Genome Sequence of Theileria parva, a Bovine Pathogen That Transforms Lymphocytes

Authors: Gardner, Malcolm J., Bishop, Richard, Shah, Trushar, de Villiers, Etienne P., Carlton, Jane M., Hall, Neil, Ren, Qinghu, Paulsen, Ian T., Pain, Arnab, Berriman, Matthew, Sato, Shigeharu, Ralph, Stuart A., Mann, David J., Xiong, Zikai, Shallom, Shamira J., Weidman, Janice, Jiang, Lingxia, Lynn, Jeffery, Weaver, Bruce, Shoaibi, Azadeh, Domingo, Alexander R., Wasawo, Delia, Crabtree, Jonathan, Wortman, Jennifer R., Haas, Brian, Angiuoli, Samuel V., Creasy, Todd H., Lu, Charles, Suh, Bernard, Silva, Joana C., Utterback, Teresa R., Feldblyum, Tamara V., Pertea, Mihaela, Allen, Jonathan, Nierman, William C., Salzberg, Steven L., White, Owen R., Fitzhugh, Henry A., Morzaria, Subhash, Venter, J. Craig, Fraser, Claire M., Nene, Vishvanath

Source: Science, 2005 Jul 01. 309(5731), 134-137.

Access URL: https://www.jstor.org/stable/3842184

Comparison of the Genome of the Oral Pathogen Treponema denticola with Other Spirochete Genomes

Authors: Seshadri, Rekha, Tettelin, Hervé, Eisen, Jonathan A., Heidelberg, John F., Dodson, Robert J., Davidsen, Tanja M., DeBoy, Robert T., Fouts, Derrick E., Haft, Dan H., Selengut, Jeremy, Ren, Qinghu, Brinkac, Lauren M., Madupu, Ramana, Kolonay, Jamie, Durkin, Scott A., Daugherty, Sean C., Shetty, Jyoti, Shvartsbeyn, Alla, Gebregeorgis, Elizabeth, Geer, Keita, Tsegaye, Getahun, Malek, Joel, Ayodeji, Bola, Shatsman, Sofiya, McLeod, Michael P., Šmajs, David, Howell, Jerrilyn K., Pal, Sangita, Amin, Anita, Vashisth, Pankaj, McNeill, Thomas Z., Xiang, Qin, Sodergren, Erica, Baca, Ernesto, Weinstock, George M., Norris, Steven J., Fraser, Claire M., Paulsen, Ian T., Haselkorn, Robert

Source: Proceedings of the National Academy of Sciences of the United States of America, 2004 Apr . 101(15), 5646-5651.

Access URL: https://www.jstor.org/stable/3371674

Microbial Solute Transporters

Authors: Cameron Alexander D., Elbourne Liam D.H., Hassan Karl A., Henderson Peter J.F., Paulsen Ian T., Ren Qinghu

Source: Encyclopedia of Microbiology.

Availability: https://search.credoreference.com/content/entry/estmicrobio/microbial_solute_transporters/0

Genomic Biomarkers for the Prediction of Stage and Prognosis of Upper Tract Urothelial Carcinoma

Authors: Iyer, Gopa, Rosenberg, Jonathan E., Bajorin, Dean F., Scott, Sasinya N., Shah, Ronak, Desai, Neil B., Lee, Byron, Ren, Qinghu, Reuter, Victor E., Dalbagni, Guido, Berger, Michael F., Bagrodia, Aditya, Cha, Eugene K., Sfakianos, John P., Zabor, Emily C., Bochner, Bernard H., Al-Ahmadie, Hikmat A., Solit, David B., Coleman, Jonathan A.

