Upgrading a cyanobacterial genome-scale model by inclusion of enzymatic constraints

Authors: Andrews, Fraser, Scrutton, Nigel S., Schwartz, Jean-Marc

Source: In Algal Research July 2024 81

A meta-analysis portal for human breast cancer transcriptomics data: BreastCancerVis

Authors: Buiga, Petronela, Soul, Jamie, Schwartz, Jean-Marc

Source: 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2018 IEEE International Conference on. :260-264 Dec, 2018

Relation: 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Data integration and mechanistic modelling for breast cancer biology: Current state and future directions

Authors: Mo, Hanyi, Breitling, Rainer, Francavilla, Chiara, Schwartz, Jean-Marc

Source: In Current Opinion in Endocrine and Metabolic Research June 2022 24

Mechanical loading activates the YAP/TAZ pathway and chemokine expression in the MLO-Y4 osteocyte-like cell line

Authors: Zarka, Mylene ^{1, 2}, Etienne, Francois ^{3, 4, 5}, Bourmaud, Morgane ^{1, 2}, Szondi, Denis ⁶, Schwartz, Jean-Marc ⁶, Kampmann, Kristine ⁷, Helary, Christopher ⁸, Rannou, Francois ^{2, 4, 5, 9}, Haÿ, Eric ^{1, 2}, Cohen-Solal, Martine ^{1, 2}

Source: In Laboratory Investigation December 2021 101(12):1597-1604

Using Multilayer Heterogeneous Networks to Infer Functions of Phosphorylated Sites

Authors: Watson, Joanne, Schwartz, Jean-Marc, Francavilla, Chiara

Source: Journal of proteome research. 20(7):3532-3548

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN627032560&indx=1&recIds=ETOCRN627032560

Metabolic flux from the chloroplast provides signals controlling photosynthetic acclimation to cold in Arabidopsis thaliana

Authors: Herrmann, Helena A., Dyson, Beth C., Miller, Matthew A. E., Schwartz, Jean‐Marc, Johnson, Giles N.

Source: Plant, cell and environment. 44(1):171-185

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100115931855.0x000001&indx=1&recIds=ETOCvdc_100115931855.0x000001

Cytosolic fumarase acts as a metabolic fail-safe for both high and low temperature acclimation of Arabidopsis thaliana

Authors: Saunders, Helena A, Calzadilla, Pablo I, Schwartz, Jean-Marc, Johnson, Giles N

Source: Journal of experimental botany. 73(7):2112-2124

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164176149.0x000001&indx=1&recIds=ETOCvdc_100164176149.0x000001

Transcriptional Profile of the Industrial Hybrid Saccharomyces pastorianus Reveals Temperature-Dependent Allele Expression Bias and Preferential Orthologous Protein Assemblies

Authors: Timouma, Soukaina, Balarezo-Cisneros, Laura Natalia, Pinto, Javier, De La Cerda, Roberto, Bond, Ursula, Schwartz, Jean-Marc, Delneri, Daniela

Source: Molecular biology and evolution. 38(12):5437-5452

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100138374950.0x000001&indx=1&recIds=ETOCvdc_100138374950.0x000001

Metabolic acclimation—a key to enhancing photosynthesis in changing environments?

Authors: Herrmann, Helena A., Schwartz, Jean-Marc, Johnson, Giles N.

Source: Journal of Experimental Botany, 2019 Jun 01. 70(12), 3043-3056.

Access URL: https://www.jstor.org/stable/26961914

Membrane Tension Orchestrates Rear Retraction in Matrix-Directed Cell Migration

Authors: Hetmanski, Joseph H.R., de Belly, Henry, Busnelli, Ignacio, Waring, Thomas, Nair, Roshna V., Sokleva, Vanesa, Dobre, Oana, Cameron, Angus, Gauthier, Nils, Lamaze, Christophe, Swift, Joe, del Campo, Aránzazu, Starborg, Tobias, Zech, Tobias, Goetz, Jacky G., Paluch, Ewa K., Schwartz, Jean-Marc, Caswell, Patrick T.

