Workflows Community Summit 2024: Future Trends and Challenges in Scientific Workflows

Authors: da Silva, Rafael Ferreira, Bard, Deborah, Chard, Kyle, de Witt, Shaun, Foster, Ian T., Gibbs, Tom, Goble, Carole, Godoy, William, Gustafsson, Johan, Haus, Utz-Uwe, Hudson, Stephen, Jha, Shantenu, Los, Laila, Paine, Drew, Suter, Frédéric, Ward, Logan, Wilkinson, Sean, Amaris, Marcos, Babuji, Yadu, Bader, Jonathan, Balin, Riccardo, Balouek, Daniel, Beecroft, Sarah, Belhajjame, Khalid, Bhattarai, Rajat, Brewer, Wes, Brunk, Paul, Caino-Lores, Silvina, Casanova, Henri, Cassol, Daniela, Coleman, Jared, Coleman, Taina, Colonnelli, Iacopo, Da Silva, Anderson Andrei, de Oliveira, Daniel, Elahi, Pascal, Elfaramawy, Nour, Elwasif, Wael, Etz, Brian, Fahringer, Thomas, Ferreira, Wesley, Filgueira, Rosa, Tande, Jacob Fosso, Gadelha, Luiz, Gallo, Andy, Garijo, Daniel, Georgiou, Yiannis, Gritsch, Philipp, Grubel, Patricia, Gueroudji, Amal, Guilloteau, Quentin, Hamalainen, Carlo, Enriquez, Rolando Hong, Huet, Lauren, Kesling, Kevin Hunter, Iborra, Paula, Jahangiri, Shiva, Janssen, Jan, Jordan, Joe, Kanwal, Sehrish, Kunstmann, Liliane, Lehmann, Fabian, Leser, Ulf, Li, Chen, Liu, Peini, Luettgau, Jakob, Lupat, Richard, Fernandez, Jose M., Maheshwari, Ketan, Malik, Tanu, Marquez, Jack, Matsuda, Motohiko, Medic, Doriana, Mohammadi, Somayeh, Mulone, Alberto, Navarro, John-Luke, Ng, Kin Wai, Noelp, Klaus, Kinoshita, Bruno P., Prout, Ryan, Crusoe, Michael R., Ristov, Sashko, Robila, Stefan, Rosendo, Daniel, Rowell, Billy, Rybicki, Jedrzej, Sanchez, Hector, Saurabh, Nishant, Saurav, Sumit Kumar, Scogland, Tom, Senanayake, Dinindu, Shin, Woong, Sirvent, Raul, Skluzacek, Tyler, Sly-Delgado, Barry, Soiland-Reyes, Stian, Souza, Abel, Souza, Renan, Talia, Domenico, Tallent, Nathan, Thamsen, Lauritz, Titov, Mikhail, Tovar, Benjamin, Vahi, Karan, Vardar-Irrgang, Eric, Vartina, Edite, Wang, Yuandou, Wouters, Merridee, Yu, Qi, Bkhetan, Ziad Al, Zulfiqar, Mahnoor

Subject Terms: Computer Science - Distributed, Parallel, and Cluster Computing

Access URL: http://arxiv.org/abs/2410.14943

Journeying towards best practice data management in biodiversity genomics.

Authors: Forsdick, Natalie J., Wold, Jana, Angelo, Anton, Bissey, François, Hart, Jamie, Head, Mitchell, Liggins, Libby, Senanayake, Dinindu, Steeves, Tammy E.

Source: Molecular Ecology Resources; Feb2025, Vol. 25 Issue 2, p1-13, 13p

Subject Terms: DATA management, RESEARCH personnel, USER experience, SCIENTIFIC community, GENOMICS

Genetic interaction networks mediate individual statin drug response in Saccharomyces cerevisiae

Authors: Busby, Bede, Niktab, Eliatan, Roberts, Christina, Sheridan, Jeffrey, Coorey, Namal, Senanayake, Dinindu, Connor, Lisa, Munkacsi, Andrew, Atkinson, Paul

Source: Npj systems biology and applications. 5:1-13

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100191004779.0x000001&indx=1&recIds=ETOCvdc_100191004779.0x000001

Normalization of Hepatic Homeostasis in the Npc1nmf164 Mouse Model of Niemann-Pick Type C Disease Treated with the Histone Deacetylase Inhibitor Vorinostat

Authors: Munkacsi, Andrew B., Hammond, Natalie, Schneider, Remy T., Senanayake, Dinindu S., Higaki, Katsumi, Lagutin, Kirill, Bloor, Stephen J., Ory, Daniel S., Maue, Robert A., Chen, Fannie W., Hernandez-Ono, Antonio, Dahlson, Nicole, Repa, Joyce J., Ginsberg, Henry N., Ioannou, Yiannis A., Sturley, Stephen L.

Source: In Journal of Biological Chemistry 17 March 2017 292(11):4395-4410

Publisher Correction: Genetic interaction networks mediate individual statin drug response in Saccharomyces cerevisiae

Authors: Busby, Bede P., Niktab, Eliatan, Roberts, Christina A., Sheridan, Jeffrey P., Coorey, Namal V., Senanayake, Dinindu S., Connor, Lisa M., Munkacsi, Andrew B., Atkinson, Paul H.

Source: Npj systems biology and applications. 6(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174444266.0x000001&indx=1&recIds=ETOCvdc_100174444266.0x000001

The oncogene BCL6 is up-regulated in glioblastoma in response to DNA damage, and drives survival after therapy.

Authors: Fabre, Marie-Sophie, Stanton, Nicole M., Slatter, Tania L., Lee, Samuel, Senanayake, Dinindu, Gordon, Rosemary M. A., Castro, M. Leticia, Rowe, Matthew R., Taha, Ahmad, Royds, Janice A., Hung, Noelyn, Melnick, Ari M., McConnell, Melanie J.

Source: PLoS ONE; 4/22/2020, Vol. 15 Issue 4, p1-24, 24p

Subject Terms: GLIOBLASTOMA multiforme, BRAIN tumors, IONIZING radiation, TREATMENT effectiveness, CELL death

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Assembly of female and male hihi genomes (stitchbird; Notiomystis cincta) enables characterization of the W chromosome and resources for conservation genomics.

Authors: Bailey, Sarah^1,2 (AUTHOR), Guhlin, Joseph³ (AUTHOR), Senanayake, Dinindu S.⁴ (AUTHOR), Scherer, Phoebe¹ (AUTHOR), Brekke, Patricia⁵ (AUTHOR), Ewen, John G.⁵ (AUTHOR), Santure, Anna W.^1,2 (AUTHOR) a.santure@auckland.ac.nz, Whibley, Annabel¹ (AUTHOR)

Source: Molecular Ecology Resources. Jun2023, p1. 21p. 4 Illustrations, 2 Charts.

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