Development and Assessment of a Miniaturized Thermocouple for Precise Temperature Measurement in Biological Tissues and Cells

Authors: Srivannavit, Onnop, Joshi, Rakesh, Zhu, Weibin, Gong, Bin, Sealfon, Stuart C., Borca-Tasciuc, Theodorian, Gaitas, Angelo

Subject Terms: Physics - Applied Physics

Access URL: http://arxiv.org/abs/2403.16796

Comprehensive guide for epigenetics and transcriptomics data quality control

Authors: Comendul, Arianna ¹, Ruf-Zamojski, Frederique ^{2, 3}, Ford, Colby T. ^{4, 5, 6}, Agarwal, Pankaj ⁷, Zaslavsky, Elena ³, Nudelman, German ³, Hariharan, Manoj ⁸, Rubenstein, Aliza ³, Pincas, Hanna ³, Nair, Venugopalan D. ³, Michaleas, Adam M. ¹, Fremont-Smith, Philip D. ¹, Ricke, Darrell O. ¹, Sealfon, Stuart C. ³, Woods, Christopher W. ⁷, Claypool, Kajal T. ¹, Jaimes, Rafael, III ^{1, ∗}

Source: In STAR Protocols 21 March 2025 6(1)

Clinical and functional assessment of SARS-CoV-2 sequelae among young marines – a panel study

Authors: Porter, Chad K., Beckett, Charmagne G., Cooper, Elizabeth, White, Lindsey, Wallace, David, Jakubski, Silvia, Boulifard, David, Schilling, Megan, Sun, Peifang, Marayag, Jan, Marrone, Amethyst, Nunez-Hernandez, Edgar O., Vangeti, Sindhu, Miller, Clare, Ge, Yongchao, Ramos, Irene, Goforth, Carl, Sealfon, Stuart C., Letizia, Andrew G.

Source: In The Lancet Regional Health - Americas November 2024 39

Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures

Authors: Adkins, Joshua N., Almagro Armenteros, Jose Juan, Ashley, Euan, Bae, Dam, Bamman, Marcas, Bararpour, Nasim, Bennett, Alexis, Bergman, Bryan C., Bessesen, Daniel H., Bodine, Sue C., Buford, Thomas W., Chambers, Toby L., Chavez, Clarisa, Cortes, Tiffany, Cutter, Gary, Espinoza, Sara, Fernández, Facundo M., Gagne, Nicole, Gaul, David A., Goodpaster, Bret H., Hung, Chia-Jui, Jackson, Bailey E., Jankowski, Catherine M., Jin, Christopher A., Kohrt, Wendy M., Kramer, Kyle S., Lester, Bridget, Lira, Ana K., May, Sandy, Marjanovic, Nada, Melanson, Edward L., Moore, Samuel G., Moreau, Kerrie L., Musi, Nicolas, Nachum, Daniel, Nudelman, German, Pahor, Marco, Patel, Darpan, Piehowski, Paul D., Qian, Wei-Jun, Rasmussen, Blake B., Rirak, Stas, Rooney, Jessica L., Sanford, James A., Savage, Evan M., Schauer, Irene E., Serra, Monica, Stowe, Cynthia L., Thalacker-Mercer, Anna, Trappe, Todd A., Trappe, Scott, Vetr, Nikolai G., Volpi, Elena, Wheeler, Matthew T., Wu, Si, Zebarjadi, Navid, Zhen, Jimmy, Nair, Venugopalan D., Pincas, Hanna, Smith, Gregory R., Zaslavsky, Elena, Ge, Yongchao, Amper, Mary Anne S., Vasoya, Mital, Chikina, Maria, Sun, Yifei, Raja, Archana Natarajan, Mao, Weiguang, Gay, Nicole R., Esser, Karyn A., Smith, Kevin S., Zhao, Bingqing, Wiel, Laurens, Singh, Aditya, Lindholm, Malene E., Amar, David, Montgomery, Stephen, Snyder, Michael P., Walsh, Martin J., Sealfon, Stuart C.

