SeqRisk: Transformer-augmented latent variable model for improved survival prediction with longitudinal data

Authors: Öğretir, Mine, Koskinen, Miika, Sinisalo, Juha, Renkonen, Risto, Lähdesmäki, Harri

Subject Terms: Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2409.12709

Plasma proteome of brain-dead organ donors predicts heart transplant outcome

Authors: Lukac, Jan, Dhaygude, Kishor, Saraswat, Mayank, Joenväärä, Sakari, Syrjälä, Simo O, Holmström, Emil J, Krebs, Rainer, Renkonen, Risto, Nykänen, Antti I, Lemström, Karl B

Source: Journal of heart and lung transplantation. 41(3):311-324

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100155660401.0x000001&indx=1&recIds=ETOCvdc_100155660401.0x000001

Survival and data-driven phenotypes in head and neck cancer.

Authors: Heinolainen, Anni, Nguyen, Bruce, Silén, Suvi, Renkonen, Risto, Koskinen, Miika

Source: Scientific Reports; 2/18/2025, Vol. 15 Issue 1, p1-11, 11p

Subject Terms: HEAD & neck cancer, MEDICAL sciences, ELECTRONIC health records, OVERALL survival, SLEEP apnea syndromes, SURVIVAL analysis (Biometry)

Orexin-A measurement in narcolepsy: A stability study and a comparison of LC-MS/MS and immunoassays

Authors: Lindström, Mikael, Schinkelshoek, Mink, Tienari, Pentti J., Kukkonen, Jyrki P., Renkonen, Risto, Fronczek, Rolf, Lammers, Gert Jan, Itkonen, Outi

Source: In Clinical Biochemistry April 2021 90:34-39

Plasma bradykinin concentrations during septic shock determined by a novel LC-MS/MS assay

Authors: Lindström, Mikael, Valkonen, Miia, Tohmola, Niina, Renkonen, Risto, Strandin, Tomas, Vaheri, Antti, Itkonen, Outi

Source: In Clinica Chimica Acta June 2019 493:20-24

Hierarchical clustering in evaluating inflammatory upper airway phenotypes; increased symptoms in adults with allergic multimorbidity

Authors: Hanif, Tanzeela, Laulajainen-Hongisto, Anu, Luukkainen, Annika, Numminen, Jura, Kääriäinen, Janne, Myller, Jyri, Kalogjera, Livije, Huhtala, Heini, Kankainen, Matti, Renkonen, Risto

Source: Asian Pacific journal of allergy and immunology. 38(4):239-250

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN628445370&indx=1&recIds=ETOCRN628445370

Preoperative Radiotherapy Leads to Significant Differences in the Plasma Protein Profile of Rectal Cancer Patients

Authors: Holm, Matilda, Joenväärä, Sakari, Saraswat, Mayank, Tohmola, Tiialotta, Ristimäki, Ari, Renkonen, Risto, Haglund, Caj

Source: Oncology. 98(7):493-500

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100108492197.0x000001&indx=1&recIds=ETOCvdc_100108492197.0x000001

Plasma protein expression differs between colorectal cancer patients depending on primary tumor location

Authors: Holm, Matilda, Joenväärä, Sakari, Saraswat, Mayank, Tohmola, Tiialotta, Ristimäki, Ari, Renkonen, Risto, Haglund, Caj

Source: Cancer medicine. 9(14):5221-5234

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100108400473.0x000001&indx=1&recIds=ETOCvdc_100108400473.0x000001

Comparison of serum serotonin and serum 5-HIAA LC-MS/MS assays in the diagnosis of serotonin producing neuroendocrine neoplasms: A pilot study

Authors: Lindström, Mikael, Tohmola, Niina, Renkonen, Risto, Hämäläinen, Esa, Schalin-Jäntti, Camilla, Itkonen, Outi

Source: In Clinica Chimica Acta July 2018 482:78-83

Identification of several plasma proteins whose levels in colorectal cancer patients differ depending on outcome