Source: In The Journal of Urology June 2016 195(6):1684-1689

Gleason 6 Prostate Tumors Diagnosed in the PSA Era Do Not Demonstrate the Capacity for Metastatic Spread at the Time of Radical Prostatectomy

Authors: Donin, Nicholas M., Laze, Juliana, Zhou, Ming, Ren, Qinghu, Lepor, Herbert

Source: In Urology July 2013 82(1):148-153

The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions

Authors: Merchant, Sabeeha S., Prochnik, Simon E., Vallon, Olivier, Harris, Elizabeth H., Karpowicz, Steven J., Witman, George B., Terry, Astrid, Salamov, Asaf, Fritz-Laylin, Lillian K., Maréchal-Drouard, Laurence, Marshall, Wallace F., Qu, Liang-Hu, Nelson, David R., Sanderfoot, Anton A., Spalding, Martin H., Kapitonov, Vladimir V., Ren, Qinghu, Ferris, Patrick, Lindquist, Erika, Shapiro, Harris, Lucas, Susan M., Grimwood, Jane, Schmutz, Jeremy, Grigoriev, Igor V., Rokhsar, Daniel S., Grossman, Arthur R.

Source: Science, 2007 Oct 01. 318(5848), 245-251.

Access URL: https://www.jstor.org/stable/20048584

Draft Genome of the Filarial Nematode Parasite Brugia malayi

Authors: Ghedin, Elodie, Wang, Shiliang, Spiro, David, Caler, Elisabet, Zhao, Qi, Crabtree, Jonathan, Allen, Jonathan E., Delcher, Arthur L., Guiliano, David B., Miranda-Saavedra, Diego, Angiuoli, Samuel V., Creasy, Todd, Amedeo, Paolo, Haas, Brian, El-Sayed, Najib M., Wortman, Jennifer R., Feldblyum, Tamara, Tallon, Luke, Schatz, Michael, Shumway, Martin, Koo, Hean, Salzberg, Steven L., Schobel, Seth, Pertea, Mihaela, Pop, Mihai, White, Owen, Barton, Geoffrey J., Carlow, Clotilde K. S., Crawford, Michael J., Daub, Jennifer, Dimmic, Matthew W., Estes, Chris F., Foster, Jeremy M., Ganatra, Mehul, Gregory, William F., Johnson, Nicholas M., Jin, Jinming, Komuniecki, Richard, Korf, Ian, Kumar, Sanjay, Laney, Sandra, Li, Ben-Wen, Li, Wen, Lindblom, Tim H., Lustigman, Sara, Ma, Dong, Maina, Claude V., Martin, David M. A., McCarter, James P., McReynolds, Larry, Mitreva, Makedonka, Nutman, Thomas B., Parkinson, John, Peregrín-Alvarez, José M., Poole, Catherine, Ren, Qinghu, Saunders, Lori, Sluder, Ann E., Smith, Katherine, Stanke, Mario, Unnasch, Thomas R., Ware, Jenna, Wei, Aguan D., Weil, Gary, Williams, Deryck J., Zhang, Yinhua, Williams, Steven A., Fraser-Liggett, Claire, Slatko, Barton, Blaxter, Mark L., Scott, Alan L.

Source: Science, 2007 Sep . 317(5845), 1756-1760.

Access URL: https://www.jstor.org/stable/20048433

The Tiny Eukaryote Ostreococcus Provides Genomic Insights into the Paradox of Plankton Speciation

Authors: Palenik, Brian, Grimwood, Jane, Aerts, Andrea, Rouzé, Pierre, Salamov, Asaf, Putnam, Nicholas, Dupont, Chris, Jorgensen, Richard, Derelle, Evelyne, Rombauts, Stephane, Zhou, Kemin, Otillar, Robert, Merchant, Sabeeha S., Podell, Sheila, Gaasterland, Terry, Napoli, Carolyn, Gendler, Karla, Manuell, Andrea, Tai, Vera, Vallon, Olivier, Piganeau, Gwenael, Jancek, Séverine, Heijde, Marc, Jabbari, Kamel, Bowler, Chris, Lohr, Martin, Robbens, Steven, Werner, Gregory, Dubchak, Inna, Pazour, Gregory J., Ren, Qinghu, Paulsen, Ian, Delwiche, Chuck, Schmutz, Jeremy, Rokhsar, Daniel, Van de Peer, Yves, Moreau, Hervé, Grigoriev, Igor V.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2007 May 01. 104(18), 7705-7710.