Source: In Cell Genomics 12 June 2024 4(6)

The mitochondrial multi-omic response to exercise training across rat tissues

Authors: Adkins, Joshua N., Armenteros, Jose Juan Almagro, Amper, Mary Anne S., Bae, Dam, Bamman, Marcas, Bararpour, Nasim, Barnes, Jerry, Bergman, Bryan C., Bessesen, Daniel H., Broskey, Nicholas T., Buford, Thomas W., Carr, Steven, Chambers, Toby L., Chavez, Clarisa, Chiu, Roxanne, Clark, Natalie, Cutter, Gary, Evans, Charles R., Franczak, Edziu, Gagne, Nicole, Ge, Yongchao, Hennig, Krista M., Houmard, Joseph A., Huffman, Kim M., Hung, Chia-Jui, Hutchinson-Bunch, Chelsea, Ilkayeva, Olga, Jackson, Bailey E., Jankowski, Catherine M., Jin, Christopher A., Johannsen, Neil M., Katz, Daniel H., Keshishian, Hasmik, Kohrt, Wendy M., Kramer, Kyle S., Kraus, William E., Lester, Bridget, Li, Jun Z., Lira, Ana K., Lowe, Adam, Mani, D.R., Many, Gina M., May, Sandy, Melanson, Edward L., Moore, Samuel G., Moreau, Kerrie L., Musi, Nicolas, Nachun, Daniel, Nair, Venugopalan D., Newgard, Christopher, Nudelman, German, Piehowski, Paul D., Pincas, Hanna, Qian, Wei-Jun, Rankinen, Tuomo, Rasmussen, Blake B., Ravussin, Eric, Rooney, Jessica L., Rushing, Scott, Samdarshi, Mihir, Sanford, James A., Schauer, Irene E., Sealfon, Stuart C., Smith, Kevin S., Smith, Gregory R., Snyder, Michael, Stowe, Cynthia L., Talton, Jennifer W., Teng, Christopher, Thalacker-Mercer, Anna, Tracy, Russell, Trappe, Scott, Trappe, Todd A., Vasoya, Mital, Vetr, Nikolai G., Volpi, Elena, Walkup, Michael P., Wiel, Laurens, Wu, Si, Yan, Zhen, Yu, Jiye, Zaslavsky, Elena, Zebarjadi, Navid, Zhen, Jimmy, Amar, David, Gay, Nicole R., Jimenez-Morales, David, Jean Beltran, Pierre M., Ramaker, Megan E., Raja, Archana Natarajan, Zhao, Bingqing, Sun, Yifei, Marwaha, Shruti, Gaul, David A., Hershman, Steven G., Ferrasse, Alexis, Xia, Ashley, Lanza, Ian, Fernández, Facundo M., Montgomery, Stephen B., Hevener, Andrea L., Ashley, Euan A., Walsh, Martin J., Sparks, Lauren M., Burant, Charles F., Rector, R. Scott, Thyfault, John, Wheeler, Matthew T., Goodpaster, Bret H., Coen, Paul M., Schenk, Simon, Bodine, Sue C., Lindholm, Malene E.

Source: In Cell Metabolism 4 June 2024 36(6):1411-1429

Diverse effector and regulatory functions of fibro/adipogenic progenitors during skeletal muscle fibrosis in muscular dystrophy

Authors: Wang, Xingyu, Chen, Jianming, Homma, Sachiko T., Wang, Yinhang, Smith, Gregory R., Ruf-Zamojski, Frederique, Sealfon, Stuart C., Zhou, Lan

Source: In iScience 20 January 2023 26(1)

Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature

Authors: Cappuccio, Antonio, Chawla, Daniel G., Chen, Xi, Rubenstein, Aliza B., Cheng, Wan Sze, Mao, Weiguang, Burke, Thomas W., Tsalik, Ephraim L., Petzold, Elizabeth, Henao, Ricardo, McClain, Micah T., Woods, Christopher W., Chikina, Maria, Troyanskaya, Olga G., Sealfon, Stuart C., Kleinstein, Steven H., Zaslavsky, Elena

Source: In Cell Systems 21 December 2022 13(12):989-1001

Benchmarking transcriptional host response signatures for infection diagnosis

Authors: Chawla, Daniel G., Cappuccio, Antonio, Tamminga, Andrea, Sealfon, Stuart C., Zaslavsky, Elena, Kleinstein, Steven H.

