Whole-genome sequencing-based genetic diversity, transmission dynamics, and drug-resistant mutations in Mycobacterium tuberculosis isolated from extrapulmonary tuberculosis patients in western Ethiopia

Authors: Basha Chekesa, Harinder Singh, Norberto Gonzalez-Juarbe, Sanjay Vashee, Rosana Wiscovitch-Russo, Christopher L. Dupont, Musse Girma, Oudessa Kerro, Balako Gumi, Gobena Ameni

Source: Frontiers in Public Health, Vol 12 (2024)

Subject Terms: Extrapulmonary tuberculosis, drug resistance-conferring mutations, genetic diversity, Mycobacterium tuberculosis, transmission dynamics, whole-genome sequencing, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpubh.2024.1399731/full; https://doaj.org/toc/2296-2565

Access URL: https://doaj.org/article/412e3f454e3d430fa43bd19add816f13

SARS-CoV-2 ORF8 modulates lung inflammation and clinical disease progression.

Authors: Marisa E McGrath, Yong Xue, Louis Taylor, Carly Dillen, Jeremy Ardanuy, Norberto Gonzalez-Juarbe, Lauren Baracco, Raymond Kim, Rebecca Hart, Nacyra Assad-Garcia, Sanjay Vashee, Matthew B Frieman

Source: PLoS Pathogens, Vol 20, Iss 5, p e1011669 (2024)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1011669&type=printable; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/602ed19f5caf45d881bc082f18a45d1d

Pangenome and genomic signatures linked to the dominance of the lineage-4 of Mycobacterium tuberculosis isolated from extrapulmonary tuberculosis patients in western Ethiopia.

Authors: Basha Chekesa, Harinder Singh, Norberto Gonzalez-Juarbe, Sanjay Vashee, Rosana Wiscovitch-Russo, Christopher L Dupont, Musse Girma, Oudessa Kerro, Balako Gumi, Gobena Ameni

Source: PLoS ONE, Vol 19, Iss 7, p e0304060 (2024)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/4a2f474f1b5245a4942ce07d04b808d1

A neonatal mouse model characterizes transmissibility of SARS-CoV-2 variants and reveals a role for ORF8

Authors: Bruno A. Rodriguez-Rodriguez, Grace O. Ciabattoni, Ralf Duerr, Ana M. Valero-Jimenez, Stephen T. Yeung, Keaton M. Crosse, Austin R. Schinlever, Lucie Bernard-Raichon, Joaquin Rodriguez Galvan, Marisa E. McGrath, Sanjay Vashee, Yong Xue, Cynthia A. Loomis, Kamal M. Khanna, Ken Cadwell, Ludovic Desvignes, Matthew B. Frieman, Mila B. Ortigoza, Meike Dittmann

Source: Nature Communications, Vol 14, Iss 1, Pp 1-15 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/4f82157bf5264550bc33dcd07d963594

Major adverse cardiovascular events are associated with necroptosis during severe COVID-19

Authors: Rosana Wiscovitch-Russo, Elsa D. Ibáñez-Prada, Cristian C. Serrano-Mayorga, Benjamin L. Sievers, Maeve A. Engelbride, Surya Padmanabhan, Gene S. Tan, Sanjay Vashee, Ingrid G. Bustos, Carlos Pachecho, Lina Mendez, Peter H. Dube, Harinder Singh, Luis Felipe Reyes, Norberto Gonzalez-Juarbe

Source: Critical Care, Vol 27, Iss 1, Pp 1-13 (2023)

Subject Terms: COVID-19, Necroptosis, Heart injury, Medical emergencies. Critical care. Intensive care. First aid, RC86-88.9

File Description: electronic resource

Relation: https://doaj.org/toc/1364-8535

Access URL: https://doaj.org/article/3917d4228fbf44ac98b8c036f4f5d282

Corrigendum: Evidence for the cytoplasmic localization of the L-α-Glycerophosphate oxidase in members of the 'Mycoplasma mycoides cluster'

Authors: Melanie Schumacher, Pamela Nicholson, Michael H. Stoffel, Suchismita Chandran, Adonis D'Mello, Li Ma, Sanjay Vashee, Joerg Jores, Fabien Labroussaa

Source: Frontiers in Microbiology, Vol 14 (2023)

Subject Terms: “Mycoplasma mycoides cluster”, synthetic genomics, mycoplasma virulence traits, L-α-glycerophosphate oxidase, Triton X-114, scanning electron microscopy, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2023.1293129/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/20b5316340e24c779e7b794a9f3d468b

SARS-CoV-2 ORF6 protein does not antagonize interferon signaling in respiratory epithelial Calu-3 cells during infection

Authors: Minghua Li, Kasirajan Ayyanathan, Mark Dittmar, Jesse Miller, Iulia Tapescu, Jae Seung Lee, Marisa E. McGrath, Yong Xue, Sanjay Vashee, David C. Schultz, Matthew B. Frieman, Sara Cherry

Source: mBio, Vol 14, Iss 4 (2023)

