Endotype reversal as a novel strategy for screening drugs targeting familial Alzheimer's disease

Authors: Caldwell, Andrew B., Liu, Qing, Zhang, Can, Schroth, Gary P., Galasko, Douglas R., Rynearson, Kevin D., Tanzi, Rudolph E., Yuan, Shauna H., Wagner, Steven L., Subramaniam, Shankar

Source: Alzheimer's & dementia. 18(11):2117-2130

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164832470.0x000001&indx=1&recIds=ETOCvdc_100164832470.0x000001

Charting Extracellular Transcriptomes in The Human Biofluid RNA Atlas

Authors: Hulstaert, Eva, Morlion, Annelien, Avila Cobos, Francisco, Verniers, Kimberly, Nuytens, Justine, Vanden Eynde, Eveline, Yigit, Nurten, Anckaert, Jasper, Geerts, Anja, Hindryckx, Pieter, Jacques, Peggy, Brusselle, Guy, Bracke, Ken R., Maes, Tania, Malfait, Thomas, Derveaux, Thierry, Ninclaus, Virginie, Van Cauwenbergh, Caroline, Roelens, Kristien, Roets, Ellen, Hemelsoet, Dimitri, Tilleman, Kelly, Brochez, Lieve, Kuersten, Scott, Simon, Lukas M., Karg, Sebastian, Kautzky-Willers, Alexandra, Leutner, Michael, Nöhammer, Christa, Slaby, Ondrej, Prins, Roméo Willinge, Koster, Jan, Lefever, Steve, Schroth, Gary P., Vandesompele, Jo, Mestdagh, Pieter

Source: In Cell Reports 29 December 2020 33(13)

Benchmarking blood collection tubes and processing intervals for extracellular vesicle performance metrics

Authors: Dhondt, Bert, Pinheiro, Cláudio, Geeurickx, Edward, Tulkens, Joeri, Vergauwen, Glenn, Van Der Pol, Edwin, Nieuwland, Rienk, Decock, Anneleen, Miinalainen, Ilkka, Rappu, Pekka, Schroth, Gary, Kuersten, Scott, Vandesompele, Jo, Mestdagh, Pieter, Lumen, Nicolaas, De Wever, Olivier, Hendrix, An

Source: Journal of extracellular vesicles. 12(5)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100183656071.0x000001&indx=1&recIds=ETOCvdc_100183656071.0x000001

Medical countermeasures during the 2018 Ebola virus disease outbreak in the North Kivu and Ituri Provinces of the Democratic Republic of the Congo: a rapid genomic assessment

Authors: Mbala-Kingebeni, Placide, Aziza, Amuri, Di Paola, Nicholas, Wiley, Michael R, Makiala-Mandanda, Sheila, Caviness, Katie, Pratt, Catherine B, Ladner, Jason T, Kugelman, Jeffrey R, Prieto, Karla, Chitty, Joseph A, Larson, Peter A, Beitzel, Brett, Ayouba, Ahidjo, Vidal, Nicole, Karhemere, Stomy, Diop, Mamadou, Diagne, Moussa M, Faye, Martin, Faye, Ousmane, Aruna, Aaron, Nsio, Justus, Mulangu, Felix, Mukadi, Daniel, Mukadi, Patrick, Kombe, John, Mulumba, Anastasie, Villabona-Arenas, Christian-Julian, Pukuta, Elisabeth, Gonzalez, Jeanette, Bartlett, Maggie L, Sozhamannan, Shanmuga, Gross, Stephen M, Schroth, Gary P, Tim, Roger, Zhao, Junhua J, Kuhn, Jens H, Diallo, Boubacar, Yao, Michel, Fall, Ibrahima S, Ndjoloko, Bathe, Mossoko, Mathias, Lacroix, Audrey, Delaporte, Eric, Sanchez-Lockhart, Mariano, Sall, Amadou A, Muyembe-Tamfum, Jean-Jacques, Peeters, Martine, Palacios, Gustavo, Ahuka-Mundeke, Steve

Source: In The Lancet Infectious Diseases June 2019 19(6):648-657

2018 Ebola virus disease outbreak in Équateur Province, Democratic Republic of the Congo: a retrospective genomic characterisation

