Seeing the unseen in characterizing RNA editome during rice endosperm development

Authors: Ming Chen, Lin Xia, Xinyu Tan, Shenghan Gao, Sen Wang, Man Li, Yuansheng Zhang, Tianyi Xu, Yuanyuan Cheng, Yuan Chu, Songnian Hu, Shuangyang Wu, Zhang Zhang

Source: Communications Biology, Vol 7, Iss 1, Pp 1-13 (2024)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/4bc6f56aeae64f83b810d865883fef5c

Genomic insights on cgMLST markers, drug resistance, and urease cluster of Proteus mirabilis strains

Authors: Shitao Lian, Yadong Liu, Songnian Hu, Chen Shen, Yinping Ma, Peng Yin, Zilong He

Source: Microbiology Spectrum, Vol 13, Iss 1 (2025)

Subject Terms: Proteus mirabilis, cgMLST markers, drug-resistance, urease gene cluster, plasmid genome prediction, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/206260c058ad4e7a81486c3843fce5b7

Probing the diagnostic values of plasma cf-nDNA and cf-mtDNA for Parkinson’s disease and multiple system atrophy

Authors: Chao Ying, Yuan Li, Hui Zhang, Shimin Pang, Shuwen Hao, Songnian Hu, Lifang Zhao

Source: Frontiers in Neuroscience, Vol 18 (2024)

Subject Terms: circulating cell-free DNA, Parkinson’s disease, multiple system atrophy, biomarker, diagnosis, cell-free nuclear DNA, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fnins.2024.1488820/full; https://doaj.org/toc/1662-453X

Access URL: https://doaj.org/article/fb61e3eaa1524a25a7a8283aa1701239

Co-expression of a pair of interdependent regulators coding genes ovmZ and ovmW awakens the production of angucyclinones antibiotics in Streptomyces neyagawaensis

Authors: Junyue Li, Kai Wang, Sainan Luo, Yuqing Tian, Yue Li, Songnian Hu, Huarong Tan, Jihui Zhang, Jine Li

Source: Microbial Cell Factories, Vol 23, Iss 1, Pp 1-12 (2024)

Subject Terms: Transcriptional regulators, Angucyclinones, Activation of gene cluster, Streptomyces, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/1475-2859

Access URL: https://doaj.org/article/93c00ee620d946448a6e7920d68a8d3a

Genomic epidemiology reveals multiple mechanisms of linezolid resistance in clinical enterococci in China

Authors: Ziran Wang, Danping Liu, Jingjia Zhang, Lingli Liu, Zeming Zhang, Chang Liu, Songnian Hu, Linhuan Wu, Zilong He, Hongli Sun

Source: Annals of Clinical Microbiology and Antimicrobials, Vol 23, Iss 1, Pp 1-11 (2024)

Subject Terms: Enterococcus faecalis, Enterococcus faecium, Linezolid, optrA, Whole-genome sequencing, Therapeutics. Pharmacology, RM1-950, Infectious and parasitic diseases, RC109-216, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/1476-0711

Access URL: https://doaj.org/article/1aee854c51cd48efa518db4ee45b1e82

Single‐cell landscape revealed immune characteristics associated with disease phases in brucellosis patients

Authors: Yi Wang, Siyuan Yang, Bing Han, Xiufang Du, Huali Sun, Yufeng Du, Yinli Liu, Panpan Lu, Jinyu Di, Laurence Don Wai Luu, Xiao Lv, Songnian Hu, Linghang Wang, Rongmeng Jiang

Source: iMeta, Vol 3, Iss 4, Pp n/a-n/a (2024)

Subject Terms: Brucella infection, brucellosis, cytokine storm, immune response, single‐cell sequencing, Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: https://doaj.org/toc/2770-596X

Access URL: https://doaj.org/article/92a7675cc2434d6cbf8865b4d3b37aa1

Plasma level of alpha-synuclein oligomers as a biomarker for isolated rapid eye movement sleep behavior disorder diagnosis and progression: a prospective cohort study

Authors: Chao Ying, Hui Zhang, Ting Wang, Yuan Li, Wei Mao, Songnian Hu, Lifang Zhao, Yanning Cai

Source: Frontiers in Neurology, Vol 15 (2024)

