Noninvasive, label-free image approaches to predict multimodal molecular markers in pluripotency assessment

Authors: Ryutaro Akiyoshi, Takeshi Hase, Mayuri Sathiyananthavel, Samik Ghosh, Hiroaki Kitano, Ayako Yachie

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-14 (2024)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/0f230cfaa42c4db59cfafb33f567f7d3

A subnational reproductive, maternal, newborn, child, and adolescent health and development atlas of India

Authors: Carla Pezzulo, Natalia Tejedor-Garavito, Ho Man Theophilus Chan, Ilda Dreoni, David Kerr, Samik Ghosh, Amy Bonnie, Maksym Bondarenko, Mihretab Salasibew, Andrew J. Tatem

Source: Scientific Data, Vol 10, Iss 1, Pp 1-12 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2052-4463

Access URL: https://doaj.org/article/19085635c667410e8e0b018b5474ae88

Impact of market-based home fortification with micronutrient powder on childhood anemia in Bangladesh: a modified stepped wedge design

Authors: Haribondhu Sarma, Mahfuzur Rahman, Md. Tariqujjaman, Mohammad Ashraful Islam, Mduduzi N. N. Mbuya, Grant J. Aaron, Sufia Askari, Catherine Harbour, Rudaba Khondker, Moniruzzaman Bipul, Sabiha Sultana, Mohammad Ashikur Rahman, Shaima Arzuman Shahin, Morseda Chowdhury, Kaosar Afsana, Samik Ghosh, Cathy Banwell, Catherine D’Este, Mihretab Salasibew, Lynnette M. Neufeld, Tahmeed Ahmed

Source: Frontiers in Nutrition, Vol 10 (2024)

Subject Terms: home fortification, micronutrient powder, market-based program, anemia, children, Bangladesh, Nutrition. Foods and food supply, TX341-641

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fnut.2023.1271931/full; https://doaj.org/toc/2296-861X

Access URL: https://doaj.org/article/de147f37413a474bbdd7502a2fc6e3c9

Enabling Personalization for Digital Cognitive Stimulation to Support Communication With People With Dementia: Pilot Intervention Study as a Prelude to AI Development

Authors: Nick Hird, Tohmi Osaki, Samik Ghosh, Sucheendra K Palaniappan, Kiyoshi Maeda

Source: JMIR Formative Research, Vol 8, p e51732 (2024)

Subject Terms: Medicine

File Description: electronic resource

Relation: https://formative.jmir.org/2024/1/e51732; https://doaj.org/toc/2561-326X

Access URL: https://doaj.org/article/bc9064a878b840f69ec7518a85f646a9

AI-driven laboratory workflows enable operation in the age of social distancing

Authors: Diego Marescotti, Chandrasekaran Narayanamoorthy, Filipe Bonjour, Ken Kuwae, Luc Graber, Florian Calvino-Martin, Samik Ghosh, Julia Hoeng

Source: SLAS Technology, Vol 27, Iss 3, Pp 195-203 (2022)

Subject Terms: Laboratory planning, Machine learning, Biotechnology, TP248.13-248.65, Medical technology, R855-855.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2472630321000236; https://doaj.org/toc/2472-6303

Access URL: https://doaj.org/article/11459f9711734a6ca67ca9a155d42d09

Effectiveness of community-based treatment programs for treatment of uncomplicated severe acute malnourished children aged 6–59 months using locally produced nutrient dense foods: protocol for a multicentric longitudinal quasi-experimental study

Authors: Praveen Kumar, Rajesh Kumar Sinha, Abner Daniel, Hemang Shah, Raja Sriswan, Arun Kokane, Aditya Mohapatra, Vivek Kashyap, Anil Kumar Goel, Virendra Kumar, Asha Kiran, N. Arlappa, Ankur Joshi, Rashmi Ranjan Nayak, Manjula Singh, Mihretab Salasibew, Samik Ghosh, Sameer Manikrao Pawar, Preetu Mishra, Khyati Tiwari, Sourav Bhattacharjee, Farhat Saiyed, Tarun Shrikrishna Patel, Pritish Kumar Nayak, Sanjay Kumar Sahoo, Mahendra Prajapati, Shikha Sinha, Arjan de Wagt

Source: BMC Nutrition, Vol 7, Iss 1, Pp 1-9 (2021)

Subject Terms: Community based Management of Acute Malnutrition, Severe acute malnutrition, Locally produced nutrient dense food supplements, Cure rate, Body composition, Nutrition. Foods and food supply, TX341-641, Food processing and manufacture, TP368-456, Medicine (General), R5-920

File Description: electronic resource

Relation: https://doaj.org/toc/2055-0928

Access URL: https://doaj.org/article/c45f4788a23848c3b751109eee9aa309

Artificial intelligence-based computational framework for drug-target prioritization and inference of novel repositionable drugs for Alzheimer’s disease