Authors: Mbala-Kingebeni, Placide, Pratt, Catherine B, Wiley, Michael R, Diagne, Moussa M, Makiala-Mandanda, Sheila, Aziza, Amuri, Di Paola, Nicholas, Chitty, Joseph A, Diop, Mamadou, Ayouba, Ahidjo, Vidal, Nicole, Faye, Ousmane, Faye, Oumar, Karhemere, Stormy, Aruna, Aaron, Nsio, Justus, Mulangu, Felix, Mukadi, Daniel, Mukadi, Patrick, Kombe, John, Mulumba, Anastasie, Duraffour, Sophie, Likofata, Jacques, Pukuta, Elisabeth, Caviness, Katie, Bartlett, Maggie L, Gonzalez, Jeanette, Minogue, Timothy, Sozhamannan, Shanmuga, Gross, Stephen M, Schroth, Gary P, Kuhn, Jens H, Donaldson, Eric F, Delaporte, Eric, Sanchez-Lockhart, Mariano, Peeters, Martine, Muyembe-Tamfum, Jean-Jacques, Alpha Sall, Amadou, Palacios, Gustavo, Ahuka-Mundeke, Steve

Source: In The Lancet Infectious Diseases June 2019 19(6):641-647

Enrichment post-library preparation enhances the sensitivity of high-throughput sequencing-based detection and characterization of viruses from complex samples

Authors: Paskey, Adrian, Frey, Kenneth, Schroth, Gary, Gross, Stephen, Hamilton, Theron, Bishop-Lilly, Kimberly

Source: BMC genomics. 20(1):1-14

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100185654490.0x000001&indx=1&recIds=ETOCvdc_100185654490.0x000001

Targeted Sequencing of Respiratory Viruses in Clinical Specimens for Pathogen Identification and Genome-Wide Analysis

Authors: Yang, Yu, Walls, Shannon D., Gross, Stephen M., Schroth, Gary P., Jarman, Richard G., Hang, Jun

Source: Methods in molecular biology. 1838:125-142

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN617197337&indx=1&recIds=ETOCRN617197337

Comprehensive viral enrichment enables sensitive respiratory virus genomic identification and analysis by next generation sequencing

Authors: O Flaherty, Brigid M., Li, Yan, Tao, Ying, Paden, Clinton R., Queen, Krista, Zhang, Jing, Dinwiddie, Darrell L., Gross, Stephen M., Schroth, Gary P., Tong, Suxiang

Source: Genome research. 28(6):869-877

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN616218062&indx=1&recIds=ETOCRN616218062

Bead-linked transposomes enable a normalization-free workflow for NGS library preparation

Authors: Bruinsma, Stephen, Burgess, Joshua, Schlingman, Daniel, Czyz, Agata, Morrell, Natalie, Ballenger, Catherine, Meinholz, Heather, Brady, Lee, Khanna, Anupama, Freeberg, Lindsay, Jackson, Rosamond, Mathonet, Pascale, Verity, Susan, Slatter, Andrew, Golshani, Rooz, Grunenwald, Haiying, Schroth, Gary, Gormley, Niall

Source: BMC genomics. 19(1):1-16

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100184076446.0x000001&indx=1&recIds=ETOCvdc_100184076446.0x000001

Exome-level comparison of primary well-differentiated neuroendocrine tumors and their cell lines

Authors: Boora, Ganesh K., Kanwar, Rahul, Kulkarni, Amit A., Pleticha, Josef, Ames, Matthew, Schroth, Gary, Beutler, Andreas S., Banck, Michaela S.

Source: In Cancer Genetics July-August 2015 208(7-8):374-381

Single-Cell Transcriptome Analysis Reveals Dynamic Changes in lncRNA Expression during Reprogramming

Authors: Kim, Daniel H., Marinov, Georgi K., Pepke, Shirley, Singer, Zakary S., He, Peng, Williams, Brian, Schroth, Gary P., Elowitz, Michael B., Wold, Barbara J.

Source: In Cell Stem Cell 8 January 2015 16(1):88-101

Plasticity of DNA methylation in a nerve injury model of pain

Authors: Gölzenleuchter, Meike, Kanwar, Rahul, Zaibak, Manal, Al Saiegh, Fadi, Hartung, Theresa, Klukas, Jana, Smalley, Regenia L, Cunningham, Julie M, Figueroa, Maria E, Schroth, Gary P, Therneau, Terry M, Banck, Michaela S, Beutler, Andreas S

Source: Epigenetics. 10(3):200-212

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCETOCvdc_100029009193.0x000001&indx=1&recIds=ETOCETOCvdc_100029009193.0x000001

Metagenomic shotgun sequencing of a Bunyavirus in wild-caught Aedes aegypti from Thailand informs the evolutionary and genomic history of the Phleboviruses

Authors: Chandler, James Angus, Thongsripong, Panpim, Green, Amy, Kittayapong, Pattamaporn, Wilcox, Bruce A., Schroth, Gary P., Kapan, Durrell D., Bennett, Shannon N.

