Glucose starvation induces a switch in the histone acetylome for activation of gluconeogenic and fat metabolism genes

Authors: Hsieh, Wen-Chuan, Sutter, Benjamin M., Ruess, Holly, Barnes, Spencer D., Malladi, Venkat S., Tu, Benjamin P.

Source: In Molecular Cell 6 January 2022 82(1):60-74

Genomic Analyses Yield Markers for Identifying Agronomically Important Genes in Potato

Authors: Li, Yangping, Colleoni, Christophe, Zhang, Junjie, Liang, Qiqi, Hu, Yufeng, Ruess, Holly, Simon, Reinhard, Liu, Yinghong, Liu, Hanmei, Yu, Guowu, Schmitt, Eric, Ponitzki, Chloé, Liu, Guangjian, Huang, Huanhuan, Zhan, Feilong, Chen, Lin, Huang, Yubi, Spooner, David, Huang, Binquan

Source: In Molecular Plant 5 March 2018 11(3):473-484

Analyses of 202 plastid genomes elucidate the phylogeny of Solanum section Petota

Authors: Huang, Binquan, Ruess, Holly, Liang, Qiqi, Colleoni, Christophe, Spooner, David

Source: Scientific reports. 9(1):1-7

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100128005906.0x000001&indx=1&recIds=ETOCvdc_100128005906.0x000001

Greatly reduced phylogenetic structure in the cultivated potato clade ( Solanum section Petota pro parte)

Authors: Spooner, David M., Ruess, Holly, Arbizu, Carlos I., Rodríguez, Flor, Solís-Lemus, Claudia

Source: American Journal of Botany, 2018 Jan 01. 105(1), 60-70.

Access URL: https://www.jstor.org/stable/26616869

Decoding Human Genome Regulatory Features That Influence HIV-1 Proviral Expression and Fate Through an Integrated Genomics Approach.

Authors: Ruess, Holly¹ (AUTHOR), Lee, Jeon¹ (AUTHOR), Guzman, Carlos^2,3 (AUTHOR), Malladi, Venkat S¹ (AUTHOR), D'Orso, Iván² (AUTHOR) Ivan.Dorso@utsouthwestern.edu

Source: Bioinformatics & Biology Insights. 2/26/2022, p1-17. 17p.

Subject Terms: *HUMAN genome, *HIV, *HIDDEN Markov models, *GENOMICS

Genotyping-by-sequencing reveals the origin of the Tunisian relatives of cultivated carrot (Daucus carota)

Authors: Mezghani, Najla, Ruess, Holly, Tarchoun, Neji, Ben Amor, Jihene, Simon, Philipp W., Spooner, David M.

Source: Genetic resources and crop evolution. 65(5):1359-1368

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100127530622.0x000001&indx=1&recIds=ETOCvdc_100127530622.0x000001

Entire plastid phylogeny of the carrot genus ( Daucus , Apiaceae) : Concordance with nuclear data and mitochondrial and nuclear DNA insertions to the plastid

Authors: Spooner, David M., Ruess, Holly, Iorizzo, Massimo, Senalik, Douglas, Simon, Philipp

Source: American Journal of Botany, 2017 Feb 01. 104(2), 296-312.

Access URL: https://www.jstor.org/stable/26410923

Integrated Molecular and Morphological Studies of the Daucus guttatus Complex (Apiaceae)

Authors: Arbizu, Carlos I., Simon, Philipp W., Martínez-Flores, Fernando, Ruess, Holly, Crespo, Manuel B., Spooner, David M.

Source: Systematic Botany, 2016 Apr 01. 41(2), 479-492.

Access URL: http://www.jstor.org/stable/43949569

What is truth: Consensus and discordance in next‐generation phylogenetic analyses of Daucus.

