Systematic functional interrogation of SARS-CoV-2 host factors using Perturb-seq

Authors: Sara Sunshine, Andreas S. Puschnik, Joseph M. Replogle, Matthew T. Laurie, Jamin Liu, Beth Shoshana Zha, James K. Nuñez, Janie R. Byrum, Aidan H. McMorrow, Matthew B. Frieman, Juliane Winkler, Xiaojie Qiu, Oren S. Rosenberg, Manuel D. Leonetti, Chun Jimmie Ye, Jonathan S. Weissman, Joseph L. DeRisi, Marco Y. Hein

Source: Nature Communications, Vol 14, Iss 1, Pp 1-13 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/117592a52159409a97218fac481cd781

A myeloid program associated with COVID-19 severity is decreased by therapeutic blockade of IL-6 signaling

Authors: Jason A. Hackney, Haridha Shivram, Jason Vander Heiden, Chris Overall, Luz Orozco, Xia Gao, Eugene Kim, Nathan West, Aditi Qamra, Diana Chang, Arindam Chakrabarti, David F. Choy, Alexis J. Combes, Tristan Courau, Gabriela K. Fragiadakis, Arjun Arkal Rao, Arja Ray, Jessica Tsui, Kenneth Hu, Nicholas F. Kuhn, Matthew F. Krummel, David J. Erle, Kirsten Kangelaris, Aartik Sarma, Zoe Lyon, Carolyn S. Calfee, Prescott G. Woodruff, Rajani Ghale, Eran Mick, Ashley Byrne, Beth Shoshana Zha, Charles Langelier, Carolyn M. Hendrickson, Monique G.P. van der Wijst, George C. Hartoularos, Tianna Grant, Raymund Bueno, David S. Lee, John R. Greenland, Yang Sun, Richard Perez, Anton Ogorodnikov, Alyssa Ward, Chun Jimmie Ye, Thiru Ramalingam, Jacqueline M. McBride, Fang Cai, Anastasia Teterina, Min Bao, Larry Tsai, Ivan O. Rosas, Aviv Regev, Sharookh B. Kapadia, Rebecca N. Bauer, Carrie M. Rosenberger, Yumiko Abe-Jones, Michael Adkisson, K. Mark Ansel, Saurabh Asthana, Alexander Beagle, Sharvari Bhide, Cathy Cai, Saharai Caldera, Maria Calvo, Sidney A. Carrillo, Suzanna Chak, Stephanie Christenson, Zachary Collins, Spyros Darmanis, Angela Detweiler, Catherine DeVoe, Walter Eckalbar, Jeremy Giberson, Ana Gonzalez, Gracie Gordon, Paula Hayakawa Serpa, Alejandra Jauregui, Chayse Jones, Serena Ke, Divya Kushnoor, Tasha Lea, Deanna Lee, Aleksandra Leligdowicz, Yale Liu, Salman Mahboob, Lenka Maliskova, Michael Matthay, Elizabeth McCarthy, Priscila Muñoz-Sandoval, Norma Neff, Viet Nguyen, Nishita Nigam, Randy Parada, Maira Phelps, Logan Pierce, Priya Prasad, Sadeed Rashid, Gabriella Reeder, Nicklaus Rodriguez, Bushra Samad, Andrew Schroeder, Cole Shaw, Alan Shen, Austin Sigman, Pratik Sinha, Matthew Spitzer, Sara Sunshine, Kevin Tang, Luz Torres Altamirano, Alexandra Tsitsiklis, Erden Tumurbaatar, Vaibhav Upadhyay, Alexander Whatley, Andrew Willmore, Michael Wilson, Juliane Winkler, Kristine Wong, Kimberly Yee, Michelle Yu, Mingyue Zhou, Wandi S. Zhu

Source: iScience, Vol 26, Iss 10, Pp 107813- (2023)

Subject Terms: Clinical genetics, Molecular medicine, Immune response, Science

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2589004223018904; https://doaj.org/toc/2589-0042

Access URL: https://doaj.org/article/9fcf76e7c2d9439cbd17b0a0b7fa8d89

Genome-Wide Knockout Screen Identifies Human Sialomucin CD164 as an Essential Entry Factor for Lymphocytic Choriomeningitis Virus

Authors: Jamin Liu, Kristeene A. Knopp, Elze Rackaityte, Chung Yu Wang, Matthew T. Laurie, Sara Sunshine, Andreas S. Puschnik, Joseph L. DeRisi

Source: mBio, Vol 13, Iss 3 (2022)

Subject Terms: CD164, CRISPR screen, lymphocytic choriomeningitis virus, viral entry, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/7c79b2d5e65341dd89b13a3d0e1b930a

Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms

Authors: Eric Song, Christopher M. Bartley, Ryan D. Chow, Thomas T. Ngo, Ruoyi Jiang, Colin R. Zamecnik, Ravi Dandekar, Rita P. Loudermilk, Yile Dai, Feimei Liu, Sara Sunshine, Jamin Liu, Wesley Wu, Isobel A. Hawes, Bonny D. Alvarenga, Trung Huynh, Lindsay McAlpine, Nur-Taz Rahman, Bertie Geng, Jennifer Chiarella, Benjamin Goldman-Israelow, Chantal B.F. Vogels, Nathan D. Grubaugh, Arnau Casanovas-Massana, Brett S. Phinney, Michelle Salemi, Jessa R. Alexander, Juan A. Gallego, Todd Lencz, Hannah Walsh, Anne E. Wapniarski, Subhasis Mohanty, Carolina Lucas, Jon Klein, Tianyang Mao, Jieun Oh, Aaron Ring, Serena Spudich, Albert I. Ko, Steven H. Kleinstein, John Pak, Joseph L. DeRisi, Akiko Iwasaki, Samuel J. Pleasure, Michael R. Wilson, Shelli F. Farhadian

Source: Cell Reports Medicine, Vol 2, Iss 5, Pp 100288- (2021)

Subject Terms: COVID-19, neurological infection, autoimmunity, cerebrospinal fluid, SARS-CoV-2, Medicine (General), R5-920

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2666379121001166; https://doaj.org/toc/2666-3791

Access URL: https://doaj.org/article/13598675c04e4b9aa6e8c523385b4bf1

Rapid deployment of SARS-CoV-2 testing: The CLIAHUB.

Authors: Emily D Crawford, Irene Acosta, Vida Ahyong, Erika C Anderson, Shaun Arevalo, Daniel Asarnow, Shannon Axelrod, Patrick Ayscue, Camillia S Azimi, Caleigh M Azumaya, Stefanie Bachl, Iris Bachmutsky, Aparna Bhaduri, Jeremy Bancroft Brown, Joshua Batson, Astrid Behnert, Ryan M Boileau, Saumya R Bollam, Alain R Bonny, David Booth, Michael Jerico B Borja, David Brown, Bryan Buie, Cassandra E Burnett, Lauren E Byrnes, Katelyn A Cabral, Joana P Cabrera, Saharai Caldera, Gabriela Canales, Gloria R Castañeda, Agnes Protacio Chan, Christopher R Chang, Arthur Charles-Orszag, Carly Cheung, Unseng Chio, Eric D Chow, Y Rose Citron, Allison Cohen, Lillian B Cohn, Charles Chiu, Mitchel A Cole, Daniel N Conrad, Angela Constantino, Andrew Cote, Tre'Jon Crayton-Hall, Spyros Darmanis, Angela M Detweiler, Rebekah L Dial, Shen Dong, Elias M Duarte, David Dynerman, Rebecca Egger, Alison Fanton, Stacey M Frumm, Becky Xu Hua Fu, Valentina E Garcia, Julie Garcia, Christina Gladkova, Miriam Goldman, Rafael Gomez-Sjoberg, M Grace Gordon, James C R Grove, Shweta Gupta, Alexis Haddjeri-Hopkins, Pierce Hadley, John Haliburton, Samantha L Hao, George Hartoularos, Nadia Herrera, Melissa Hilberg, Kit Ying E Ho, Nicholas Hoppe, Shayan Hosseinzadeh, Conor J Howard, Jeffrey A Hussmann, Elizabeth Hwang, Danielle Ingebrigtsen, Julia R Jackson, Ziad M Jowhar, Danielle Kain, James Y S Kim, Amy Kistler, Oriana Kreutzfeld, Jessie Kulsuptrakul, Andrew F Kung, Charles Langelier, Matthew T Laurie, Lena Lee, Kun Leng, Kristoffer E Leon, Manuel D Leonetti, Sophia R Levan, Sam Li, Aileen W Li, Jamin Liu, Heidi S Lubin, Amy Lyden, Jennifer Mann, Sabrina Mann, Gorica Margulis, Diana M Marquez, Bryan P Marsh, Calla Martyn, Elizabeth E McCarthy, Aaron McGeever, Alexander F Merriman, Lauren K Meyer, Steve Miller, Megan K Moore, Cody T Mowery, Tanzila Mukhtar, Lusajo L Mwakibete, Noelle Narez, Norma F Neff, Lindsay A Osso, Diter Oviedo, Suping Peng, Maira Phelps, Kiet Phong, Peter Picard, Lindsey M Pieper, Neha Pincha, Angela Oliveira Pisco, Angela Pogson, Sergei Pourmal, Robert R Puccinelli, Andreas S Puschnik, Elze Rackaityte, Preethi Raghavan, Madhura Raghavan, James Reese, Joseph M Replogle, Hanna Retallack, Helen Reyes, Donald Rose, Marci F Rosenberg, Estella Sanchez-Guerrero, Sydney M Sattler, Laura Savy, Stephanie K See, Kristin K Sellers, Paula Hayakawa Serpa, Maureen Sheehy, Jonathan Sheu, Sukrit Silas, Jessica A Streithorst, Jack Strickland, Doug Stryke, Sara Sunshine, Peter Suslow, Renaldo Sutanto, Serena Tamura, Michelle Tan, Jiongyi Tan, Alice Tang, Cristina M Tato, Jack C Taylor, Iliana Tenvooren, Erin M Thompson, Edward C Thornborrow, Eric Tse, Tony Tung, Marc L Turner, Victoria S Turner, Rigney E Turnham, Mary J Turocy, Trisha V Vaidyanathan, Ilia D Vainchtein, Manu Vanaerschot, Sara E Vazquez, Anica M Wandler, Anne Wapniarski, James T Webber, Zara Y Weinberg, Alexandra Westbrook, Allison W Wong, Emily Wong, Gajus Worthington, Fang Xie, Albert Xu, Terrina Yamamoto, Ying Yang, Fauna Yarza, Yefim Zaltsman, Tina Zheng, Joseph L DeRisi