Source: In Cell Systems 21 December 2022 13(12):974-988

Asymptomatic or symptomatic SARS-CoV-2 infection plus vaccination confers increased adaptive immunity to variants of concern

Authors: Sun, Peifang, Ramos, Irene, Coelho, Camila H., Grifoni, Alba, Balinsky, Corey A., Vangeti, Sindhu, Tarke, Alison, Bloom, Nathaniel I., Jani, Vihasi, Jakubski, Silvia J., Boulifard, David A., Cooper, Elizabeth, Goforth, Carl W., Marayag, Jan, Marrone, Amethyst, Nunez, Edgar, White, Lindsey, Porter, Chad K., Sugiharto, Victor A., Schilling, Megan, Mahajan, Avinash S., Beckett, Charmagne, Sette, Alessandro, Sealfon, Stuart C., Crotty, Shane, Letizia, Andrew G.

Source: In iScience 21 October 2022 25(10)

SARS-CoV-2 Outbreak Dynamics in an Isolated US Military Recruit Training Center With Rigorous Prevention Measures

Authors: Lizewski, Rhonda A., Sealfon, Rachel S. G., Park, Sang Woo, Smith, Gregory R., Porter, Chad K., Gonzalez-Reiche, Ana S., Ge, Yongchao, Miller, Clare M., Goforth, Carl W., Pincas, Hanna, Termini, Michael S., Ramos, Irene, Nair, Venugopalan D., Lizewski, Stephen E., Alshammary, Hala, Cer, Regina Z., Chen, Hua Wei, George, Mary-Catherine, Arnold, Catherine E., Glang, Lindsay A., Long, Kyle A., Malagon, Francisco, Marayag, Jan J., Nunez, Edgar, Rice, Gregory K., Santa Ana, Ernesto, Schilling, Megan A., Smith, Darci R., Sugiharto, Victor A., Sun, Peifang, van de Guchte, Adriana, Khan, Zenab, Dutta, Jayeeta, Vangeti, Sindhu, Voegtly, Logan J., Weir, Dawn L., Metcalf, C. Jessica E., Troyanskaya, Olga G., Bishop-Lilly, Kimberly A., Grenfell, Bryan T., van Bakel, Harm, Letizia, Andrew G., Sealfon, Stuart C.

Source: Epidemiology. 33(6):797-807

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100178521195.0x000001&indx=1&recIds=ETOCvdc_100178521195.0x000001

Lessons Learned From a Prospective Observational Study of U.S. Marine Recruits During a Supervised Quarantine, Spring‒Fall 2020

Authors: Letizia, Andrew G., Goforth, Carl W., Ge, Yongchao, Termini, Michael S., Schilling, Megan A., Sugiharto, Victor A., Chen, Hua Wei, Ramos, Irene, Sealfon, Stuart C.

Source: In AJPM Focus September 2022 1(1)

Transcription factor GATA2 may potentiate follicle-stimulating hormone production in mice via induction of the BMP antagonist gremlin in gonadotrope cells

Authors: Schang, Gauthier, Ongaro, Luisina, Brûlé, Emilie, Zhou, Xiang, Wang, Ying, Boehm, Ulrich, Ruf-Zamojski, Frederique, Zamojski, Michel, Mendelev, Natalia, Seenarine, Nitish, Amper, Mary Anne, Nair, Venugopalan, Ge, Yongchao, Sealfon, Stuart C., Bernard, Daniel J.

Source: In Journal of Biological Chemistry July 2022 298(7)

Muscle-derived myostatin is a major endocrine driver of follicle-stimulating hormone synthesis.

Authors: Ongaro, Luisina¹, Xiang Zhou¹, Ying Wang¹, Schultz, Hailey², Ziyue Zhou¹, Buddle, Evan R. S.¹, Brûlé, Emilie², Yeu-Farn Lin¹, Schang, Gauthier¹, Hagg, Adam³, Castonguay, Roselyne⁴, Yewei Liu⁵, Su, Gloria H.⁶, Seidah, Nabil G.⁷, Ray, Kevin C.⁸, Karp, Seth J.⁸, Boehm, Ulrich⁹, Ruf-Zamojski, Frederique¹⁰, Sealfon, Stuart C.¹¹, Walton, Kelly L.³