Authors: Shingo Tsuji, Takeshi Hase, Ayako Yachie-Kinoshita, Taiko Nishino, Samik Ghosh, Masataka Kikuchi, Kazuro Shimokawa, Hiroyuki Aburatani, Hiroaki Kitano, Hiroshi Tanaka

Source: Alzheimer’s Research & Therapy, Vol 13, Iss 1, Pp 1-15 (2021)

Subject Terms: Network embedding, Deep learning, Machine learning, Systems biology, Drug discovery, Protein interaction network, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571, Neurology. Diseases of the nervous system, RC346-429

File Description: electronic resource

Relation: https://doaj.org/toc/1758-9193

Access URL: https://doaj.org/article/9f86af9cd7f64393aab1f2c94cd69a8e

Large scale text mining for deriving useful insights: A case study focused on microbiome

Authors: Syed Ashif Jardary Al Ahmed, Nishad Bapatdhar, Bipin Pradeep Kumar, Samik Ghosh, Ayako Yachie, Sucheendra K. Palaniappan

Source: Frontiers in Physiology, Vol 13 (2022)

Subject Terms: microbiome, text-mining, nlp, PubMed, word2vec, hypothesis generation, Physiology, QP1-981

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fphys.2022.933069/full; https://doaj.org/toc/1664-042X

Access URL: https://doaj.org/article/dde3906fe33549ae8a90b4173350817f

Evaluating the impact of a countrywide, market-based roll-out of multiple micronutrient supplementation on low birth weight in Bangladesh: protocol for a two-arm, quasi-experimental and mixed-methods evaluation study

Authors: Tahmeed Ahmed, Muttaquina Hossain, Sarah Gibson, Md Moshiur Rahman, Md Ahshanul Haque, Mduduzi N N Mbuya, Samik Ghosh, Sufia Aksari, Lynnette Neufeld, Moniruzzaman Bipul, Shahajahan Matubbar, Rudaba Khondker, Mihretab Salasibew, Kazi Istiaque Sanin

Source: BMJ Open, Vol 12, Iss 5 (2022)

Subject Terms: Medicine

File Description: electronic resource

Relation: https://bmjopen.bmj.com/content/12/5/e060230.full; https://doaj.org/toc/2044-6055

Access URL: https://doaj.org/article/eb147f3a36b2487293b13b8bbc6d1a20

Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis

Authors: Natalia Polouliakh, Paul Horton, Kazuhiro Shibanai, Kodai Takata, Vanessa Ludwig, Samik Ghosh, Hiroaki Kitano

Source: BMC Genomics, Vol 19, Iss 1, Pp 1-11 (2018)

Subject Terms: Comparative genomics, Transcription regulation, Gene network, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-018-5101-3; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/1ed2d794ade744e582c7148ee121d345

A Geometric Clustering Tool (AGCT) to robustly unravel the inner cluster structures of time-series gene expressions.

Authors: Richard Nock, Natalia Polouliakh, Frank Nielsen, Keigo Oka, Carlin R Connell, Cedric Heimhofer, Kazuhiro Shibanai, Samik Ghosh, Ken-Ichi Aisaki, Satoshi Kitajima, Jun Kanno, Taketo Akama, Hiroaki Kitano

Source: PLoS ONE, Vol 15, Iss 7, p e0233755 (2020)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/91362a9899e247a58166dd20a70f92e6

Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry

Authors: Etienne Caron, Romain Roncagalli, Takeshi Hase, Witold E. Wolski, Meena Choi, Marisa G. Menoita, Stephane Durand, Antonio García-Blesa, Ivo Fierro-Monti, Tatjana Sajic, Moritz Heusel, Tobias Weiss, Marie Malissen, Ralph Schlapbach, Ben C. Collins, Samik Ghosh, Hiroaki Kitano, Ruedi Aebersold, Bernard Malissen, Matthias Gstaiger

Source: Cell Reports, Vol 18, Iss 13, Pp 3219-3226 (2017)

Subject Terms: interactome, GRB2, primary T cells, targeted mass spectrometry, SWATH, DIA, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124717303364; https://doaj.org/toc/2211-1247

Access URL: https://doaj.org/article/31911a4435714e01a40ba461a4ca4dc4

Lenvatinib plus anti-PD-1 antibody combination treatment activates CD8+ T cells through reduction of tumor-associated macrophage and activation of the interferon pathway.

