Structural characterization of the POTRA domains from A. baumannii reveals new conformations in BamA

Authors: Cottom, Claire Overly, Stephenson, Robert, Ricci, Dante, Yang, Lixinhao, Gumbart, James C., Noinaj, Nicholas

Source: In Structure 7 November 2024 32(11):2038-2048

Toxin-Antitoxin Systems Reflect Community Interactions Through Horizontal Gene Transfer.

Authors: Bethke, Jonathan H, Kimbrel, Jeffrey, Jiao, Yongqin, Ricci, Dante

Source: Molecular Biology & Evolution; Oct2024, Vol. 41 Issue 10, p1-12, 12p

Subject Terms: HORIZONTAL gene transfer, GENE regulatory networks, BACTERIAL evolution, BACTERIAL communities, PLASMIDS

GENTANGLE: integrated computational design of gene entanglements.

Authors: Martí, Jose Manuel¹, martimartine1@llnl.gov, Hsu, Chloe², Rochereau, Charlotte³, Xu, Chenling⁴, Blazejewski, Tomasz³, Nisonoff, Hunter², Leonard, Sean P⁴, Kang-Yun, Christina S⁴, Chlebek, Jennifer⁴, Ricci, Dante P⁴, Park, Dan⁴, Wang, Harris³, Listgarten, Jennifer², Jiao, Yongqin⁴, Allen, Jonathan E¹, martimartine1@llnl.gov

Source: Bioinformatics; Jul2024, Vol. 40 Issue 7, p1-4, 4p

Inhibitor of intramembrane protease RseP blocks the σ E response causing lethal accumulation of unfolded outer membrane proteins

Authors: Konovalova, Anna, Grabowicz, Marcin, Balibar, Carl J., Malinverni, Juliana C., Painter, Ronald E., Riley, Daniel, Mann, Paul A., Wang, Hao, Garlisi, Charles G., Sherborne, Brad, Rigel, Nathan W., Ricci, Dante P., Black, Todd A., Roemer, Terry, Silhavy, Thomas J., Walker, Scott S.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2018 Jul 01. 115(28), E6614-E6621.

Access URL: https://www.jstor.org/stable/26510943

Computationally restoring the potency of a clinical antibody against Omicron.

Authors: Desautels, Thomas A., Arrildt, Kathryn T., Zemla, Adam T., Lau, Edmond Y., Zhu, Fangqiang, Ricci, Dante, Cronin, Stephanie, Zost, Seth J., Binshtein, Elad, Scheaffer, Suzanne M., Dadonaite, Bernadeta, Petersen, Brenden K., Engdahl, Taylor B., Chen, Elaine, Handal, Laura S., Hall, Lynn, Goforth, John W., Vashchenko, Denis, Nguyen, Sam, Weilhammer, Dina R.

Source: Nature; May2024, Vol. 629 Issue 8013, p878-885, 8p

Cell cycle progression in Caulobacter requires a nucleoid-associated protein with high AT sequence recognition

Authors: Ricci, Dante P., Melfi, Michael D., Lasker, Keren, Dill, David L., McAdams, Harley H., Shapiro, Lucy

Source: Proceedings of the National Academy of Sciences of the United States of America, 2016 Oct 01. 113(40), E5952-E5961.

Access URL: https://www.jstor.org/stable/26471975

Construction and Characterization of an E. coli bamD Depletion Strain

Authors: Ricci, Dante P.

Source: Methods in molecular biology. 1329:227-244

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN603406540&indx=1&recIds=ETOCRN603406540

Conformation-specific labeling of BamA and suppressor analysis suggest a cyclic mechanism for β-barrel assembly in Escherichia coli

Authors: Rigel, Nathan W., Ricci, Dante P., Silhavy, Thomas J.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2013 Mar . 110(13), 5151-5156.

Access URL: https://www.jstor.org/stable/42583425

Prolonging genetic circuit stability through adaptive evolution of overlapping genes.

Authors: Chlebek, Jennifer L, Leonard, Sean P, Kang-Yun, Christina, Yung, Mimi C, Ricci, Dante P, Jiao, Yongqin, Park, Dan M

Source: Nucleic Acids Research; 7/21/2023, Vol. 51 Issue 13, p7094-7108, 15p

Activation of the Escherichia coli β-barrel assembly machine (Bam) is required for essential components to interact properly with substrate

Authors: Ricci, Dante P., Hagan, Christine L., Kahne, Daniel, Silhavy, Thomas J.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2012 Feb . 109(9), 3487-3491.

Access URL: https://www.jstor.org/stable/41506977

The Bam machine: A molecular cooper

Authors: Ricci, Dante P., Silhavy, Thomas J.

Source: In BBA - Biomembranes April 2012 1818(4):1067-1084

Elocutiones, quae in Epistolis familiaribus Ciceronis leguntur a Dante Riccio excerptae, nunc vero al Hercule Ciofano Sulmonense, summa cum diligentia recognitae

Authors: Ricci, Dante

Contributors: Cicero, Marcus Tullius, Ciofano, Ercole, Ziletti, Francesco

Availability: http://data.europeana.eu/aggregation/europeana/881/https___hispana_mcu_es_lod_oai_repositorio_uloyola_es_20_500_12412____6070_ent0

iPS, Methods to Produce

Authors: Ricci, Dante

Source: The SAGE Encyclopedia of Stem Cell Research: H-R. 2015, p599-602.

Comparison of Kill Switch Toxins in Plant-Beneficial Pseudomonas fluorescens Reveals Drivers of Lethality, Stability, and Escape.

Authors: Halvorsen, Tiffany M., Ricci, Dante P., Park, Dan M., Jiao, Yongqin, Yung, Mimi C.

Source: ACS Synthetic Biology; 11/18/2022, Vol. 11 Issue 11, p3785-3796, 12p

Predicting Functionally Informative Mutations in Escherichia coli BamA Using Evolutionary Covariance Analysis.

Authors: Dwyer, Robert S.¹, Ricci, Dante P.¹, Colwell, Lucy J.^2,3, Silhavy, Thomas J.¹, Wingreen, Ned S.⁴, wingreen@princeton.edu

Source: Genetics; 10/1/2013, Vol. 195 Issue 2, p443-12SI, 24p

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Outer Membrane Protein Insertion by the β-barrel Assembly Machine.

Authors: RICCI, DANTE P., SILHAVY, THOMAS J.

Source: EcoSal Plus; 2019, Vol. 8 Issue 2, p1-9, 9p

Inhibitor of intramembrane protease RseP blocks the σ^E response causing lethal accumulation of unfolded outer membrane proteins.

Authors: Silhavy, Thomas J., Konovalova, Anna, Grabowicz, Marcin, Rigel, Nathan W., Ricci, Dante P., Balibar, Carl J., Malinverni, Juliana C., Painter, Ronald E., Riley, Daniel, Mann, Paul A., Hao Wang, Sherborne, Brad, Black, Todd A., Walker, Scott S., Roemer, Terry, Garlisi, Charles G.

Source: Proceedings of the National Academy of Sciences of the United States of America; 7/10/2018, Vol. 115 Issue 28, pE6614-E6621, 8p

Subject Terms: GRAM-negative bacteria, ESCHERICHIA coli proteins, MOLECULAR chaperones, LIPOPROTEINS, RNA polymerases, PROTEOLYSIS