A comprehensive method on black-legged tick larvae and nymph feeding on mice to study Lyme disease transmission and acquisition

Authors: Aaron Scholl, Bingjie Li, John Dennis, Sandip De

Source: Frontiers in Microbiology, Vol 16 (2025)

Subject Terms: tick, Lyme, Borrelia burgdorferi, mice, feeding, transmission, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2025.1527821/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/3971a1ae1b0f406c98aebc72873793dc

From Poison to Promotor: Spatially Isolated Metal Sites in Supported Rhodium Sulfides as Hydroformylation Catalysts

Authors: Arjun Neyyathala, Edvin Fako, Sandip De, Daria Gashnikova, Florian Maurer, Jan‐Dierk Grunwaldt, Stephan A. Schunk, Schirin Hanf

Source: Small Structures, Vol 6, Iss 1, Pp n/a-n/a (2025)

Subject Terms: heterogeneous catalysis, hydroformylation, rhodium sulfide, structural motifs, supported nanoparticles, Physics, QC1-999, Chemistry, QD1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2688-4062

Access URL: https://doaj.org/article/4c8b94fd4313408b9935cda7a64d799f

Accurate energy barriers for catalytic reaction pathways: an automatic training protocol for machine learning force fields

Authors: Lars L. Schaaf, Edvin Fako, Sandip De, Ansgar Schäfer, Gábor Csányi

Source: npj Computational Materials, Vol 9, Iss 1, Pp 1-10 (2023)

Subject Terms: Materials of engineering and construction. Mechanics of materials, TA401-492, Computer software, QA76.75-76.765

File Description: electronic resource

Relation: https://doaj.org/toc/2057-3960

Access URL: https://doaj.org/article/063fc02329424cd6a8bc5ef70ff95b77

Surface segregation in high-entropy alloys from alchemical machine learning

Authors: Arslan Mazitov, Maximilian A Springer, Nataliya Lopanitsyna, Guillaume Fraux, Sandip De, Michele Ceriotti

Source: JPhys Materials, Vol 7, Iss 2, p 025007 (2024)

Subject Terms: high-entropy alloys, catalysis, machine learning, Materials of engineering and construction. Mechanics of materials, TA401-492, Physics, QC1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2515-7639

Access URL: https://doaj.org/article/f4cd8719176f4a1e8bf17e83935dd19f

Chemical shifts in molecular solids by machine learning

Authors: Federico M. Paruzzo, Albert Hofstetter, Félix Musil, Sandip De, Michele Ceriotti, Lyndon Emsley

Source: Nature Communications, Vol 9, Iss 1, Pp 1-10 (2018)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/970a2addd1a345bea23283a88747dfe7

The RNA helicase UPF1 associates with mRNAs co-transcriptionally and is required for the release of mRNAs from gene loci

Authors: Anand K Singh, Subhendu Roy Choudhury, Sandip De, Jie Zhang, Stephen Kissane, Vibha Dwivedi, Preethi Ramanathan, Marija Petric, Luisa Orsini, Daniel Hebenstreit, Saverio Brogna

Source: eLife, Vol 8 (2019)

Subject Terms: NMD, Transcription, mRNA export, splicing, polytene chromosomes, RNA helicases, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/41444; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/a0f2a48b174048d6a6a433c6a5d586ca

Formation of a Polycomb-Domain in the Absence of Strong Polycomb Response Elements.

Authors: Sandip De, Apratim Mitra, Yuzhong Cheng, Karl Pfeifer, Judith A Kassis

Source: PLoS Genetics, Vol 12, Iss 7, p e1006200 (2016)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4965088?pdf=render; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/8484768162f04249994c78e8be7164fb

An ancient yet flexible cis-regulatory architecture allows localized Hedgehog tuning by patched/Ptch1

Authors: David S Lorberbaum, Andrea I Ramos, Kevin A Peterson, Brandon S Carpenter, David S Parker, Sandip De, Lauren E Hillers, Victoria M Blake, Yuichi Nishi, Matthew R McFarlane, Ason CY Chiang, Judith A Kassis, Benjamin L Allen, Andrew P McMahon, Scott Barolo

