanopore sequencing in plants

Authors: Scott Ferguson, Todd McLay, Rose L. Andrew, Jeremy J. Bruhl, Benjamin Schwessinger, Justin Borevitz, Ashley Jones

Source: Plant Methods, Vol 18, Iss 1, Pp 1-11 (2022)

Subject Terms: Oxford Nanopore Technologies, PacBio, Long-read sequencing, Basecaller training, Sequencing accuracy, Asphodelaceae basecaller model, Plant culture, SB1-1110, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1746-4811

Access URL: https://doaj.org/article/2d51242d1ec4416ab60d1a30929cca22

Microbiota analysis optimization for human bronchoalveolar lavage fluid

Authors: Pierre H. H. Schneeberger, Janice Prescod, Liran Levy, David Hwang, Tereza Martinu, Bryan Coburn

Source: Microbiome, Vol 7, Iss 1, Pp 1-16 (2019)

Subject Terms: Lung microbiota, Sequencing accuracy, Sequencing precision, bronchoalveolar lavage, Microbial ecology, QR100-130

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s40168-019-0755-x; https://doaj.org/toc/2049-2618

Access URL: https://doaj.org/article/81539bd8abea4a55866529f789898945

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