Estimating taxonomic and functional structure along a tropical estuary: linking metabolic traits and aspects of ecosystem functioning

Authors: Héctor A. Levipan, L. Felipe Opazo, Sara Arenas-Uribe, Hernán Wicki, Francisca Marchant, Lennin Florez-Leiva, Ruben Avendaño-Herrera

Source: Microbiology Spectrum, Vol 12, Iss 10 (2024)

Subject Terms: Colombia’s Caribbean Sea, Atrato River, Gulf of Urabá, 16S amplicon sequencing, functional diversity, functional space, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/e303aa8f10254781beb76dd95cb41cd8

Proteomic Analysis of the Fish Pathogen Vibrio ordalii Strain Vo-LM-18 and Its Outer Membrane Vesicles

Authors: Macarena Echeverría-Bugueño, Mauricio Hernández, Ruben Avendaño-Herrera

Source: Animals, Vol 14, Iss 24, p 3598 (2024)

Subject Terms: vibriosis, proteome, salmonids, OMVs, Veterinary medicine, SF600-1100, Zoology, QL1-991

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2615/14/24/3598; https://doaj.org/toc/2076-2615

Access URL: https://doaj.org/article/d4daa14f03904cf190d12c3f7ef06436

Towards Sustainable Antibiotic Use in Aquaculture and Antimicrobial Resistance: Participatory Experts’ Overview and Recommendations

Authors: Daniela R. Farías, Rolando Ibarra, Rodrigo A. Estévez, Michael F. Tlusty, Oskar Nyberg, Max Troell, Ruben Avendaño-Herrera, Wendy Norden

Source: Antibiotics, Vol 13, Iss 9, p 887 (2024)

Subject Terms: antimicrobials, environmental impacts, sustainability, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.mdpi.com/2079-6382/13/9/887; https://doaj.org/toc/2079-6382

Access URL: https://doaj.org/article/700e5f6d733b40cb94cb5269f77ca53c

Unveiling Novel Kunitz- and Waprin-Type Toxins in the Micrurus mipartitus Coral Snake Venom Gland: An In Silico Transcriptome Analysis

Authors: Mónica Saldarriaga-Córdoba, Claudia Clavero-León, Paola Rey-Suarez, Vitelbina Nuñez-Rangel, Ruben Avendaño-Herrera, Stefany Solano-González, Juan F. Alzate

Source: Toxins, Vol 16, Iss 5, p 224 (2024)

Subject Terms: manual curations, Micrurus mipartitus, novel Kunitz-type inhibitor, KSPI, venom gland transcriptome, Medicine

File Description: electronic resource

Relation: https://www.mdpi.com/2072-6651/16/5/224; https://doaj.org/toc/2072-6651

Access URL: https://doaj.org/article/50c99cd6a1d54c12b114a757aaffa768

Tenacibaculosis caused by Tenacibaculum maritimum: Updated knowledge of this marine bacterial fish pathogen

Authors: Mahmoud Mabrok, Abdelazeem M. Algammal, Elayaraja Sivaramasamy, Helal F. Hetta, Banan Atwah, Saad Alghamdi, Aml Fawzy, Ruben Avendaño-Herrera, Channarong Rodkhum

Source: Frontiers in Cellular and Infection Microbiology, Vol 12 (2023)

Subject Terms: Tenacibaculum maritimum, tenacibaculosis, pathogenicity, marine fish, aquaculture, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2022.1068000/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/c7518c2291df443f8363343bdcafe4d4

Landscape dependency of land-based salmon farming under climate change

Authors: Jorge León-Muñoz, Rodrigo Aguayo, Doris Soto, Ruben Avendaño-Herrera, Jorge Nimptsch, Stefan Wolfl, Jeanne Simon, Cristian Echeverría, Mauricio Aguayo, Cesar Salazar, Oscar Garay, Sage Fox

Source: Climate Risk Management, Vol 40, Iss , Pp 100504- (2023)

Subject Terms: Climate change, Land cover change, Watersheds, Salmon farming, Risk analysis, Chile, Meteorology. Climatology, QC851-999

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S221209632300030X; https://doaj.org/toc/2212-0963

Access URL: https://doaj.org/article/d89062add5b0447c8c658db9b8a15efe

Collective behavior and virulence arsenal of the fish pathogen Piscirickettsia salmonis in the biofilm realm

Authors: Héctor A. Levipan, Rute Irgang, L. Felipe Opazo, Henry Araya-León, Ruben Avendaño-Herrera

Source: Frontiers in Cellular and Infection Microbiology, Vol 12 (2022)

Subject Terms: piscirickettsiosis, RNA sequencing, biofilm cell viability, exopolymeric matrix, cytotoxicity, aquaculture, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2022.1067514/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/02b64e666a5946979032d4715733d168

