Identification of New Rare Variants Associated With Familial Autoimmune Thyroid Diseases by Deep Sequencing of Linked Loci

Authors: Li, Cheuk Wun, Sachidanandam, Ravi, Jayaprakash, Anitha, Yi, Zhengzi, Zhang, Weijia, Stefan-Lifshitz, Mihaela, Concepcion, Erlinda, Tomer, Yaron

Source: Journal of clinical endocrinology & metabolism. 106(11):e4680-e4687

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100136538108.0x000001&indx=1&recIds=ETOCvdc_100136538108.0x000001

The Transient Human Thyroid Progenitor Cell: Examining the Thyroid Continuum from Stem Cell to Follicular Cell

Authors: Davies, Terry F., Latif, Rauf, Sachidanandam, Ravi, Ma, Risheng

Source: Thyroid. 31(8):1151-1159

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100124781617.0x000001&indx=1&recIds=ETOCvdc_100124781617.0x000001

Our current understanding of the biological impact of endometrial cancer mtDNA genome mutations and their potential use as a biomarker.

Authors: Khadka, Pabitra, Young, Carolyn K. J., Sachidanandam, Ravi, Brard, Laurent, Young, Matthew J.

Source: Frontiers in Oncology; 2024, p1-17, 17p

Subject Terms: LEBER'S hereditary optic atrophy, ENDOMETRIAL cancer, MITOCHONDRIAL DNA, SINGLE nucleotide polymorphisms, BIOMARKERS, GENOMES

Geographic Terms: UNITED States

Clonal Deletion of Tumor-Specific T Cells by Interferon-γ Confers Therapeutic Resistance to Combination Immune Checkpoint Blockade

Authors: Pai, Chien-Chun Steven, Huang, John T., Lu, Xiaoqing, Simons, Donald M., Park, Chanhyuk, Chang, Anthony, Tamaki, Whitney, Liu, Eric, Roybal, Kole T., Seagal, Jane, Chen, Mingyi, Hagihara, Katsunobu, Wei, Xiao X., DuPage, Michel, Kwek, Serena S., Oh, David Y., Daud, Adil, Tsai, Katy K., Wu, Clint, Zhang, Li, Fasso, Marcella, Sachidanandam, Ravi, Jayaprakash, Anitha, Lin, Ingrid, Casbon, Amy-Jo, Kinsbury, Gillian A., Fong, Lawrence

Source: In Immunity 19 February 2019 50(2):477-492

SHP2 Drives Adaptive Resistance to ERK Signaling Inhibition in Molecularly Defined Subsets of ERK-Dependent Tumors

Authors: Ahmed, Tamer A., Adamopoulos, Christos, Karoulia, Zoi, Wu, Xuewei, Sachidanandam, Ravi, Aaronson, Stuart A., Poulikakos, Poulikos I.

Source: In Cell Reports 2 January 2019 26(1):65-78

Diet Modifies Colonic Microbiota and CD4+ T-Cell Repertoire to Induce Flares of Colitis in Mice With Myeloid-Cell Expression of Interleukin 23

Authors: Chen, Lili, He, Zhengxiang, Iuga, Alina Cornelia, Martins Filho, Sebastião N., Faith, Jeremiah J., Clemente, Jose C., Deshpande, Madhura, Jayaprakash, Anitha, Colombel, Jean-Frederic, Lafaille, Juan J., Sachidanandam, Ravi, Furtado, Glaucia C., Lira, Sergio A.

Source: In Gastroenterology October 2018 155(4):1177-1191

Quiescent Tissue Stem Cells Evade Immune Surveillance

Authors: Agudo, Judith, Park, Eun Sook, Rose, Samuel A., Alibo, Eziwoma, Sweeney, Robert, Dhainaut, Maxime, Kobayashi, Koichi S., Sachidanandam, Ravi, Baccarini, Alessia, Merad, Miriam, Brown, Brian D.