Subject Terms: biomarkers, diagnosis, conversion, isolated rapid eye movement sleep behavior disorder, Parkinson’s disease, multiple system atrophy, Neurology. Diseases of the nervous system, RC346-429

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fneur.2024.1442173/full; https://doaj.org/toc/1664-2295

Access URL: https://doaj.org/article/65a18f161526499db4d243ed742bf6e7

Impact of LDLR polymorphisms on lipid levels and atorvastatin’s efficacy in a northern Chinese adult Han cohort with dyslipidemia

Authors: Hong-Liang Zhao, Yang You, Yan Tian, Luyan Wang, Yongqiang An, Guoqiang Zhang, Chang Shu, Mingxin Yu, Yihua Zhu, Qian Li, Yanwei Zhang, Ningling Sun, Songnian Hu, Gang Liu

Source: Lipids in Health and Disease, Vol 23, Iss 1, Pp 1-9 (2024)

Subject Terms: Pharmacogenetics, LDLR polymorphisms, Atorvastatin, Dyslipidemia, Han Chinese, Nutritional diseases. Deficiency diseases, RC620-627

File Description: electronic resource

Relation: https://doaj.org/toc/1476-511X

Access URL: https://doaj.org/article/bebc2842a18b427fb418391b6cc27ec2

A Meta-Analysis of the Human Gut Mycobiome Using Internal Transcribed Spacer Data

Authors: Zeming Zhang, Yining Zhang, Qixiang Yuan, Zuoyi Wang, Songnian Hu, Peng Yin, Zilong He

Source: Microorganisms, Vol 12, Iss 12, p 2567 (2024)

Subject Terms: gut mycobiome, ITS sequencing, meta-analysis, taxonomy classification, machine learning, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/12/12/2567; https://doaj.org/toc/2076-2607

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Dissecting and tracing the gut microbiota of infants with botulism: a cross sectional and longitudinal study

Authors: Dai Wang, Kexin Li, Lijuan Wang, Zhongqiu Teng, Xia Luo, Hui Sun, Ying Huang, Songnian Hu, Xuefang Xu, Zilong He

Source: Frontiers in Microbiology, Vol 15 (2024)

Subject Terms: infant botulism, 16S rRNA sequencing, whole genome sequencing, Bifidobacterium, longitudinal study, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2024.1416879/full; https://doaj.org/toc/1664-302X

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Toward A New Paradigm of Genomics Research

Authors: Zhang Zhang, Songnian Hu, Jun Yu

Source: Genomics, Proteomics & Bioinformatics, Vol 21, Iss 5, Pp 904-909 (2023)

Subject Terms: Genomics, Bioinformatics, BIG, CNCB, NGDC, Biology (General), QH301-705.5, Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1672022923001171; https://doaj.org/toc/1672-0229

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Comparative genomic analysis of Fusobacterium nucleatum reveals high intra-species diversity and cgmlst marker construction

Authors: Qianhui Zhu, Arslan Dovletgeldiyev, Chen Shen, Kexin Li, Songnian Hu, Zilong He

Source: Gut Pathogens, Vol 15, Iss 1, Pp 1-7 (2023)

Subject Terms: Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/1757-4749

Access URL: https://doaj.org/article/58c4d8c1295a483c96bde761ce79b41c

Anaerostipes hadrus, a butyrate-producing bacterium capable of metabolizing 5-fluorouracil

Authors: Danping Liu, Li-Sheng Xie, Shitao Lian, Kexin Li, Yun Yang, Wen-Zhao Wang, Songnian Hu, Shuang-Jiang Liu, Chang Liu, Zilong He

Source: mSphere, Vol 9, Iss 4 (2024)

Subject Terms: Anaerostipes hadrus, butyrate, 5-fluorouracil, pan-genomics, metagenomics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5042

Access URL: https://doaj.org/article/20d47976a9b24c2d9a06c406ce1deadd

Large-scale genomic survey and characterization of mcr genes carried by foodborne Cronobacter isolates

Authors: Qianhui Zhu, Jinrui Hu, Na Liu, Heyuan Qi, Xiaoli Du, Zhigang Cui, Yan Sun, Yadong Liu, Songnian Hu, Linhuan Wu, Haijian Zhou, Zilong He, Juncai Ma

Source: mSystems, Vol 8, Iss 5 (2023)