Source: PLoS Pathogens, Vol 16, Iss 10, p e1008966 (2020)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/3bbb68a359bd42bc9db996dc6d89e140

Identification of novel, clinically correlated autoantigens in the monogenic autoimmune syndrome APS1 by proteome-wide PhIP-Seq

Authors: Sara E Vazquez, Elise MN Ferré, David W Scheel, Sara Sunshine, Brenda Miao, Caleigh Mandel-Brehm, Zoe Quandt, Alice Y Chan, Mickie Cheng, Michael German, Michail Lionakis, Joseph L DeRisi, Mark S Anderson

Source: eLife, Vol 9 (2020)

Subject Terms: APECED, autoantigens, PhIP-Seq, autoimmunity, enteroendocrine cells, ovarian insufficiency, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/55053; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/1520599b04384010a0a8ecbeae8656f8

Connecting University Course Work and Practitioner Knowledge through Mediated Field Experiences

Authors: Campbell, Sara Sunshine, Dunleavy, Teresa K.

Source: Teacher Education Quarterly. Sum 2016 43(3):49-70.

Peer Reviewed: Y

Page Count: 22

Descriptors: College School Cooperation, Partnerships in Education, College Curriculum, Teaching Methods, Teacher Education, Teacher Education Programs, Semi Structured Interviews, Field Experience Programs, Qualitative Research

Access URL: https://www.teqjournal.org

Designs for Simultaneous Renewal in University-Public School Partnerships: Hitting the 'Sweet Spot'

Authors: Bier, Marisa L., Horn, Ilana, Campbell, Sara Sunshine, Kazemi, Elham, Hintz, Allison, Kelley-Petersen, Megan, Stevens, Re, Saxena, Amit, Peck, Charles

Source: Teacher Education Quarterly. Sum 2012 39(3):127-141.

Peer Reviewed: Y

Page Count: 15

Descriptors: Public Schools, College School Cooperation, Partnerships in Education, Teacher Education Programs, Accountability, Federal Legislation, Educational Resources, Time Management, Cost Effectiveness, Elementary School Mathematics, Grade 1, Educational Assessment, Student Evaluation, Cognitive Processes, Decision Making, Teaching Skills, Group Discussion, Secondary School Mathematics, Urban Schools, Preservice Teachers, Observation, Classroom Environment

Laws, Policies and Program Identifiers: No Child Left Behind Act 2001

Access URL: https://www.teqjournal.org/

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Developing Pedagogical Judgment in Novice Teachers: Mediated Field Experience as a Pedagogy for Teacher Education

Authors: Horn, Ilana Seidel, Campbell, Sara Sunshine

Source: Pedagogies: An International Journal. 2015 10(2):149-176.

Peer Reviewed: Y

Page Count: 28

Descriptors: Criticism, Novices, Secondary School Teachers, Methods Courses, Teacher Education Programs, Mathematics Instruction, Teaching Methods, Field Experience Programs, Mathematical Concepts, Educational Practices, Professional Identity, Knowledge Base for Teaching, Researchers, Role

Geographic Terms: Washington

Taking Them into the Field: Mathematics Teacher Candidate Learning about Equity-Oriented Teaching Practices in a Mediated Field Experience

Authors: Campbell, Sara Sunshine

Source: ProQuest LLC. 2012Ph.D. Dissertation, University of Washington.

Peer Reviewed: N

Page Count: 292

Descriptors: Teacher Education Programs, Models, Field Experience Programs, Secondary School Mathematics, Mathematics Teachers, Methods Courses, Algebra, Urban Schools, Social Justice, Equal Education, College School Cooperation, Teacher Educators, Partnerships in Education, Cooperative Planning, Teaching Methods, Video Technology, Observation, Teacher Collaboration

Access URL: https://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:3521439

Designs for Simultaneous Renewal in University-Public School Partnerships: Hitting the "Sweet Spot"

Authors: Samena, Amit, Park, Charles, Bier, Marisa L., Horn, Ilana, Campbell, Sara Sunshine, Kazemi, Elham, Hintz, Allison, Kelley-Petersen, Megan, Stevens, Reed, Saxena, Amit, Peck, Charles

Source: Teacher Education Quarterly, 2012 Jul 01. 39(3), 127-141.

Access URL: https://www.jstor.org/stable/23479686

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