Source: In Immunity 20 February 2018 48(2):271-285

Next Generation Sequencing of the Pig αβ TCR Repertoire Identifies the Porcine Invariant NKT Cell Receptor

Authors: Yang, Guan, Artiaga, Bianca L., Lomelino, Carrie L., Jayaprakash, Anitha D., Sachidanandam, Ravi, Mckenna, Robert, Driver, John P.

Source: Journal of immunology. 202(7):1981-1991

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN619515594&indx=1&recIds=ETOCRN619515594

Regulation of m6A Transcripts by the 3ʹ→5ʹ RNA Helicase YTHDC2 Is Essential for a Successful Meiotic Program in the Mammalian Germline

Authors: Wojtas, Magdalena Natalia, Pandey, Radha Raman, Mendel, Mateusz, Homolka, David, Sachidanandam, Ravi, Pillai, Ramesh S.

Source: In Molecular Cell 19 October 2017 68(2):374-387

Distinct Roles of RNA Helicases MVH and TDRD9 in PIWI Slicing-Triggered Mammalian piRNA Biogenesis and Function

Authors: Wenda, Joanna M., Homolka, David, Yang, Zhaolin, Spinelli, Pietro, Sachidanandam, Ravi, Pandey, Radha Raman, Pillai, Ramesh S.

Source: In Developmental Cell 19 June 2017 41(6):623-637

A High-Resolution Radiation Hybrid Map of the Human Genome Draft Sequence

Authors: Olivier, Michael, Aggarwal, Amita, Allen, Jennifer, Almendras, Annalisa A., Bajorek, Eva S., Beasley, Ellen M., Brady, Shannon D., Bushard, Jannette M., Bustos, Valerie I., Chu, Angela, Chung, Tisha R., de Witte, Anniek, Denys, Mirian E., Dominguez, Rakly, Fang, Nicole Y., Foster, Brian D., Freudenberg, Robert W., Hadley, David, Hamilton, Libby R., Jeffrey, Tonya J., Kelly, Libusha, Lazzeroni, Laura, Levy, Michelle R., Lewis, Saskia C., Liu, Xia, Lopez, Frederick J., Louie, Brent, Marquis, Joseph P., Martinez, Robert A., Matsuura, Margaret K., Misherghi, Nedda S., Norton, Jolanna A., Olshen, Adam, Perkins, Shanti M., Perou, Amy J., Piercy, Chris, Piercy, Mark, Qin, Fawn, Reif, Tim, Sheppard, Kelly, Shokoohi, Vida, Smick, Geoff A., Sun, Wei-Lin, Stewart, Elizabeth A., Tejeda, J. Fernando, Tran, Nguyet M., Trejo, Tonatiuh, Vo, Nu T., Zierten, Deborah L., Zhao, Shaying, Sachidanandam, Ravi, Trask, Barbara J., Myers, Richard M., Cox, David R.

Source: Science, 2001 Feb . 291(5507), 1298-1302.

Access URL: https://www.jstor.org/stable/3083493

Identification of Somatic Mitochondrial DNA Mutations, Heteroplasmy, and Increased Levels of Catenanes in Tumor Specimens Obtained from Three Endometrial Cancer Patients.

Authors: Young, Matthew J.^1,2 (AUTHOR) dhales@siumed.edu, Sachidanandam, Ravi³ (AUTHOR) ravi.mssm@gmail.com, Hales, Dale B.^1,2,4 (AUTHOR) krobinson@siumed.edu, Brard, Laurent^2,5 (AUTHOR) kgroesch@siumed.edu, Robinson, Kathy^2,6 (AUTHOR), Rahman, Md. Mostafijur¹ (AUTHOR) pabitra.khadka@siu.edu, Khadka, Pabitra¹ (AUTHOR) carolyn.young@siu.edu, Groesch, Kathleen^5,7 (AUTHOR), Young, Carolyn K. J.¹ (AUTHOR)

Source: Life (2075-1729). Apr2022, Vol. 12 Issue 4, pN.PAG-N.PAG. 20p.

Subject Terms: *MITOCHONDRIAL DNA, *SOMATIC mutation, *ENDOMETRIAL cancer, *CATENANES, *CANCER patients, *CANCER cell proliferation, *CANCER cell growth

Periodic Molecular Arrangements from Space Groups

Authors: Sachidanandam, Ravi, Harris, A. B.