Source: eLife, Vol 5 (2016)

Subject Terms: gene regulation, evolution of development (evo-devo), Hedgehog signaling, cis-regulatory elements, transcriptional regulation, development, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/13550; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/e6841d4cac114d2fb24dfeb50bf17210

Systematic review: effect of lipid and lipoprotein profiles on atherosclerosis and cardiovascular disease risk in premenopausal and postmenopausal women

Authors: Avinash Namdeo Jadhao, Anita Shivaji Chalak, Sandip Deepak Lambe

Source: Advances in Medical, Pharmaceutical and Dental Research, Vol 4, Iss 2, Pp 85-92 (2024)

Subject Terms: lipid metabolism, dyslipidemia ,hysterectomy, oophorectomy, cardiovascular risk., Dentistry, RK1-715, Therapeutics. Pharmacology, RM1-950, Medicine (General), R5-920

File Description: electronic resource

Relation: http://apc.aast.edu/ojs/index.php/AMPDR/article/view/931; https://doaj.org/toc/2812-488X; https://doaj.org/toc/2812-4898

Access URL: https://doaj.org/article/d7a0a46f3a8b4ae9898fca70366f8ab5

An investigation of deep learning approaches for efficient assembly component identification

Authors: Kaki Ramesh, Faisel Mushtaq, Sandip Deshmukh, Tathagata Ray, Chandu Parimi, Ali Basem, Ammar Elsheikh

Source: Beni-Suef University Journal of Basic and Applied Sciences, Vol 13, Iss 1, Pp 1-28 (2024)

Subject Terms: Assembly lines, Deep learning, Object detection, Mechanical fasteners, Object identification, Medicine (General), R5-920, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2314-8543

Access URL: https://doaj.org/article/0850bcb013c2462b9afb6de5a4864000

In silico analysis of LPMO inhibition by ethylene precursor ACCA to combat potato late blight

Authors: Najla A. Alshaikh, Kahkashan Perveen, Sandip Debnath, Amitava Paul, Ong Ghim Hock, R.Z. Sayyed

Source: Journal of King Saud University: Science, Vol 36, Iss 10, Pp 103436- (2024)

Subject Terms: 1-amino-cyclopropane-1-carboxylic acid, Molecular docking, Molecular dynamic simulation, Sustainable potato production, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1018364724003483; https://doaj.org/toc/1018-3647

Access URL: https://doaj.org/article/9759d7e5f298421eba1868ba60085c74

Hymenopteran parasitoid complex and fall armyworm: a case study in eastern India

Authors: Subhajit Pal, Swarnali Bhattacharya, Tapamay Dhar, Ankita Gupta, Arunava Ghosh, Sandip Debnath, Nikhitha Gangavarapu, Prajna Pati, Nilanjana Chaudhuri, Hirak Chatterjee, Sabita Kumar Senapati, Prateek Madhab Bhattacharya, Mahesh Kumar Gathala, Alison M. Laing

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-14 (2024)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/cdca36a302a446c2a7a9f9a30950b99e

Estimating optimum and base selection indices in plant and animal breeding programs by development new and simple SAS and R codes

Authors: Mehdi Rahimi, Sandip Debnath

Source: Scientific Reports, Vol 13, Iss 1, Pp 1-8 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/2775a2c489c443918784e9b3e44a7303

Evaluation of basil (Ocimum basilicum) accessions under different drought conditions based on yield and physio-biochemical traits

Authors: Mehdi Rahimi, Mojtaba Mortazavi, Ameneh Mianabadi, Sandip Debnath

Source: BMC Plant Biology, Vol 23, Iss 1, Pp 1-15 (2023)

Subject Terms: Water deficit conditions, Mean comparison, Multivariate analysis, Proline content, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/a9a2e5bd5e754d51b2e738fbf743f564

Genomic dataset of a multiple-drug resistant Pseudomonas sp. strain RAC1 isolated from a flacherie infected Nistari race of Bombyx mori L.