Authors: Yu Kato, Kimiyo Tabata, Takayuki Kimura, Ayako Yachie-Kinoshita, Yoichi Ozawa, Kazuhiko Yamada, Junichi Ito, Sho Tachino, Yusaku Hori, Masahiro Matsuki, Yukiko Matsuoka, Samik Ghosh, Hiroaki Kitano, Kenichi Nomoto, Junji Matsui, Yasuhiro Funahashi

Source: PLoS ONE, Vol 14, Iss 2, p e0212513 (2019)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/a3add2de47a44a519a9f34fb4324f9ca

Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure [version 2; referees: 2 approved]

Authors: Stéphanie Boué, Thomas Exner, Samik Ghosh, Vincenzo Belcastro, Joh Dokler, David Page, Akash Boda, Filipe Bonjour, Barry Hardy, Patrick Vanscheeuwijck, Julia Hoeng, Manuel Peitsch

Source: F1000Research, Vol 6 (2017)

Subject Terms: Data Sharing, Toxicology, Medicine, Science

File Description: electronic resource

Relation: https://f1000research.com/articles/6-12/v2; https://doaj.org/toc/2046-1402

Access URL: https://doaj.org/article/1eb426cd358c4e699f688f4d2eaef482

Seasonal Variation of PM2.5 and Its Major Ionic Components in an Urban Monitoring Site

Authors: Samik Ghosh, Zang-Ho Shon, Ki-Hyun Kim, Sang-Keun Song, Kweon Jung, Nam-Jin Kim

Source: Asian Journal of Atmospheric Environment, Vol 6, Iss 1, Pp 23-32 (2012)

Subject Terms: pm2.5, composition, seasonal, diurnal, source apportionment, Environmental technology. Sanitary engineering, TD1-1066, Environmental sciences, GE1-350

File Description: electronic resource

Relation: http://asianjae.org/_common/do.php?a=full&b=11&bidx=1573&aidx=19855; https://doaj.org/toc/1976-6912; https://doaj.org/toc/2287-1160

Access URL: https://doaj.org/article/f6b4f84e5b2447d5aa84434c9e7967dc

Some Insights into Analytical Bias Involved in the Application of Grab Sampling for Volatile Organic Compounds: A Case Study against Used Tedlar Bags

Authors: Samik Ghosh, Ki-Hyun Kim, Jong Ryeul Sohn

Source: The Scientific World Journal, Vol 11, Pp 2160-2177 (2011)

Subject Terms: Technology, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1537-744X

Access URL: https://doaj.org/article/b5cb2356861e4c4696ccdcc325923923

Seasonal and Diurnal Trend of Carbon Dioxide in a Mountainous Site in Seoul, Korea

Authors: Samik Ghosh, Kweon Jung, Eui Chan Jeon, Ki-Hyun Kim

Source: Asian Journal of Atmospheric Environment, Vol 4, Iss 3, Pp 166-176 (2010)

Subject Terms: carbon dioxide, mountain, continuous monitoring, urban area, anthropogenic, Environmental technology. Sanitary engineering, TD1-1066, Environmental sciences, GE1-350

File Description: electronic resource

Relation: http://asianjae.org/_common/do.php?a=full&b=11&bidx=1588&aidx=19986; https://doaj.org/toc/1976-6912; https://doaj.org/toc/2287-1160

Access URL: https://doaj.org/article/b99168d91bb7425dbb42bfc1c0216a03

A comprehensive map of the mTOR signaling network

Authors: Etienne Caron, Samik Ghosh, Yukiko Matsuoka, Dariel Ashton‐Beaucage, Marc Therrien, Sébastien Lemieux, Claude Perreault, Philippe P Roux, Hiroaki Kitano

Source: Molecular Systems Biology, Vol 6, Iss 1, Pp 1-14 (2010)

Subject Terms: cancer, CellDesigner, graphical notation, mTOR, regulatory network, Biology (General), QH301-705.5, Medicine (General), R5-920

File Description: electronic resource

Relation: https://doaj.org/toc/1744-4292

Access URL: https://doaj.org/article/95affcea89444816b50a1f70f39e5b9f

A comprehensive molecular interaction map of the budding yeast cell cycle

Authors: Kazunari Kaizu, Samik Ghosh, Yukiko Matsuoka, Hisao Moriya, Yuki Shimizu‐Yoshida, Hiroaki Kitano

Source: Molecular Systems Biology, Vol 6, Iss 1, Pp 1-11 (2010)

Subject Terms: comprehensive map, large‐scale network, yeast cell cycle, Biology (General), QH301-705.5, Medicine (General), R5-920

File Description: electronic resource

Relation: https://doaj.org/toc/1744-4292

Access URL: https://doaj.org/article/9f04acc2be0e48b0a2f4b9fda6b214f4

Combining machine learning systems and multiple docking simulation packages to improve docking prediction reliability for network pharmacology.

Authors: Kun-Yi Hsin, Samik Ghosh, Hiroaki Kitano

Source: PLoS ONE, Vol 8, Iss 12, p e83922 (2013)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24391846/pdf/?tool=EBI; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/4f097faf2dc64a90b8ac8a8ebc857a98