Subject Terms: Condensed Matter

Access URL: http://arxiv.org/abs/cond-mat/9601151

Unperturbed expression bias of imprinted genes in schizophrenia

Authors: Gulyás-Kovács, Attila, Keydar, Ifat, Xia, Eva, Fromer, Menachem, Hoffman, Gabriel, Ruderfer, Douglas, Sachidanandam, Ravi, Chess, Andrew

Source: Nature communications. 9(1):1-9

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174169644.0x000001&indx=1&recIds=ETOCvdc_100174169644.0x000001

CRISPR-Barcoding for Intratumor Genetic Heterogeneity Modeling and Functional Analysis of Oncogenic Driver Mutations

Authors: Guernet, Alexis, Mungamuri, Sathish Kumar, Cartier, Dorthe, Sachidanandam, Ravi, Jayaprakash, Anitha, Adriouch, Sahil, Vezain, Myriam, Charbonnier, Françoise, Rohkin, Guy, Coutant, Sophie, Yao, Shen, Ainani, Hassan, Alexandre, David, Tournier, Isabelle, Boyer, Olivier, Aaronson, Stuart A., Anouar, Youssef, Grumolato, Luca

Source: In Molecular Cell 4 August 2016 63(3):526-538

PIWI Slicing and EXD1 Drive Biogenesis of Nuclear piRNAs from Cytosolic Targets of the Mouse piRNA Pathway

Authors: Yang, Zhaolin, Chen, Kuan-Ming, Pandey, Radha Raman, Homolka, David, Reuter, Michael, Janeiro, Bruno Kotska Rodino, Sachidanandam, Ravi, Fauvarque, Marie-Odile, McCarthy, Andrew A., Pillai, Ramesh S.

Source: In Molecular Cell 7 January 2016 61(1):138-152

PIWI Slicing and RNA Elements in Precursors Instruct Directional Primary piRNA Biogenesis

Authors: Homolka, David, Pandey, Radha Raman, Goriaux, Coline, Brasset, Emilie, Vaury, Chantal, Sachidanandam, Ravi, Fauvarque, Marie-Odile, Pillai, Ramesh S.

Source: In Cell Reports 21 July 2015 12(3):418-428

82. Can mitochondrial DNA mutations be used as a biomarker for endometrial cancer?

Authors: Khadka, Pabitra, Young, Carolyn, Sauerbrunn, Taryn, Groesch, Kathleen, Robinson, Kathy, Braundmeier-Fleming, Andrea, Sachidanandam, Ravi, Hales, Dale Buck, Brard, Laurent, Young, Matthew

Source: In Cancer Genetics November 2023 278-279 Supplement 1

RNA Clamping by Vasa Assembles a piRNA Amplifier Complex on Transposon Transcripts

Authors: Xiol, Jordi, Spinelli, Pietro, Laussmann, Maike A., Homolka, David, Yang, Zhaolin, Cora, Elisa, Couté, Yohann, Conn, Simon, Kadlec, Jan, Sachidanandam, Ravi, Kaksonen, Marko, Cusack, Stephen, Ephrussi, Anne, Pillai, Ramesh S.

Source: In Cell 19 June 2014 157(7):1698-1711

UHRF1 Overexpression Drives DNA Hypomethylation and Hepatocellular Carcinoma

Authors: Mudbhary, Raksha, Hoshida, Yujin, Chernyavskaya, Yelena, Jacob, Vinitha, Villanueva, Augusto, Fiel, M. Isabel, Chen, Xintong, Kojima, Kensuke, Thung, Swan, Bronson, Roderick T., Lachenmayer, Anja, Revill, Kate, Alsinet, Clara, Sachidanandam, Ravi, Desai, Anal, SenBanerjee, Sucharita, Ukomadu, Chinweike, Llovet, Josep M., Sadler, Kirsten C.

Source: In Cancer Cell 10 February 2014 25(2):196-209