Authors: Spooner, David M.¹ (AUTHOR) david.spooner@usda.gov, Ruess, Holly¹ (AUTHOR), Ellison, Shelby¹ (AUTHOR), Senalik, Douglas¹ (AUTHOR), Simon, Philipp¹ (AUTHOR)

Source: Journal of Systematics & Evolution. Nov2020, Vol. 58 Issue 6, p1059-1070. 12p.

Subject Terms: *CARROTS, *NUCLEOTIDE sequencing, *PHYLOGENY, *DATA quality, *MOLECULAR phylogeny

Phylogenomics of the carrot genus (Daucus, Apiaceae)

Authors: Arbizu, Carlos, Ruess, Holly, Senalik, Douglas, Simon, Philipp W., Spooner, David M.

Source: American Journal of Botany, 2014 Oct 01. 101(10), 1666-1685.

Access URL: http://www.jstor.org/stable/43827178

The Drosophila ribosome protein S5 paralog RpS5b promotes germ cell and follicle cell differentiation during oogenesis.

Authors: Seoyeon Jang, Jeon Lee, Mathews, Jeremy, Ruess, Holly, Williford, Anna O., Rangan, Prashanth, Betrán, Esther, Buszczak, Michael

Source: Development (09501991); Oct2021, Vol. 148 Issue 19, p1-14, 14p

Subject Terms: GERM cells, CELL differentiation, DROSOPHILA, OOGENESIS, FEMALE infertility, HOMEOSTASIS, RIBOSOMES, POST-translational modification

Mitochondrial DNA Sequence Phylogeny of Daucus.

Authors: Spooner, David M.¹ (AUTHOR) david.spooner@ars.usda.gov, Ruess, Holly² (AUTHOR), Simon, Philipp¹ (AUTHOR), Senalik, Douglas¹ (AUTHOR)

Source: Systematic Botany. Apr-Jun2020, Vol. 45 Issue 2, p403-408. 6p.

Subject Terms: *NUCLEOTIDE sequence, *PHYLOGENY, *CHLOROPLAST DNA, *MOLECULAR phylogeny

Extended studies of interspecific relationships in Daucus (Apiaceae) using DNA sequences from ten nuclear orthologues.

Authors: Martínez-Flores, Fernando, Crespo, Manuel B, Geoffriau, Emmanuel, Allender, Charlotte, Ruess, Holly, Arbizu, Carlos I, Simon, Philipp, Spooner, David M

Source: Botanical Journal of the Linnean Society; Oct2019, Vol. 19 Issue 2, p164-187, 24p

Subject Terms: NUCLEOTIDE sequence, UMBELLIFERAE, HORDEUM, CARROTS, PARSIMONIOUS models

Geographic Terms: IBERIAN Peninsula

Genotyping-by-sequencing reveals the origin of the Tunisian relatives of cultivated carrot (Daucus carota).

Authors: Mezghani, Najla, Ruess, Holly, Tarchoun, Neji, Ben Amor, Jihene, Simon, Philipp W., Spooner, David M.

Source: Genetic Resources & Crop Evolution; Jun2018, Vol. 65 Issue 5, p1359-1368, 10p

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Subspecies Variation of Daucus carota Coastal ("Gummifer") Morphotypes (Apiaceae) Using Genotyping-by-Sequencing.

Authors: Martínez-Flores, Fernando¹ (AUTHOR) f.mart.flores@gmail.com, Crespo, Manuel B.¹ (AUTHOR), Simon, Philipp W.² (AUTHOR), Ruess, Holly^2,3 (AUTHOR), Reitsma, Kathleen⁴ (AUTHOR), Geoffriau, Emmanuel⁵ (AUTHOR), Allender, Charlotte⁶ (AUTHOR), Mezghani, Najla⁷ (AUTHOR), Spooner, David M.² (AUTHOR)

Source: Systematic Botany. Jul-Sep2020, Vol. 45 Issue 3, p688-702. 15p.

Subject Terms: *SUBSPECIES, *UMBELLIFERAE, *SHORT stature, *CARROTS, *EPITOPES

Geographic Terms: BALEARIC Islands (Spain)