Consensus Clustering Strategy for Cell Type Assignments of scRNA-seq Data

Authors: Riva, Simone G., Myers, Brynelle, Cazzaniga, Paolo, Buffa, Francesca M., Tangherloni, Andrea

Source: 2023 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2023 IEEE Conference on. :1-8 Aug, 2023

Relation: 2023 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)

A Deep Learning Pipeline for the Automatic cell type Assignment of scRNA-seq Data

Authors: Riva, Simone G., Myers, Brynelle, Cazzaniga, Paolo, Tangherloni, Andrea

Source: 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2022 IEEE Conference on. :1-8 Aug, 2022

Relation: 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)

Predicting and Characterizing Legal Claims of Hospitals with Computational Intelligence: the Legal and Ethical Implications

Authors: Gallese, Chiara, Fuchs, Caro, Riva, Simone G., Foglia, Emanuela, Schettini, Fabrizio, Ferrario, Lucrezia, Falletti, Elena, Nobile, Marco S.

Source: 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2022 IEEE Conference on. :1-9 Aug, 2022

Relation: 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)

Multi-objective Optimization for Marker Panel Identification in Single-cell Data

Authors: Tangherloni, Andrea, Riva, Simone G., Myers, Brynelle, Cazzaniga, Paolo

Source: 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2022 IEEE Conference on. :1-8 Aug, 2022

Relation: 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)

Integration of Multiple scRNA-Seq Datasets on the Autoencoder Latent Space

Authors: Riva, Simone G., Cazzaniga, Paolo, Tangherloni, Andrea

Source: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2021 IEEE International Conference on. :2155-2162 Dec, 2021

Relation: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

The Impact of Representation on the Optimization of Marker Panels for Single-cell RNA Data

Authors: Tangherloni, Andrea, Riva, Simone G., Spolaor, Simone, Besozzi, Daniela, Nobile, Marco S., Cazzaniga, Paolo

Source: 2021 IEEE Congress on Evolutionary Computation (CEC) Evolutionary Computation (CEC), 2021 IEEE Congress on. :1423-1430 Jun, 2021

Relation: 2021 IEEE Congress on Evolutionary Computation (CEC)

MAGNETO: Cell type marker panel generator from single-cell transcriptomic data

Authors: Tangherloni, Andrea, Riva, Simone G., Myers, Brynelle, Buffa, Francesca M., Cazzaniga, Paolo

Source: In Journal of Biomedical Informatics November 2023 147

GTAC enables parallel genotyping of multiple genomic loci with chromatin accessibility profiling in single cells

Authors: Turkalj, Sven, Jakobsen, Niels Asger, Groom, Angus, Metzner, Marlen, Riva, Simone G., Gür, E. Ravza, Usukhbayar, Batchimeg, Salazar, Mirian Angulo, Hentges, Lance D., Mickute, Gerda, Clark, Kevin, Sopp, Paul, Davies, James O.J., Hughes, Jim R., Vyas, Paresh

Source: In Cell Stem Cell 4 May 2023 30(5):722-740

SMGen: A Generator of Synthetic Models of Biochemical Reaction Networks.

Authors: Riva, Simone G.^1,2 (AUTHOR) simone.riva@imm.ox.ac.uk, Cazzaniga, Paolo^3,4,5 (AUTHOR) m.s.nobile@tue.nl, Nobile, Marco S.^4,5,6 (AUTHOR), Spolaor, Simone^1,4 (AUTHOR) daniela.besozzi@unimib.it, Rundo, Leonardo^7,8 (AUTHOR) lr495@cam.ac.uk, Besozzi, Daniela^1,4,5 (AUTHOR), Tangherloni, Andrea³ (AUTHOR) simone.riva@imm.ox.ac.uk

Source: Symmetry (20738994). Jan2022, Vol. 14 Issue 1, p119-119. 1p.

Subject Terms: *BIOCHEMICAL models, *NUMBERS of species, *SYSTEMS biology, *COMPUTATIONAL biology, *UNDIRECTED graphs