Authors: Holm, Matilda, Joenväärä, Sakari, Saraswat, Mayank, Mustonen, Harri, Tohmola, Tiialotta, Ristimäki, Ari, Renkonen, Risto, Haglund, Caj

Source: FASEB bioAdvances. 1(12):723-730

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100094317133.0x000001&indx=1&recIds=ETOCvdc_100094317133.0x000001

Differences and overlap in plasma protein expression during colorectal cancer progression

Authors: Holm, Matilda, Joenväärä, Sakari, Saraswat, Mayank, Tohmola, Tiialotta, Ristimäki, Ari, Renkonen, Risto, Haglund, Caj

Source: Translational medicine communications. 4(1):1-12

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100191716949.0x000001&indx=1&recIds=ETOCvdc_100191716949.0x000001

Label-free serum proteomics and multivariate data analysis identifies biomarkers and expression trends that differentiate Intraductal papillary mucinous neoplasia from pancreatic adenocarcinoma and healthy controls

Authors: Saraswat, Mayank, Nieminen, Heini, Joenvaara, Sakari, Tohmola, Tiialotta, Seppänen, Hanna, Ristimäki, Ari, Haglund, Caj, Renkonen, Risto

Source: Translational medicine communications. 4(1):1-12

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100188019553.0x000001&indx=1&recIds=ETOCvdc_100188019553.0x000001

Tutkijalääkäriohjelma tarjoaa nopean alun tutkijanuralle

Authors: Vihma, Katri, Uusikangas, Silja, Bergman, Paula H., Renkonen, Risto, Sariola, Hannu, Lehtisalo, Minna, Niemi, Mikko, Rice, David P., Heikinheimo, Markku, Rahkonen, Ossi

Source: Duodecim. 135(3):275-282

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN618836563&indx=1&recIds=ETOCRN618836563

Human Spermatozoa Quantitative Proteomic Signature Classifies Normo- and Asthenozoospermia

Authors: Saraswat, Mayank ^{‡, §}, Joenväärä, Sakari ^§, Jain, Tushar ^¶, Tomar, Anil Kumar ^‖, Sinha, Ashima ^‖, Singh, Sarman ^**, Yadav, Savita ^‖, Renkonen, Risto ^{‡, §, ‡‡}

Source: In Molecular & Cellular Proteomics January 2017 16(1):57-72

Comorbidities associated with adult asthma: a population-based matched cohort study in Finland.

Authors: Lemmetyinen, Riikka Emilia, Toppila-Salmi, Sanna Katriina, But, Anna, Renkonen, Risto, Pekkanen, Juha, Haukka, Jari, Karjalainen, Jussi

Source: BMJ Open Respiratory Research; 2024, Vol. 11 Issue 1, p1-9, 9p

Preanalytical validation and reference values for a mass spectrometric assay of serum vanillylmandelic acid for screening of catecholamine secreting neuroendocrine tumors

Authors: Tohmola, Niina, Itkonen, Outi, Turpeinen, Ursula, Joenväärä, Sakari, Renkonen, Risto, Hämäläinen, Esa

Source: In Clinica Chimica Acta 15 June 2015 446:206-212

Abstracts from the 11th Symposium on Experimental Rhinology and Immunology of the Nose (SERIN 2017)