Source: In Virology September 2014 464-465:312-319

P658: Hybridization-based target enrichment with Illumina Complete Long-Read assay

Authors: Huang, Tina, Truong, Tiffany, Chen, Yujue, Schroth, Gary, Chen, Feng

Source: In Genetics in Medicine Open 2023 1(1) Supplement

Rational probe design for efficient rRNA depletion and improved metatranscriptomic analysis of human microbiomes.

Authors: Tan, Asako, Murugapiran, Senthil, Mikalauskas, Alaya, Koble, Jeff, Kennedy, Drew, Hyde, Fred, Ruotti, Victor, Law, Emily, Jensen, Jordan, Schroth, Gary P., Macklaim, Jean M., Kuersten, Scott, LeFrançois, Brice, Gohl, Daryl M.

Source: BMC Microbiology; 10/20/2023, Vol. 23 Issue 1, p1-17, 17p

Subject Terms: HUMAN microbiota, RIBOSOMAL RNA, MOLECULAR probes, GENE expression profiling, GUT microbiome, GENE expression, NUCLEIC acids

Integrated RNA and metabolite profiling of urine liquid biopsies for prostate cancer biomarker discovery

Authors: Lee, Bongyong, Mahmud, Iqbal, Marchica, John, Dereziński, Paweł, Qi, Feng, Wang, Fubo, Joshi, Piyush, Valerio, Felipe, Rivera, Inoel, Patel, Vipul, Pavlovich, Christian P., Garrett, Timothy. J., Schroth, Gary P., Sun, Yinghao, Perera, Ranjan J.

Source: Scientific reports. 10(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164506036.0x000001&indx=1&recIds=ETOCvdc_100164506036.0x000001

Highly sensitive profiling of CD44+/CD24− breast cancer stem cells by combining global mRNA amplification and next generation sequencing: Evidence for a hyperactive PI3K pathway

Authors: Hardt, Olaf, Wild, Stefan, Oerlecke, Ilka, Hofmann, Kay, Luo, Shujun, Wiencek, Yvonne, Kantelhardt, Eva, Vess, Christoph, Smith, Geoffrey P., Schroth, Gary P., Bosio, Andreas, Dittmer, Jürgen

Source: In Cancer Letters 28 December 2012 325(2):165-174

Transcriptome-wide Regulation of Pre-mRNA Splicing and mRNA Localization by Muscleblind Proteins

Authors: Wang, Eric T., Cody, Neal A.L., Jog, Sonali, Biancolella, Michela, Wang, Thomas T., Treacy, Daniel J., Luo, Shujun, Schroth, Gary P., Housman, David E., Reddy, Sita, Lécuyer, Eric, Burge, Christopher B.

Source: In Cell 17 August 2012 150(4):710-724

Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer

Authors: Murchison, Elizabeth P., Schulz-Trieglaff, Ole B., Ning, Zemin, Alexandrov, Ludmil B., Bauer, Markus J., Fu, Beiyuan, Hims, Matthew, Ding, Zhihao, Ivakhno, Sergii, Stewart, Caitlin, Ng, Bee Ling, Wong, Wendy, Aken, Bronwen, White, Simon, Alsop, Amber, Becq, Jennifer, Bignell, Graham R., Cheetham, R. Keira, Cheng, William, Connor, Thomas R., Cox, Anthony J., Feng, Zhi-Ping, Gu, Yong, Grocock, Russell J., Harris, Simon R., Khrebtukova, Irina, Kingsbury, Zoya, Kowarsky, Mark, Kreiss, Alexandre, Luo, Shujun, Marshall, John, McBride, David J., Murray, Lisa, Pearse, Anne-Maree, Raine, Keiran, Rasolonjatovo, Isabelle, Shaw, Richard, Tedder, Philip, Tregidgo, Carolyn, Vilella, Albert J., Wedge, David C., Woods, Gregory M., Gormley, Niall, Humphray, Sean, Schroth, Gary, Smith, Geoffrey, Hall, Kevin, Searle, Stephen M.J., Carter, Nigel P., Papenfuss, Anthony T., Futreal, P. Andrew, Campbell, Peter J., Yang, Fengtang, Bentley, David R., Evers, Dirk J., Stratton, Michael R.

Source: In Cell 17 February 2012 148(4):780-791

Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

Authors: Lucks, Julius B., Mortimer, Stefanie A., Trapnell, Cole, Luo, Shujun, Aviran, Sharon, Schroth, Gary P., Pachter, Lior, Doudna, Jennifer A., Arkin, Adam P.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2011 Jul 01. 108(27), 11063-11068.

Access URL: https://www.jstor.org/stable/27978743