Rust expression browser: an open source database for simultaneous analysis of host and pathogen gene expression profiles with expVIP

Authors: Thomas M. Adams, Tjelvar S. G. Olsson, Ricardo H. Ramírez-González, Ruth Bryant, Rosie Bryson, Pablo Eduardo Campos, Paul Fenwick, David Feuerhelm, Charlotte Hayes, Tina Henriksson, Amelia Hubbard, Radivoje Jevtić, Christopher Judge, Matthew Kerton, Jacob Lage, Clare M. Lewis, Christine Lilly, Udi Meidan, Dario Novoselović, Colin Patrick, Ruth Wanyera, Diane G. O. Saunders

Source: BMC Genomics, Vol 22, Iss 1, Pp 1-10 (2021)

Subject Terms: RNA-Seq, expVIP, Gene expression browser, Wheat yellow rust, Puccinia striiformis f. sp. tritici, Transcriptomics, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/f1c246df504f44cc9b988ee9d7198c11

Impact of transposable elements on genome structure and evolution in bread wheat

Authors: Thomas Wicker, Heidrun Gundlach, Manuel Spannagl, Cristobal Uauy, Philippa Borrill, Ricardo H. Ramírez-González, Romain De Oliveira, International Wheat Genome Sequencing Consortium, Klaus F. X. Mayer, Etienne Paux, Frédéric Choulet

Source: Genome Biology, Vol 19, Iss 1, Pp 1-18 (2018)

Subject Terms: Transposable elements, Wheat genome, Genome evolution, LTR retrotransposons, Polyploidy, Triticum aestivum, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13059-018-1479-0; https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/1b2faa0f3eea48748637fa630f4b46c6

Genome-Wide Transcription During Early Wheat Meiosis Is Independent of Synapsis, Ploidy Level, and the Ph1 Locus

Authors: Azahara Carmen Martín, Philippa Borrill, Janet Higgins, Abdulkader Alabdullah, Ricardo H. Ramírez-González, David Swarbreck, Cristobal Uauy, Peter Shaw, Graham Moore

Source: Frontiers in Plant Science, Vol 9 (2018)

Subject Terms: polyploidy, whole-genome duplication, wheat–rye hybrid, triticale, RNA-seq analysis, ZIP4, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fpls.2018.01791/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/3201a18cf2ee45d6979ec58267edb162

A haplotype-led approach to increase the precision of wheat breeding

Authors: Jemima Brinton, Ricardo H. Ramirez-Gonzalez, James Simmonds, Luzie Wingen, Simon Orford, Simon Griffiths, Wheat Genome Project, Georg Haberer, Manuel Spannagl, Sean Walkowiak, Curtis Pozniak, Cristobal Uauy

Source: Communications Biology, Vol 3, Iss 1, Pp 1-11 (2020)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/616bdb9138f44300a374cdd45d90d5e6

A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization

Authors: Abdul Kader Alabdullah, Philippa Borrill, Azahara C. Martin, Ricardo H. Ramirez-Gonzalez, Keywan Hassani-Pak, Cristobal Uauy, Peter Shaw, Graham Moore

Source: Frontiers in Plant Science, Vol 10 (2019)

Subject Terms: wheat, meiosis, hexaploid, polyploidization, co-expression, network, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fpls.2019.01325/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/aa0af07683ec43b286452ca9c32920e7

StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics [v2; ref status: indexed, http://f1000r.es/2x1]

Authors: Ricardo H. Ramirez-Gonzalez, Richard M. Leggett, Darren Waite, Anil Thanki, Nizar Drou, Mario Caccamo, Robert Davey

Source: F1000Research, Vol 2 (2014)

Subject Terms: Bioinformatics, Medicine, Science

File Description: electronic resource

Relation: http://f1000research.com/articles/2-248/v2; https://doaj.org/toc/2046-1402

Access URL: https://doaj.org/article/d3d202050e424bda830d39aaab64c51d

StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics [v1; ref status: indexed, http://f1000r.es/28e]

Authors: Ricardo H. Ramirez-Gonzalez, Richard M. Leggett, Darren Waite, Anil Thanki, Nizar Drou, Mario Caccamo, Robert Davey

Source: F1000Research, Vol 2 (2013)

Subject Terms: Bioinformatics, Medicine, Science

File Description: electronic resource

Relation: http://f1000research.com/articles/2-248/v1; https://doaj.org/toc/2046-1402

Access URL: https://doaj.org/article/aad5403074d847c48a842c74e5622dda