High-Sensitivity Proteome-Scale Searches for Crosslinked Peptides Using CRIMP 2.0

Authors: Crowder, D. Alex, Sarpe, Vladimir, Amaral, Bruno C., Brodie, Nicholas I., Michael, Andrew R. M., Schriemer, David C.

Source: Analytical chemistry. 95(15):6425-6432

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN632434765&indx=1&recIds=ETOCRN632434765

Apparatus for Automated Continuous Hydrogen Deuterium Exchange Mass Spectrometry Measurements from Milliseconds to Hours

Authors: Anacleto, Joseph, Lento, Cristina, Sarpe, Vladimir, Maqsood, Ayesha, Mehrazma, Banafsheh, Schriemer, David, Wilson, Derek J.

Source: Analytical chemistry. 95(9):4421-4428

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN631885455&indx=1&recIds=ETOCRN631885455

Parametric evolution of a bacterial signalling system formalized by membrane computing

Authors: Sarpe, Vladimir, Esmaeili, Afshin, Yazdanbod, Iman, Kubik, Thane, Richter, Michael, Jacob, Christian

Source: IEEE Congress on Evolutionary Computation Evolutionary Computation (CEC), 2010 IEEE Congress on. :1-8 Jul, 2010

Relation: 2010 IEEE Congress on Evolutionary Computation (CEC)

Improving Spectral Validation Rates in Hydrogen—Deuterium Exchange Data Analysis

Authors: Raval, Shaunak, Sarpe, Vladimir, Hepburn, Morgan, Crowder, D. Alex, Zhang, Terry, Viner, Rosa, Schriemer, David C.

Source: Analytical chemistry. 93(9):4246-4254

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN625844184&indx=1&recIds=ETOCRN625844184

Harmonizing structural mass spectrometry analyses in the mass spec studio

Authors: Ziemianowicz, Daniel S., Sarpe, Vladimir, Crowder, D.Alex, Pells, Troy J., Raval, Shaunak, Hepburn, Morgan, Rafiei, Atefeh, Schriemer, David C.

Source: In Journal of Proteomics 15 August 2020 225

Quantitative Analysis of Protein Covalent Labeling Mass Spectrometry Data in the Mass Spec Studio

Authors: Ziemianowicz, Daniel S., Sarpe, Vladimir, Schriemer, David C.

Source: Analytical chemistry. 91(13):8492-8499

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN620867104&indx=1&recIds=ETOCRN620867104

High Sensitivity Crosslink Detection Coupled With Integrative Structure Modeling in the Mass Spec Studio

Authors: Sarpe, Vladimir ^‡, Rafiei, Atefeh ^§, Hepburn, Morgan ^‡, Ostan, Nicholas ^¶, Schryvers, Anthony B. ^{‡, ¶}, Schriemer, David C. ^{‡, §, ‖}

Source: In Molecular & Cellular Proteomics September 2016 15(9):3071-3080

Automating data analysis for hydrogen/deuterium exchange mass spectrometry using data-independent acquisition methodology.

Authors: Filandr, Frantisek, Sarpe, Vladimir, Raval, Shaunak, Crowder, D. Alex, Khan, Morgan F., Douglas, Pauline, Coales, Stephen, Viner, Rosa, Syed, Aleem, Tainer, John A., Lees-Miller, Susan P., Schriemer, David C.

Source: Nature Communications; 3/11/2024, Vol. 15 Issue 1, p1-12, 12p

Supporting metabolomics with adaptable software: design architectures for the end-user

Authors: Sarpe, Vladimir, Schriemer, David C

Source: Current opinion in biotechnology. 43:110-117

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100062941310.0x000001&indx=1&recIds=ETOCvdc_100062941310.0x000001

Mass Spec Studio for Integrative Structural Biology

Authors: Rey, Martial, Sarpe, Vladimir, Burns, Kyle M., Buse, Joshua, Baker, Charles A.H., van Dijk, Marc, Wordeman, Linda, Bonvin, Alexandre M.J.J., Schriemer, David C.

Source: In Structure 7 October 2014 22(10):1538-1548

All-in-One Pseudo-MS³ Method for the Analysis of Gas-Phase Cleavable Protein Crosslinking Reactions.

Authors: Brodie, Nicholas I.¹ (AUTHOR), Sarpe, Vladimir¹ (AUTHOR), Crowder, D. Alex¹ (AUTHOR), Schriemer, David^1,2 (AUTHOR) dschriem@ucalgary.ca

Source: Journal of the American Society for Mass Spectrometry. 10/4/2023, Vol. 34 Issue 10, p2146-2155. 10p.

Structural members for use in wheelchairs

Ski simulating exercise machine

Simulating the decentralized processes of the human immune system in a virtual anatomy model.

Authors: Sarpe, Vladimir¹, Jacob, Christian^1,2 cjacob@ucalgary.ca

Source: BMC Bioinformatics. 2013, Vol. 14 Issue Suppl 6, p1-18. 18p. 10 Color Photographs, 3 Diagrams, 1 Chart, 3 Graphs.

Subject Terms: *IMMUNE system, *IMMUNOLOGY, *HUMAN anatomy, *HUMAN body, *HUMAN physiology

Optimization of Swarm-Based Simulations.

Authors: von Mammen, Sebastian¹, s.vonmammen@ucalgary.ca, Shirazi, Abbas Sarraf¹, Sarpe, Vladimir¹, Jacob, Christian^1,2

Source: ISRN Artificial Intelligence; 2012, Vol. 2012, p1-13, 13p

Author Correction: Automating data analysis for hydrogen/deuterium exchange mass spectrometry using data-independent acquisition methodology.

Authors: Filandr, Frantisek, Sarpe, Vladimir, Raval, Shaunak, Crowder, D. Alex, Khan, Morgan F., Douglas, Pauline, Coales, Stephen, Viner, Rosa, Syed, Aleem, Tainer, John A., Lees-Miller, Susan P., Schriemer, David C.

Source: Nature Communications; 4/2/2024, Vol. 15 Issue 1, p1-1, 1p

Subject Terms: HYDROGEN analysis, MASS spectrometry, DEUTERIUM, DATA analysis

Lactoferrin binding protein B – a bi-functional bacterial receptor protein.

Authors: Ostan, Nicholas K. H.¹, Yu, Rong-Hua¹, Ng, Dixon¹, Lai, Christine Chieh-Lin², Pogoutse, Anastassia K.², Sarpe, Vladimir³, Hepburn, Morgan³, Sheff, Joey⁴, Raval, Shaunak⁴, Schriemer, David C.³, schryver@ucalgary.ca, Moraes, Trevor F.², Schryvers, Anthony B.^1,3

Source: PLoS Pathogens; 3/3/2017, Vol. 13 Issue 3, p1-20, 20p

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Neprosin, a Selective Prolyl Endoprotease for Bottom-up Proteomics and Histone Mapping*

Authors: Schräder, Christoph U., Lee, Linda, Rey, Martial, Sarpe, Vladimir, Man, Petr, Sharma, Seema, Zabrouskov, Vlad, Larsen, Brett, Schriemer, David C.

Source: Molecular and Cellular Proteomics (MCP Online); June 2017, Vol. 16 Issue: 6 p1162-1171, 10p