Subject Terms: SARS-CoV-2, ORF6, interferon, antagonism, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/5a2277c98fd74afdb069e8e30a0a024a

Rapid CRISPR/Cas9 Editing of Genotype IX African Swine Fever Virus Circulating in Eastern and Central Africa

Authors: Hussein M. Abkallo, Nicholas Svitek, Bernard Oduor, Elias Awino, Sonal P. Henson, Samuel O. Oyola, Stephen Mwalimu, Nacrya Assad-Garcia, Walter Fuchs, Sanjay Vashee, Lucilla Steinaa

Source: Frontiers in Genetics, Vol 12 (2021)

Subject Terms: ASFV, CRISPR/Cas9, gene editing, in-frame deletion, virus isolation, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2021.733674/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/5d9904c4bf4b49ddaca4647187d8e7e7

Co-Deletion of A238L and EP402R Genes from a Genotype IX African Swine Fever Virus Results in Partial Attenuation and Protection in Swine

Authors: Hussein M. Abkallo, Johanneke D. Hemmink, Bernard Oduor, Emmanuel M. Khazalwa, Nicholas Svitek, Nacyra Assad-Garcia, Jeremiah Khayumbi, Walter Fuchs, Sanjay Vashee, Lucilla Steinaa

Source: Viruses, Vol 14, Iss 9, p 2024 (2022)

Subject Terms: ASFV, gene deletion, virulence, attenuation, protection, vaccine, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/14/9/2024; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/8601db7b25114b5da6675f74d56fe2ef

Attenuation of a Pathogenic Mycoplasma Strain by Modification of the obg Gene by Using Synthetic Biology Approaches

Authors: Carole Lartigue, Yanina Valverde Timana, Fabien Labroussaa, Elise Schieck, Anne Liljander, Flavio Sacchini, Horst Posthaus, Brigitte Batailler, Pascal Sirand-Pugnet, Sanjay Vashee, Joerg Jores, Alain Blanchard

Source: mSphere, Vol 4, Iss 3 (2019)

Subject Terms: GTPase Obg, Mycoplasma, Saccharomyces cerevisiae, attenuated strain, genome engineering, genome transplantation, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5042

Access URL: https://doaj.org/article/ed83cef1f72e4a6fb7a486e1ae7354d3

Evidence for the Cytoplasmic Localization of the L-α-Glycerophosphate Oxidase in Members of the 'Mycoplasma mycoides Cluster'

Authors: Melanie Schumacher, Pamela Nicholson, Michael H. Stoffel, Suchismita Chandran, Adonis D’Mello, Li Ma, Sanjay Vashee, Joerg Jores, Fabien Labroussaa

Source: Frontiers in Microbiology, Vol 10 (2019)

Subject Terms: “Mycoplasma mycoides cluster, ” synthetic genomics, mycoplasma virulence traits, L-α-glycerophosphate oxidase, Triton X-114, scanning electron microscopy, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2019.01344/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/503faac23ea94c129ff2e526efe26b19

Removal of a Subset of Non-essential Genes Fully Attenuates a Highly Virulent Mycoplasma Strain

Authors: Joerg Jores, Li Ma, Paul Ssajjakambwe, Elise Schieck, Anne Liljander, Suchismita Chandran, Michael H. Stoffel, Valentina Cippa, Yonathan Arfi, Nacyra Assad-Garcia, Laurent Falquet, Pascal Sirand-Pugnet, Alain Blanchard, Carole Lartigue, Horst Posthaus, Fabien Labroussaa, Sanjay Vashee

Source: Frontiers in Microbiology, Vol 10 (2019)

Subject Terms: Mycoplasma mycoides subsp. capri, attenuation, genome engineering, in vivo challenge, virulence traits, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2019.00664/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/fb6b940619c04b0cb1c26135a6ffa855

Cloning, Assembly, and Modification of the Primary Human Cytomegalovirus Isolate Toledo by Yeast-Based Transformation-Associated Recombination

Authors: Sanjay Vashee, Timothy B. Stockwell, Nina Alperovich, Evgeniya A. Denisova, Daniel G. Gibson, Kyle C. Cady, Kristofer Miller, Krishna Kannan, Daniel Malouli, Lindsey B. Crawford, Alexander A. Voorhies, Eric Bruening, Patrizia Caposio, Klaus Früh

Source: mSphere, Vol 2, Iss 5 (2017)

Subject Terms: Saccharomyces cerevisiae, cloning, cytomegalovirus, genetic recombination, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5042

Access URL: https://doaj.org/article/a21d363ce75f422ea5457758aa820bd9

A Type III restriction–modification system in Mycoplasma mycoides subsp. capri

Authors: Mikkel A. Algire, Michael G. Montague, Sanjay Vashee, Carole Lartigue, Chuck Merryman

Source: Open Biology, Vol 2, Iss 10 (2012)

Subject Terms: methyltransferase, mycoplasma, phase variation, type iii, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2046-2441

Access URL: https://doaj.org/article/d4e8a15ae4c0454cb4ec38408e9d86d4

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