Effects of crowding on the three main proteolytic mechanisms of skeletal muscle in rainbow trout (Oncorhynchus mykiss)

Authors: Cristián A. Valenzuela, Claudia Ponce, Rodrigo Zuloaga, Pamela González, Ruben Avendaño-Herrera, Juan A. Valdés, Alfredo Molina

Source: BMC Veterinary Research, Vol 16, Iss 1, Pp 1-11 (2020)

Subject Terms: Fish, Stress response, Autophagy, Ubiquitin-proteasome, Calpain/calpastatin, Veterinary medicine, SF600-1100

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12917-020-02518-w; https://doaj.org/toc/1746-6148

Access URL: https://doaj.org/article/11c6f9cf641d460688f057bc38d8ab55

Commentary: Piscirickettsia salmonis Produces a N-Acetyl-L-Homoserine Lactone as a Bacterial Quorum Sensing System-Related Molecule

Authors: Héctor A. Levipan, Luis Reyes-Garcia, Ruben Avendaño-Herrera

Source: Frontiers in Cellular and Infection Microbiology, Vol 12 (2022)

Subject Terms: Piscirickettsia salmonis, SRS, Piscirickettsiosis, quorum sensing (QS), N-acetyl-L-homoserine Lactone, N-acyl-homoserine lactone (AHL), Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2022.858387/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/99eab56dfa184d1394af56d88c134933

Transcriptomic Profiling of the Adaptive and Innate Immune Responses of Atlantic Salmon to Renibacterium salmoninarum Infection

Authors: Khalil Eslamloo, Albert Caballero-Solares, Sabrina M. Inkpen, Mohamed Emam, Surendra Kumar, Camila Bouniot, Ruben Avendaño-Herrera, Eva Jakob, Matthew L. Rise

Source: Frontiers in Immunology, Vol 11 (2020)

Subject Terms: Bacterial Kidney Disease (BKD), Salmo salar, microarray, antibacterial responses, teleost, infection level, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2020.567838/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/095be22b6c59496fb1e67625219df267

First Identification and Characterization of Lactococcus garvieae Isolated from Rainbow Trout (Oncorhynchus mykiss) Cultured in Mexico

Authors: Cesar Ortega, Rute Irgang, Benjamín Valladares-Carranza, Constanza Collarte, Ruben Avendaño-Herrera

Source: Animals, Vol 10, Iss 9, p 1609 (2020)

Subject Terms: Lactococcus garvieae, rainbow trout, emerging disease, hemorrhagic septicemia lactococcosis, challenge assay, Veterinary medicine, SF600-1100, Zoology, QL1-991

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2615/10/9/1609; https://doaj.org/toc/2076-2615

Access URL: https://doaj.org/article/740c59aadbad44d0ad04bbb06a0d8aa2

Microbial Communities Associated with Farmed Genypterus chilensis: Detection in Water Prior to Bacterial Outbreaks Using Culturing and High-Throughput Sequencing

Authors: Arturo Levican, Jenny C. Fisher, Sandra L. McLellan, Ruben Avendaño-Herrera

Source: Animals, Vol 10, Iss 6, p 1055 (2020)

Subject Terms: Genypterus chilensis, Vibrio spp., Tenacibaculum spp., high throughput sequencing, plate counting, Veterinary medicine, SF600-1100, Zoology, QL1-991

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2615/10/6/1055; https://doaj.org/toc/2076-2615

Access URL: https://doaj.org/article/fa0a70fbf0a44465a3417ffc32c9da8d

Genomic Diversity and Evolution of the Fish Pathogen Flavobacterium psychrophilum

Authors: Eric Duchaud, Tatiana Rochat, Christophe Habib, Paul Barbier, Valentin Loux, Cyprien Guérin, Inger Dalsgaard, Lone Madsen, Hanne Nilsen, Krister Sundell, Tom Wiklund, Nicole Strepparava, Thomas Wahli, Greta Caburlotto, Amedeo Manfrin, Gregory D. Wiens, Erina Fujiwara-Nagata, Ruben Avendaño-Herrera, Jean-François Bernardet, Pierre Nicolas

Source: Frontiers in Microbiology, Vol 9 (2018)

Subject Terms: Flavobacterium psychrophilum, aquaculture, fish-pathogenic bacteria, comparative genomics, clonal-complex, homologous recombination, Microbiology, QR1-502

File Description: electronic resource

Relation: http://journal.frontiersin.org/article/10.3389/fmicb.2018.00138/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/7a08e637ae4d452d99879b8263d6404b

Stress Tolerance-Related Genetic Traits of Fish Pathogen Flavobacterium psychrophilum in a Mature Biofilm