Source: Science; 1/17/2025, Vol. 387 Issue 6731, p329-336, 8p, 5 Color Photographs

Single nucleus transcriptome and chromatin accessibility of postmortem human pituitaries reveal diverse stem cell regulatory mechanisms

Authors: Zhang, Zidong, Zamojski, Michel, Smith, Gregory R., Willis, Thea L., Yianni, Val, Mendelev, Natalia, Pincas, Hanna, Seenarine, Nitish, Amper, Mary Anne S., Vasoya, Mital, Cheng, Wan Sze, Zaslavsky, Elena, Nair, Venugopalan D., Turgeon, Judith L., Bernard, Daniel J., Troyanskaya, Olga G., Andoniadou, Cynthia L., Sealfon, Stuart C., Ruf-Zamojski, Frederique

Source: In Cell Reports 8 March 2022 38(10)

Interferon-β acts directly on T cells to prolong allograft survival by enhancing regulatory T cell induction through Foxp3 acetylation

Authors: Fueyo-González, Francisco, McGinty, Mitchell, Ningoo, Mehek, Anderson, Lisa, Cantarelli, Chiara, Andrea Angeletti, Demir, Markus, Llaudó, Inés, Purroy, Carolina, Marjanovic, Nada, Heja, David, Sealfon, Stuart C., Heeger, Peter S., Cravedi, Paolo, Fribourg, Miguel

Source: In Immunity 8 March 2022 55(3):459-474

Heterogeneous origins and functions of mouse skeletal muscle-resident macrophages

Authors: Wang, Xingyu, Sathe, Adwait Amod, Smith, Gregory R., Ruf-Zamojski, Frederique, Nair, Venugopalan, Lavine, Kory J., Xing, Chao, Sealfon, Stuart C., Zhou, Lan

Source: Proceedings of the National Academy of Sciences of the United States of America, 2020 Aug . 117(34), 20729-20740.

Access URL: https://www.jstor.org/stable/26969045

SARS-CoV-2 susceptibility and COVID-19 disease severity are associated with genetic variants affecting gene expression in a variety of tissues