Source: In Developmental Cell 18 November 2019 51(4):460-475

Calcium activated nucleotidase 1 (CANT1) is critical for glycosaminoglycan biosynthesis in cartilage and endochondral ossification

Authors: Paganini, Chiara, Monti, Luca, Costantini, Rossella, Besio, Roberta, Lecci, Silvia, Biggiogera, Marco, Tian, Kun, Schwartz, Jean-Marc, Huber, Céline, Cormier-Daire, Valérie, Gibson, Beth G., Pirog, Katarzyna A., Forlino, Antonella, Rossi, Antonio

Source: In Matrix Biology August 2019 81:70-90

Modelling the role of dual specificity phosphatases in herceptin resistant breast cancer cell lines

Authors: Buiga, Petronela, Elson, Ari, Tabernero, Lydia, Schwartz, Jean-Marc

Source: In Computational Biology and Chemistry June 2019 80:138-146

Opportunities and Challenges Provided by Boolean Modelling of Cancer Signalling Pathways

Authors: Buiga, Petronela, Schwartz, Jean-Marc

Source: Computational biology. 32:199-216

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN625045410&indx=1&recIds=ETOCRN625045410

From empirical to theoretical models of light response curves - linking photosynthetic and metabolic acclimation

Authors: Herrmann, Helena A., Schwartz, Jean-Marc, Johnson, Giles N.

Source: Photosynthesis research. 145(1):5-14

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100171538734.0x000001&indx=1&recIds=ETOCvdc_100171538734.0x000001

Constraint-based modelling predicts metabolic signatures of low and high-grade serous ovarian cancer.

Authors: Meeson, Kate E.¹, Schwartz, Jean-Marc¹ jean-marc.schwartz@manchester.ac.uk

Source: NPJ Systems Biology & Applications. 8/24/2024, Vol. 10 Issue 1, p1-12. 12p.

Subject Terms: *OVARIAN cancer, *SEROUS fluids, *PENTOSE phosphate pathway, *METABOLIC models, *CELL growth

A practically efficient algorithm for identifying critical control proteins in directed probabilistic biological networks.

Authors: Tokuhara, Yusuke, Akutsu, Tatsuya, Schwartz, Jean-Marc, Nacher, Jose C.

Source: NPJ Systems Biology & Applications; 8/12/2024, Vol. 10 Issue 1, p1-12, 12p

Subject Terms: MOLECULAR biology, BIOLOGICAL systems, NEURAL circuitry, DOMINATING set, CELLULAR signal transduction, BIOLOGICAL networks

A global view of drug-therapy interactions

Authors: Nacher, Jose C, Schwartz, Jean-Marc

Subject Terms: Quantitative Biology - Biomolecules

Access URL: http://arxiv.org/abs/0711.1568

Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems

Authors: Ravindran, Vandana, Nacher, Jose, Akutsu, Tatsuya, Ishitsuka, Masayuki, Osadcenco, Adrian, Sunitha, V., Bagler, Ganesh, Schwartz, Jean-Marc, Robertson, David

Source: Scientific reports. 9(1):1-11

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100112270972.0x000001&indx=1&recIds=ETOCvdc_100112270972.0x000001

Flux sampling is a powerful tool to study metabolism under changing environmental conditions

Authors: Herrmann, Helena, Dyson, Beth, Vass, Lucy, Johnson, Giles, Schwartz, Jean-Marc

Source: Npj systems biology and applications. 5:1-8

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190698889.0x000001&indx=1&recIds=ETOCvdc_100190698889.0x000001

Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues

Authors: Schwartz, Jean-Marc, Otokuni, Hiroaki, Akutsu, Tatsuya, Nacher, Jose

Source: Nature communications. 10(1):1-9

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100181218026.0x000001&indx=1&recIds=ETOCvdc_100181218026.0x000001