Authors: Gracia, Ibon, Rondón, Carmen, Campo, Paloma, Prieto, Ana, Mayorga, Lina, Galindo, Luisa, Molina, Ana, Blanca, Miguel, Torres, Maria, Morikawa, Taiyo, Fukuoka, Ayumi, Matsushita, Kazufumi, Fujieda, Shigeharu, Yoshimoto, Tomohiro, Iwasaki, Naruhito, Smulders, Tamar, Egmond, Danielle, Drunen, Kees, Schee, Marc, Beule, Achim, Berings, Margot, Jult, Anton, Vermeulen, Hanne, Ruyck, Natalie, Derycke, Lara, Ucar, Hakan, Ghekiere, Philip, Temmerman, Robin, Ellis, John, Bachert, Claus, Lambrecht, Bart, Dullaers, Melissa, Gevaert, Philippe, Arasi, Stefania, Perna, Serena, Resch, Yvonne, Lupinek, Christian, Chen, Kuan-Wei, Vrtala, Susanne, Valenta, Rudolf, Matricardi, Paolo, Gonçalves, Ivânia, Jacinto, Tiago, Amaral, Rita, Pereira, Ana, Araújo, Luís, Couto, Mariana, Fonseca, João, Stjarne, Par, Kaulsay, Ranbir, Pohl, Wolfgang, Plaza, Maria, Mayorga, Cristobalina, Herknerova, Magdalena, Wang, Tengchin, Wu, Chiejun, Kilimajer, Jonathan, Pujols, Laura, Roca-Ferrer, Jordi, Callejas, Borja, Fuentes-Prado, Mireya, Perez-Gonzalez, Maria, Alobid, Isam, Valero, Antonio, Picado, Cesar, Murray, Ruth, Mullol, Joaquim, Steelant, Brecht, Martens, Katleen, Boeckxstaens, Guy, Seys, Sven, Hellings, Peter, Biggs, Timothy, Hayes, Stephen, Harries, Philip, Pender, Sylvia, Salib, Rami, Kim, Jean, Lee, Hyun, Kalogjera, Livije, Vrkic, Nada, Topic, Anita, Tomljenovic, Dejan, Greguric, Tomislav, Radovanovic, Patricija, Jund, Rainer, Haimerl, Pascal, Chaker, Adam, Schober, Yvonne, Schindela, Sonja, Nockher, Andreas, Schmidt-Weber, Carsten, Bieren, Julia, Ickrath, Pascal, Kleinsasser, Norbert, Beyersdorf, Niklas, Ding, Xin, Hagen, Rudolf, Hackenberg, Stephan, Cangiano, Daniela, Cinetto, Francesco, Brescia, Giuseppe, Marioni, Gino, Zanotti, Claudia, Schiavon, Franco, Padoan, Roberto, Caputo, Ilaria, Neri, Raffaella, Agostini, Carlo, Kim, Ji, Jang, Yong, Lim, Ji, Kim, Sung, Savlevich, Elena, Gaganov, Leonid, Kochnova, Maria, Egorov, Victor, Fok, Jie, Hanif, Tanzeela, Renkonen, Jutta, Joenväärä, Sakari, Kankainen, Matti, Mäkelä, Mika, Kauppi, Paula, Pelkonen, Anna, Mattila, Pirkko, Renkonen, Risto, Toppila-Salmi, Sanna, Holtappels, Gabriele, Blanca-López, Natalia, Gonzalez-Visiedo, Miguel, Jurado, Raquel, Canto, Gabriela

Source: Clinical and translational allergy. 7(3):1-13

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100140497975.0x000001&indx=1&recIds=ETOCvdc_100140497975.0x000001

Self-Reported Allergic Rhinitis and/or Allergic Conjunctivitis Associate with IL13 rs20541 Polymorphism in Finnish Adult Asthma Patients

Authors: Ådjers, Kati, Luukkainen, Annika, Pekkanen, Juha, Hurme, Mikko, Huhtala, Heini, Renkonen, Risto, Wang, De Yun, Mäkelä, Mika J., Karjalainen, Jussi, Toppila-Salmi, Sanna

Source: International archives of allergy and immunology. 172(2):123-128

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100085417255.0x000001&indx=1&recIds=ETOCvdc_100085417255.0x000001

N-linked (N-) Glycoproteomics of Urimary Exosomes*

Authors: Saraswat, Mayank ^{‡, ‡‡}, Joenväära, Sakari ^{§, ‡‡}, Musante, Luca ^¶, Peltoniemi, Hannu ^‖, Holthofer, Harry ^¶, Renkonen, Risto ^{‡, §, **}

Source: In Molecular & Cellular Proteomics February 2015 14(2):263-276

Kansallinen sisäilma ja terveys -ohjelma 2018—2028 tukee terveydenhuoltoa

Authors: Haahtela, Tari, Renkonen, Risto

Source: Duodecim. 135(8):704-706

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN619633013&indx=1&recIds=ETOCRN619633013