Subject Terms: Cronobacter, mcr genes, whole-genome sequencing, foodborne, flanking structures, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/9fd82adf752740209f492376e294bc2e

Plasmer: an Accurate and Sensitive Bacterial Plasmid Prediction Tool Based on Machine Learning of Shared k-mers and Genomic Features

Authors: Qianhui Zhu, Shenghan Gao, Binghan Xiao, Zilong He, Songnian Hu

Source: Microbiology Spectrum, Vol 11, Iss 3 (2023)

Subject Terms: plasmid, chromosome, machine learning, shared k-mers, genomic features, bacteria, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/4b1ae4a6dc874b05976ac15090ca608e

Amplicon-based sequencing and co-occurence network analysis reveals notable differences of microbial community structure in healthy and dandruff scalps

Authors: Li Wang, Tao Yu, Yaxin Zhu, Yingfeng Luo, Fan Dong, Xuemei Lin, Wenzhong Zhao, Zilong He, Songnian Hu, Zhiyang Dong

Source: BMC Genomics, Vol 23, Iss 1, Pp 1-16 (2022)

Subject Terms: Scalp, Dandruff, Microbiota, Co-occurrence/co-exclusion network, Malassezia sp., Lactobacillus sp, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/bff59dd6601a435298e95126e33449cf

Genome of the Giant Panda Roundworm Illuminates Its Host Shift and Parasitic Adaptation

Authors: Yue Xie, Sen Wang, Shuangyang Wu, Shenghan Gao, Qingshu Meng, Chengdong Wang, Jingchao Lan, Li Luo, Xuan Zhou, Jing Xu, Xiaobin Gu, Ran He, Zijiang Yang, Xuerong Peng, Songnian Hu, Guangyou Yang

Source: Genomics, Proteomics & Bioinformatics, Vol 20, Iss 2, Pp 366-381 (2022)

Subject Terms: Giant panda, Baylisascaris genome, Host shift, Parasitism evolution, Host adaptation, Biology (General), QH301-705.5, Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1672022921001728; https://doaj.org/toc/1672-0229

Access URL: https://doaj.org/article/581af1bc65f446c084e89f4c5e821784

gcCov: Linked open data for global coronavirus studies

Authors: Wenyu Shi, Guomei Fan, Zhihong Shen, Chuan Hu, Juncai Ma, Yuanchun Zhou, Zhen Meng, Songnian Hu, Yuhai Bi, Liang Wang, Haiying Yu, Siru Lin, Xiuqiang Sun, Xinjiao Zhang, Dongmei Liu, Qinlan Sun, Linhuan Wu

Source: mLife, Vol 1, Iss 1, Pp 92-95 (2022)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2770-100X

Access URL: https://doaj.org/article/197da5ae7fa0430183b2a790fa17763e

A food poisoning caused by ST7 Staphylococcal aureus harboring sea gene in Hainan province, China

Authors: Yahui Guo, Xiaojie Yu, Jixiao Wang, De Hua, Yuanhai You, Qingbo Wu, Qinglong Ji, Jianzhong Zhang, Liefei Li, Yuan Hu, Zhonghui Wu, Xiaoyue Wei, Lianqun Jin, Fanliang Meng, Yuhua Yang, Xiaofeng Hu, Lijin Long, Songnian Hu, Heyuan Qi, Juncai Ma, Wenwen Bei, Xiaomei Yan, Haibin Wang, Zilong He

Source: Frontiers in Microbiology, Vol 14 (2023)

Subject Terms: staphylococcus food poisoning, sequence type 7, whole-genome sequencing, enterotoxin A, prophage, plasmids, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2023.1110720/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/06531198079146a7825779359e7a618d

Gut microbiome and mycobiome in inflammatory bowel disease patients with Clostridioides difficile infection

Authors: Si Yu, Xiaomeng Ge, Hui Xu, Bei Tan, Bowen Tian, Yujie Shi, Yimin Dai, Yue Li, Songnian Hu, Jiaming Qian

Source: Frontiers in Cellular and Infection Microbiology, Vol 13 (2023)

Subject Terms: inflammatory bowel disease, Clostridioides difficile infection, metagenomics, gut microbiome, mycobiome, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2023.1129043/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/b695a7052b8040e4ab7f2f36552eb558