Authors: Rittick Mondal, Paulami Dam, Joydeep Chakraborty, Shubhajit Shaw, Sayantan Pradhan, Sandip Das, Jannatun Nesa, Khemraj Meena, Amit Ghati, Sandip Dev Chaudhuri, Debjoy Bhattacharjee, Vivekananda Mandal, Biraj Sarkar, Amit Kumar Mandal

Source: Data in Brief, Vol 54, Iss , Pp 110293- (2024)

Subject Terms: Silkworm, Antimicrobial resistance (AMR), Illumina NovaSeq 6000, Genetic diversity, Computer applications to medicine. Medical informatics, R858-859.7, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2352340924002622; https://doaj.org/toc/2352-3409

Access URL: https://doaj.org/article/686687b92f034c079c9871240e3215cd

A novel front in sustainable microbial management: computational analysis of curcumin and mangiferin’s synergistic action against Bacillus anthracis

Authors: Kahkashan Perveen, Najat A. Bukhari, Najla A. Alshaikh, Suresh Babu Kondaveeti, Jamilah A. Alsulami, Sandip Debnath, Vinoth Kumarasamy

Source: Frontiers in Microbiology, Vol 15 (2024)

Subject Terms: antibiotics, biotherapeutics, mangiferin, curcumin, synthetic biology, molecular docking, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2024.1304234/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/42c029fd4fcd472fa8e1a277d5f3c9d1

Enhancing drought tolerance in cauliflower (Brassica oleracea var. botrytis) by targeting LFY transcription factor modulation via the ethylene precursor, ACCA: an innovative computational approach

Authors: Sandip Debnath, Abdallah M. Elgorban, Ali H. Bahkali, Rajalakshmanan Eswaramoorthy, Meenakshi Verma, Asad Syed, Vetriselvan Subramaniyan, Chinnaperumal Kamaraj, Ling Shing Wong, Vinoth Kumarasamy

Source: Frontiers in Plant Science, Vol 15 (2024)

Subject Terms: cauliflower, drought tolerance, yield, ethylene precursor compound, ACCA, agricultural productivity, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2024.1255979/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/607d86025e894c1c9ec17e7d5c49d0e6

Understanding the cross-talk of major abiotic-stress-responsive genes in rice: A computational biology approach

Authors: Sandip Debnath, Shaik Aisha, Ayushman Malakar, Kahkashan Perveen, Alanoud T. Alfagham, Mehrun Nisha Khanam, Rabi'atul Adawiyah Ahmad, Biswajit Pramanik, Yahya Ahmed Mohammed

Source: Journal of King Saud University: Science, Vol 35, Iss 7, Pp 102786- (2023)

Subject Terms: Oryza sativa, Abiotic stress, Gene expression, Phylogenetic analysis, Protein-protein interaction, Transcription Factor, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1018364723002483; https://doaj.org/toc/1018-3647

Access URL: https://doaj.org/article/e89c2f31b08144c78b1666183ae149c0

Unveiling a novel terpolymer-metal complex: A detailed exploration of synthesis, characterization, and its potential as an antimicrobial and antioxidant agent

Authors: N. Mujafarkani, F.M. Mashood Ahamed, K. Suresh Babu, Sandip Debnath, Amany A. Sayed, Ghadeer M. Albadrani, Muath Q. Al-Ghadi, Vinoth Kumarasamy, Vetriselvan Subramaniyan, Chinnaperumal Kamaraj, Mohamed M. Abdel-Daim

Source: Heliyon, Vol 9, Iss 10, Pp e20459- (2023)

Subject Terms: Terpolymer, Polycondensation, Antimicrobial, Antioxidant, Science (General), Q1-390, Social sciences (General), H1-99

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2405844023076673; https://doaj.org/toc/2405-8440

Access URL: https://doaj.org/article/de17eeb1092a4c87871f0151cc819b89

Yield stability and economic heterosis analysis in newly bred sunflower hybrids throughout diverse agro-ecological zones

Authors: Nihar Ranjan Chakraborty, Shyam Sundar Lakshman, Sandip Debnath, Mehdi Rahimi

Source: BMC Plant Biology, Vol 22, Iss 1, Pp 1-13 (2022)

Subject Terms: Sunflower, Hybrids, Multi-location trials, G × E interaction, Seed and oil yield, Stability, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/c4ae0e8571f947488a0ed3929335ddf5