Authors: Héctor A. Levipan, Johan Quezada, Ruben Avendaño-Herrera

Source: Frontiers in Microbiology, Vol 9 (2018)

Subject Terms: Flavobacterium psychrophilum, fish pathogen, gene expression, RNA sequencing, planktonic cells, sessile cells, Microbiology, QR1-502

File Description: electronic resource

Relation: http://journal.frontiersin.org/article/10.3389/fmicb.2018.00018/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/fa2e0971a1f8435d8af66e98033adfdd

The Proteome of Biologically Active Membrane Vesicles from Piscirickettsia salmonis LF-89 Type Strain Identifies Plasmid-Encoded Putative Toxins

Authors: Cristian Oliver, Mauricio A. Hernández, Julia I. Tandberg, Karla N. Valenzuela, Leidy X. Lagos, Ronie E. Haro, Patricio Sánchez, Pamela A. Ruiz, Constanza Sanhueza-Oyarzún, Marcos A. Cortés, María T. Villar, Antonio Artigues, Hanne C. Winther-Larsen, Ruben Avendaño-Herrera, Alejandro J. Yáñez

Source: Frontiers in Cellular and Infection Microbiology, Vol 7 (2017)

Subject Terms: Piscirickettsia salmonis, SRS, bacterial toxins, mass spectrometry, MudPIT, zebrafish, Microbiology, QR1-502

File Description: electronic resource

Relation: http://journal.frontiersin.org/article/10.3389/fcimb.2017.00420/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/61229a396f434c13b6a2e4196f8460cb

Subcellular Location of Piscirickettsia salmonis Heat Shock Protein 60 (Hsp60) Chaperone by Using Immunogold Labeling and Proteomic Analysis

Authors: Cristian Oliver, Patricio Sánchez, Karla Valenzuela, Mauricio Hernández, Juan Pablo Pontigo, Maria C. Rauch, Rafael A. Garduño, Ruben Avendaño-Herrera, Alejandro J. Yáñez

Source: Microorganisms, Vol 8, Iss 1, p 117 (2020)

Subject Terms: piscirickettsia salmonis, srs, fish pathology, igy, vaccination, secretion systems, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/8/1/117; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/5353a924d17841fa93aa1e42e5603828

The Fish Pathogen Vibrio ordalii Under Iron Deprivation Produces the Siderophore Piscibactin

Authors: Pamela Ruiz, Miguel Balado, Juan Carlos Fuentes-Monteverde, Alicia E. Toranzo, Jaime Rodríguez, Carlos Jiménez, Ruben Avendaño-Herrera, Manuel L. Lemos

Source: Microorganisms, Vol 7, Iss 9, p 313 (2019)

Subject Terms: Vibrio ordalii, fish pathogens, iron uptake, siderophores, piscibactin, vanchrobactin, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/7/9/313; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/33852c0165c94fcfbe4cc3b43330e113

Neutrophil Migration in the Activation of the Innate Immune Response to Different Flavobacterium psychrophilum Vaccines in Zebrafish (Danio rerio)

Authors: Camila J. Solís, Matías Poblete-Morales, Sergio Cabral, Juan A. Valdés, Ariel E. Reyes, Ruben Avendaño-Herrera, Carmen G. Feijóo

Source: Journal of Immunology Research, Vol 2015 (2015)

Subject Terms: Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://doaj.org/toc/2314-8861; https://doaj.org/toc/2314-7156

Access URL: https://doaj.org/article/5fc85bac42f24059a678d0cf199516a3

Soybean meal induces intestinal inflammation in zebrafish larvae.

Authors: Manuel I Hedrera, Jorge A Galdames, Maria F Jimenez-Reyes, Ariel E Reyes, Ruben Avendaño-Herrera, Jaime Romero, Carmen G Feijóo

Source: PLoS ONE, Vol 8, Iss 7, p e69983 (2013)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3720926?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/a674f4fdaf3c4a858637b920a8f59344

Protein-Based Vaccine Protect Against Piscirickettsia salmonis in Atlantic Salmon (Salmo salar)

Authors: Juan Pablo Pontigo, Carla Espinoza, Mauricio Hernandez, Guillermo Nourdin, Cristian Oliver, Rubén Avendaño-Herrera, Jaime Figueroa, Cecilia Rauch, José M. Troncoso, Luis Vargas-Chacoff, Alejandro J. Yáñez

Source: Frontiers in Immunology, Vol 12 (2021)

Subject Terms: Piscirickettsia salmonis, Atlantic salmon, innate immunity, vaccine, proteome, IgM, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2021.602689/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/9a57f85f4430414084f7b88967d9767f