The baseline fecal microbiome differs in patients with and without anastomotic leakage after colorectal cancer surgery

Authors: Jørgensen, Anders Bech ^{a, b, ⁎}, Almer, Louise ^c, Samaniego Castruita, Jose Alfredo ^d, Pedersen, Martin Schou ^e, Kirkby, Nikolai Søren ^e, Jensen, Esther Agnete ^{f, g}, Alfaro-Núñez, Alonzo ^{f, h}, Friis-Hansen, Lennart ⁱ, Brandstrup, Birgitte ^{a, b}

Source: In Heliyon 15 December 2024 10(23)

Genomic analysis of 600 vancomycin-resistant Enterococcus faecium reveals a high prevalence of ST80 and spread of similar vanA regions via IS1216E and plasmid transfer in diverse genetic lineages in Ireland

Authors: Egan, Sarah A., Kavanagh, Nicole L., Shore, Anna C., Mollerup, Sarah, Samaniego Castruita, José A., O'Connell, Brian, McManus, Brenda A., Brennan, Grainne I., Pinholt, Mette, Westh, Henrik, Coleman, David C.

Source: Journal of antimicrobial chemotherapy. 77(2):320-330

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100139940645.0x000001&indx=1&recIds=ETOCvdc_100139940645.0x000001

Using in silico predicted ancestral genomes to improve the efficiency of paleogenome reconstruction

Authors: Garrett Vieira, Filipe, Samaniego Castruita, José Alfredo, Gilbert, M. Thomas P.

Source: Ecology and evolution. 10(23):12700-12709

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100110899906.0x000001&indx=1&recIds=ETOCvdc_100110899906.0x000001

Palaeogenomic insights into the origins of French grapevine diversity

Authors: Ramos-Madrigal, Jazmín, Runge, Anne Kathrine Wiborg, Bouby, Laurent, Lacombe, Thierry, Samaniego Castruita, José Alfredo, Adam-Blondon, Anne-Françoise, Figueiral, Isabel, Hallavant, Charlotte, Martínez-Zapater, José M., Schaal, Caroline, Töpfer, Reinhard, Petersen, Bent, Sicheritz-Pontén, Thomas, This, Patrice, Bacilieri, Roberto, Gilbert, M. Thomas P., Wales, Nathan

Source: Nature plants. 5(6):595-603

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131039947.0x000001&indx=1&recIds=ETOCvdc_100131039947.0x000001

The limits and potential of paleogenomic techniques for reconstructing grapevine domestication

Authors: Wales, Nathan, Ramos Madrigal, Jazmín, Cappellini, Enrico, Carmona Baez, Aldo, Samaniego Castruita, José Alfredo, Romero-Navarro, J. Alberto, Carøe, Christian, Ávila-Arcos, María C., Peñaloza, Fernando, Moreno-Mayar, J. Víctor, Gasparyan, Boris, Zardaryan, Diana, Bagoyan, Tamara, Smith, Alexia, Pinhasi, Ron, Bosi, Giovanna, Fiorentino, Girolamo, Grasso, Anna Maria, Celant, Alessandra, Bar-Oz, Guy, Tepper, Yotam, Hall, Allan, Scalabrin, Simone, Miculan, Mara, Morgante, Michele, Di Gaspero, Gabriele, Gilbert, M. Thomas P.

Source: In Journal of Archaeological Science August 2016 72:57-70

Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages

Authors: Ramos-Madrigal, Jazmín, Sinding, Mikkel-Holger S., Carøe, Christian, Mak, Sarah S.T., Niemann, Jonas, Samaniego Castruita, José A., Fedorov, Sergey, Kandyba, Alexander, Germonpré, Mietje, Bocherens, Hervé, Feuerborn, Tatiana R., Pitulko, Vladimir V., Pavlova, Elena Y., Nikolskiy, Pavel A., Kasparov, Aleksei K., Ivanova, Varvara V., Larson, Greger, Frantz, Laurent A.F., Willerslev, Eske, Meldgaard, Morten, Petersen, Bent, Sicheritz-Ponten, Thomas, Bachmann, Lutz, Wiig, Øystein, Hansen, Anders J., Gilbert, M. Thomas P., Gopalakrishnan, Shyam

Source: Current biology. 31(1):198-206.e8

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100132998237.0x000001&indx=1&recIds=ETOCvdc_100132998237.0x000001

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

Authors: Gopalakrishnan, Shyam, Sinding, Mikkel-Holger S., Ramos-Madrigal, Jazmín, Niemann, Jonas, Samaniego Castruita, Jose A., Vieira, Filipe G., Carøe, Christian, Montero, Marc de Manuel, Kuderna, Lukas, Serres, Aitor, González-Basallote, Víctor Manuel, Liu, Yan-Hu, Wang, Guo-Dong, Marques-Bonet, Tomas, Mirarab, Siavash, Fernandes, Carlos, Gaubert, Philippe, Koepfli, Klaus-Peter, Budd, Jane, Rueness, Eli Knispel, Sillero, Claudio, Heide-Jørgensen, Mads Peter, Petersen, Bent, Sicheritz-Ponten, Thomas, Bachmann, Lutz, Wiig, Øystein, Hansen, Anders J., Gilbert, M. Thomas P.

Source: In Current Biology 5 November 2018 28(21):3441-3449

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

Authors: Gopalakrishnan, Shyam, Sinding, Mikkel-Holger S., Ramos-Madrigal, Jazmín, Niemann, Jonas, Samaniego Castruita, Jose A., Vieira, Filipe G., Carøe, Christian, de Manuel Montero, Marc, Kuderna, Lukas, Serres, Aitor, González-Basallote, Víctor Manuel, Liu, Yan-Hu, Wang, Guo-Dong, Marques-Bonet, Tomas, Mirarab, Siavash, Fernandes, Carlos, Gaubert, Philippe, Koepfli, Klaus-Peter, Budd, Jane, Rueness, Eli Knispel, Sillero, Claudio, Heide-Jørgensen, Mads Peter, Petersen, Bent, Sicheritz-Ponten, Thomas, Bachmann, Lutz, Wiig, Øystein, Hansen, Anders J., Gilbert, M. Thomas P.

Source: In Current Biology 2 December 2019 29(23):4152-4152

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Impact of Holocene environmental change on the evolutionary ecology of an Arctic top predator.

Authors: Westbury, Michael V.¹ m.westbury@sund.ku.dk, Brown, Stuart C.^1,2,3, Lorenzen, Julie¹, O'Neill, Stuart², Scott, Michael B.⁴, McCuaig, Julia⁴, Cheung, Christina⁵, Armstrong, Edward⁶, Valdes, Paul J.⁷, Samaniego Castruita, José Alfredo¹, Cabrera, Andrea A.¹, Blom, Stine Keibel¹, Dietz, Rune^8,9, Sonne, Christian^8,9, Louis, Marie^1,10, Galatius, Anders⁹, Fordham, Damien A.^1,2, Ribeiro, Sofia^1,11, Szpak, Paul⁴, Lorenzen, Eline D.¹ elinelorenzen@sund.ku.dk

Source: Science Advances. 11/10/2023, Vol. 9 Issue 45, p1-12. 12p.

Subject Terms: *TUNDRAS, *TOP predators, *SEA ice, *POLAR bear, *OCEAN temperature, *HOLOCENE Epoch, *ECOLOGICAL models

Geographic Terms: ARCTIC regions, GREENLAND