Authors: Neale, Benjamin M., Daly, Mark, Ganna, Andrea, Stevens, Christine, Pathak, Gita A., Andrews, Shea J., Kanai, Masahiro, Cordioli, Mattia, Karjalainen, Juha, Polimanti, Renato, Pirinen, Matti, Harerimana, Nadia, Veerapen, Kumar, Wolford, Brooke, Nguyen, Huy, Solomonson, Matthew, Liao, Rachel G., Chwialkowska, Karolina, Trankiem, Amy, Balaconis, Mary K., Hayward, Caroline, Richmond, Anne, Campbell, Archie, Morris, Marcela, Fawns-Ritchie, Chloe, Glessner, Joseph T., Shaw, Douglas M., Chang, Xiao, Polikowski, Hannah, Lauren, Petty E., Chen, Hung-Hsin, Wanying, Zhu, Hakonarson, Hakon, Porteous, David J., Below, Jennifer, North, Kari, McCormick, Joseph B., Timmers, Paul R.H.J., Wilson, James F., Tenesa, Albert, D’Mellow, Kenton, Kerr, Shona M., Niemi, Mari E.K., Nkambul, Lindokuhle, Aprile von Hohenstaufen, Kathrin, Sobh, Ali, Eltoukhy, Madonna M., Yassen, Amr M., Hegazy, Mohamed A.F., Okasha, Kamal, Eid, Mohammed A., Moahmed, Hanteera S., Shahin, Doaa, El-Sherbiny, Yasser M., Elhadidy, Tamer A., Abd Elghafar, Mohamed S., El-Jawhari, Jehan J., Mohamed, Attia A.S., Elnagdy, Marwa H., Samir, Amr, Abdel-Aziz, Mahmoud, Khafaga, Walid T., El-Lawaty, Walaa M., Torky, Mohamed S., El-shanshory, Mohamed R., Batini, Chiara, Lee, Paul H., Shrine, Nick, Williams, Alexander T., Tobin, Martin D., Guyatt, Anna L., John, Catherine, Packer, Richard J., Ali, Altaf, Free, Robert C., Wang, Xueyang, Wain, Louise V., Hollox, Edward J., Venn, Laura D., Bee, Catherine E., Adams, Emma L., Niavarani, Ahmadreza, Sharififard, Bahareh, Aliannejad, Rasoul, Amirsavadkouhi, Ali, Naderpour, Zeinab, Tadi, Hengameh Ansari, Aleagha, Afshar Etemadi, Ahmadi, Saeideh, Mohseni Moghaddam, Seyed Behrooz, Adamsara, Alireza, Saeedi, Morteza, Abdollahi, Hamed, Hosseini, Abdolmajid, Chariyavilaskul, Pajaree, Chamnanphon, Monpat, Suttichet, Thitima B., Shotelersuk, Vorasuk, Pongpanich, Monnat, Phokaew, Chureerat, Chetruengchai, Wanna, Jantarabenjakul, Watsamon, Putchareon, Opass, Torvorapanit, Pattama, Puthanakit, Thanyawee, Suchartlikitwong, Pintip, Hirankarn, Nattiya, Nilaratanakul, Voraphoj, Sodsai, Pimpayao, Brumpton, Ben M., Hveem, Kristian, Willer, Cristen, Zhou, Wei, Rogne, Tormod, Solligard, Erik, Åsvold, Bjørn Olav, Abedalthagafi, Malak, Alaamery, Manal, Alqahtani, Saleh, Baraka, Dona, Al Harthi, Fawz, Alsolm, Ebtehal, Safieh, Leen Abu, Alowayn, Albandary M., Alqubaishi, Fatimah, Al Mutairi, Amal, Mangul, Serghei, Alshareef, Abdulraheem, Sawaji, Mona, Almutairi, Mansour, Aljawini, Nora, Albesher, Nour, Arabi, Yaseen M., Mahmoud, Ebrahim S., Khattab, Amin K., Halawani, Roaa T., Alahmadey, Ziab Z., Albakri, Jehad K., Felemban, Walaa A., Suliman, Bandar A., Hasanato, Rana, Al-Awdah, Laila, Alghamdi, Jahad, AlZahrani, Deema, AlJohani, Sameera, Al-Afghani, Hani, Alrashed, May, AlDhawi, Nouf, AlBardis, Hadeel, Alkwai, Sarah, Alswailm, Moneera, Almalki, Faisal, Albeladi, Maha, Almohammed, Iman, Barhoush, Eman, Albader, Anoud, Massadeh, Salam, AlMalik, Abdulaziz, Alotaibi, Sara, Alghamdi, Bader, Jung, Junghyun, Fawzy, Mohammad S., Lee, Yunsung, Magnus, Per, Trogstad, Lill-Iren S., Helgeland, Øyvind, Harris, Jennifer R., Mangino, Massimo, Spector, Tim D., Emma, Duncan, Smieszek, Sandra P., Przychodzen, Bartlomiej P., Polymeropoulos, Christos, Polymeropoulos, Vasilios, Polymeropoulos, Mihael H., Fernandez-Cadenas, Israel, Perez-Tur, Jordi, Llucià-Carol, Laia, Cullell, Natalia, Muiño, Elena, Cárcel-Márquez, Jara, DeDiego, Marta L., Iglesias, Lara Lloret, Planas, Anna M., Soriano, Alex, Rico, Veronica, Agüero, Daiana, Bedini, Josep L., Lozano, Francisco, Domingo, Carlos, Robles, Veronica, Ruiz-Jaén, Francisca, Márquez, Leonardo, Gomez, Juan, Coto, Eliecer, Albaiceta, Guillermo M., García-Clemente, Marta, Dalmau, David, Arranz, Maria J., Dietl, Beatriz, Serra-Llovich, Alex, Soler, Pere, Colobrán, Roger, Martín-Nalda, Andrea, Martínez, Alba Parra, Bernardo, David, Rojo, Silvia, Fiz-López, Aida, Arribas, Elisa, Cal-Sabater, Paloma de la, Segura, Tomás, González-Villa, Esther, Serrano-Heras, Gemma, Martí-Fàbregas, Joan, Jiménez-Xarrié, Elena, de Felipe Mimbrera, Alicia, Masjuan, Jaime, García-Madrona, Sebastian, Domínguez-Mayoral, Anna, Villalonga, Joan Montaner, Menéndez-Valladares, Paloma, Chasman, Daniel I., Buring, Julie E., Ridker, Paul M., Franco, Giulianini, Sesso, Howard D., Manson, JoAnn E., Glessner, Joseph R., Medina-Gomez, Carolina, Uitterlinden, Andre G., Ikram, M. 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Alaverdian, Diana, Busani, Stefano, Bruno, Raffaele, Vecchia, Marco, Belli, Mary Ann, Picchiotti, Nicola, Sanarico, Maurizio, Gori, Marco, Furini, Simone, Mantovani, Stefania, Ludovisi, Serena, Mondelli, Mario Umberto, Castelli, Francesco, Quiros-Roldan, Eugenia, Antoni, Melania Degli, Zanella, Isabella, Vaghi, Massimo, Rusconi, Stefano, Siano, Matteo, Montagnani, Francesca, Emiliozzi, Arianna, Fabbiani, Massimiliano, Rossetti, Barbara, Bargagli, Elena, Bergantini, Laura, D’Alessandro, Miriana, Cameli, Paolo, Bennett, David, Anedda, Federico, Marcantonio, Simona, Scolletta, Sabino, Franchi, Federico, Mazzei, Maria Antonietta, Guerrini, Susanna, Conticini, Edoardo, Cantarini, Luca, Frediani, Bruno, Tacconi, Danilo, Spertilli, Chiara, Feri, Marco, Donati, Alice, Scala, Raffaele, Guidelli, Luca, Spargi, Genni, Corridi, Marta, Nencioni, Cesira, Croci, Leonardo, Bandini, Maria, Caldarelli, Gian Piero, Piacentini, Paolo, Desanctis, Elena, Cappelli, Silvia, Canaccini, Anna, Verzuri, Agnese, 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Source: In Cell Reports 16 November 2021 37(7)

