Modeling of arylamide helix mimetics in the p53 peptide binding site of hDM2 suggests parallel and anti-parallel conformations are both stable.

Authors: Jonathan C Fuller, Richard M Jackson, Thomas A Edwards, Andrew J Wilson, Michael R Shirts

Source: PLoS ONE, Vol 7, Iss 8, p e43253 (2012)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3423354?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/4c28ca84744e47e8a02287042e4cbf87

The Mycobacterium tuberculosis drugome and its polypharmacological implications.

Authors: Sarah L Kinnings, Li Xie, Kingston H Fung, Richard M Jackson, Lei Xie, Philip E Bourne

Source: PLoS Computational Biology, Vol 6, Iss 11, p e1000976 (2010)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC2973814?pdf=render; https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/9d7e50e9604747308be03bcf29a26639

A Machine Learning-Based Method To Improve Docking Scoring Functions and Its Application to Drug Repurposing.

Authors: Sarah L. Kinnings¹, Nina Liu¹, Peter J. Tonge¹, Richard M. Jackson¹, Lei Xie¹, Philip E. Bourne¹

Source: Journal of Chemical Information & Modeling; Feb2011, Vol. 51 Issue 2, p408-419, 12p

Toward the Discovery of Functional Transthyretin Amyloid Inhibitors: Application of Virtual Screening Methods.

Authors: Carlos J. V. Simões¹, Trishna Mukherjee¹, Rui M. M. Brito¹, Richard M. Jackson¹

Source: Journal of Chemical Information & Modeling; Oct2010, Vol. 50 Issue 10, p1806-1820, 15p

Binding Site Similarity Analysis for the Functional Classification of the Protein Kinase Family.

Authors: Sarah L. Kinnings¹, Richard M. Jackson¹

Source: Journal of Chemical Information & Modeling; Feb2009, Vol. 49 Issue 2, p318-329, 12p

Information Theory-Based Scoring Function for the Structure-Based Prediction of Protein−Ligand Binding Affinity.

Authors: Mahesh Kulharia¹, Roger S. Goody¹, Richard M. Jackson¹

Source: Journal of Chemical Information & Modeling; Sep2008, Vol. 48 Issue 10, p1990-1998, 9p

Structure-based evaluation of in silico predictions of protein–protein interactions using Comparative Docking.

Authors: Simon J. Cockell¹, Baldo Oliva¹, Richard M. Jackson¹

Source: Bioinformatics; Mar2007, Vol. 23 Issue 5, p573-581, 9p

Predicting protein interaction sites: binding hot-spots in protein–protein and protein–ligand interfaces.

Authors: Richard M. Jackson

Source: Bioinformatics; Jun2006, Vol. 22 Issue 11, p1335-1342, 8p

Prediction of protein–protein interactions using distant conservation of sequence patterns and structure relationships.

Authors: Jordi Espadaler, Oriol Romero-Isart, Richard M. Jackson, Baldo Oliva

Source: Bioinformatics; Aug2005, Vol. 21 Issue 16, p3360-3368, 9p

Q-SiteFinder: an energy-based method for the prediction of proteinligand binding sites.

Authors: Alasdair T. R. Laurie, Richard M. Jackson

Source: Bioinformatics; May2005, Vol. 21 Issue 9, p1908-1916, 9p

Correction to “A Machine Learning-Based Method To Improve Docking Scoring Functions and Its Application to Drug Repurposing”.

Authors: Sarah L. Kinnings¹, Nina Liu¹, Peter J. Tonge¹, Richard M. Jackson¹, Lei Xie¹, Philip E. Bourne¹

Source: Journal of Chemical Information & Modeling; May2011, Vol. 51 Issue 5, p1195-1197, 3p

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An evaluation of automated homology modelling methods at low target template sequence similarity.

Authors: James A. R. Dalton, Richard M. Jackson

Source: Bioinformatics. Aug2007, Vol. 23 Issue 15, p1901-1901. 1p.

Subject Terms: *HOMOLOGY (Biology), *STICCADO pastorale, *BIOINFORMATICS, *BIOLOGICAL classification

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