Software package for simulations using the coarse-grained CALVADOS model

Authors: von Bülow, Sören, Yasuda, Ikki, Cao, Fan, Schulze, Thea K., Trolle, Anna Ida, Rauh, Arriën Symon, Crehuet, Ramon, Lindorff-Larsen, Kresten, Tesei, Giulio

Subject Terms: Quantitative Biology - Biomolecules

Access URL: http://arxiv.org/abs/2504.10408

Accurate model of liquid–liquid phase behavior of intrinsically disordered proteins from optimization of single-chain properties

Authors: Tesei, Giulio, Schulze, Thea K., Crehuet, Ramon, Lindorff-Larsen, Kresten

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Nov 01. 118(44), 1-10.

Access URL: https://www.jstor.org/stable/27093580

Deep mutational scanning reveals a correlation between degradation and toxicity of thousands of aspartoacylase variants.

Authors: Grønbæk-Thygesen, Martin, Voutsinos, Vasileios, Johansson, Kristoffer E., Schulze, Thea K., Cagiada, Matteo, Pedersen, Line, Clausen, Lene, Nariya, Snehal, Powell, Rachel L., Stein, Amelie, Fowler, Douglas M., Lindorff-Larsen, Kresten, Hartmann-Petersen, Rasmus

Source: Nature Communications; 5/13/2024, Vol. 15 Issue 1, p1-18, 18p

Subject Terms: PROTEIN folding, MISSENSE mutation, PROTEOLYSIS, QUALITY control, PROTEIN stability, PROTEIN-protein interactions

Characterizing glucokinase variant mechanisms using a multiplexed abundance assay.

Authors: Gersing, Sarah, Schulze, Thea K., Cagiada, Matteo, Stein, Amelie, Roth, Frederick P., Lindorff-Larsen, Kresten, Hartmann-Petersen, Rasmus

Source: Genome Biology; 4/16/2024, Vol. 25 Issue 1, p1-22, 22p