Differential analysis of chromatin accessibility and gene expression profiles identifies cis-regulatory elements in rat adipose and muscle

Authors: Nair, Venugopalan D., Vasoya, Mital, Nair, Vishnu, Smith, Gregory R., Pincas, Hanna, Ge, Yongchao, Douglas, Collin M., Esser, Karyn A., Sealfon, Stuart C.

Source: In Genomics November 2021 113(6):3827-3841

Tissue-based SARS-CoV-2 detection in fatal COVID-19 infections: Sustained direct viral-induced damage is not necessary to drive disease progression

Authors: El Jamal, Siraj M., Pujadas, Elisabet, Ramos, Irene, Bryce, Clare, Grimes, Zachary M., Amanat, Fatima, Tsankova, Nadejda M., Mussa, Zarmeen, Olson, Sara, Salem, Fadi, Miorin, Lisa, Aydillo, Teresa, Schotsaert, Michael, Albrecht, Randy A., Liu, Wen-Chun, Marjanovic, Nada, Francoeur, Nancy, Sebra, Robert, Sealfon, Stuart C., García-Sastre, Adolfo, Fowkes, Mary, Cordon-Cardo, Carlos, Westra, William H.

Source: In Human Pathology August 2021 114:110-119

SARS-CoV-2 seropositivity and subsequent infection risk in healthy young adults: a prospective cohort study

Authors: Letizia, Andrew G, Ge, Yongchao, Vangeti, Sindhu, Goforth, Carl, Weir, Dawn L, Kuzmina, Natalia A, Balinsky, Corey A, Chen, Hua Wei, Ewing, Dan, Soares-Schanoski, Alessandra, George, Mary-Catherine, Graham, William D, Jones, Franca, Bharaj, Preeti, Lizewski, Rhonda A, Lizewski, Stephen E, Marayag, Jan, Marjanovic, Nada, Miller, Clare M, Mofsowitz, Sagie, Nair, Venugopalan D, Nunez, Edgar, Parent, Danielle M, Porter, Chad K, Santa Ana, Ernesto, Schilling, Megan, Stadlbauer, Daniel, Sugiharto, Victor A, Termini, Michael, Sun, Peifang, Tracy, Russell P, Krammer, Florian, Bukreyev, Alexander, Ramos, Irene, Sealfon, Stuart C ^*

Source: In The Lancet Respiratory Medicine July 2021 9(7):712-720