Access URL: https://www.jstor.org/stable/25427551

Draft Genome Sequence of the Sexually Transmitted Pathogen Trichomonas vaginalis

Authors: Carlton, Jane M., Hirt, Robert P., Silva, Joana C., Delcher, Arthur L., Schatz, Michael, Zhao, Qi, Wortman, Jennifer R., Bidwell, Shelby L., Alsmark, U. Cecilia M., Besteiro, Sébastien, Sicheritz-Ponten, Thomas, Noel, Christophe J., Dacks, Joel B., Foster, Peter G., Simillion, Cedric, Van de Peer, Yves, Miranda-Saavedra, Diego, Barton, Geoffrey J., Westrop, Gareth D., Müller, Sylke, Dessi, Daniele, Fiori, Pier Luigi, Ren, Qinghu, Paulsen, Ian, Zhang, Hanbang, Bastida-Corcuera, Felix D., Simoes-Barbosa, Augusto, Brown, Mark T., Hayes, Richard D., Mukherjee, Mandira, Okumura, Cheryl Y., Schneider, Rachel, Smith, Alias J., Vanacova, Stepanka, Villalvazo, Maria, Haas, Brian J., Pertea, Mihaela, Feldblyum, Tamara V., Utterback, Terry R., Shu, Chung-Li, Osoegawa, Kazutoyo, de Jong, Pieter J., Hrdy, Ivan, Horvathova, Lenka, Zubacova, Zuzana, Dolezal, Pavel, Malik, Shehre-Banoo, Logsdon, John M., Henze, Katrin, Gupta, Arti, Wang, Ching C., Dunne, Rebecca L., Upcroft, Jacqueline A., Upcroft, Peter, White, Owen, Salzberg, Steven L., Tang, Petrus, Chiu, Cheng-Hsun, Lee, Ying-Shiung, Embley, T. Martin, Coombs, Graham H., Mottram, Jeremy C., Tachezy, Jan, Fraser-Liggett, Claire M., Johnson, Patricia J.

Source: Science, 2007 Jan 01. 315(5809), 207-212.

Access URL: https://www.jstor.org/stable/20035198

Genome Sequence of Synechococcus CC9311: Insights into Adaptation to a Coastal Environment

Authors: Palenik, Brian, Ren, Qinghu, Dupont, Chris L., Myers, Garry S., Heidelberg, John F., Badger, Jonathan H., Madupu, Ramana, Nelson, William C., Brinkac, Lauren M., Dodson, Robert J., Durkin, A. Scott, Daugherty, Sean C., Sullivan, Stephen A., Khouri, Hoda, Mohamoud, Yasmin, Halpin, Rebecca, Paulsen, Ian T.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2006 Sep 01. 103(36), 13555-13559.

Access URL: https://www.jstor.org/stable/30050825

Single‐cell analysis of localized prostate cancer patients links high Gleason score with an immunosuppressive profile.

Authors: Adorno Febles, Victor R., Hao, Yuan, Ahsan, Aarif, Wu, Jiansheng, Qian, Yingzhi, Zhong, Hua, Loeb, Stacy, Makarov, Danil V., Lepor, Herbert, Wysock, James, Taneja, Samir S., Huang, William C., Becker, Daniel J., Balar, Arjun V., Melamed, Jonathan, Deng, Fang‐Ming, Ren, Qinghu, Kufe, Donald, Wong, Kwok‐Kin, Adeegbe, Dennis O.

Source: Prostate; Jun2023, Vol. 83 Issue 9, p840-849, 10p

The 2008 update of the Aspergillus nidulans genome annotation: A community effort

Authors: Wortman, Jennifer Russo, Gilsenan, Jane Mabey, Joardar, Vinita, Deegan, Jennifer, Clutterbuck, John, Andersen, Mikael R., Archer, David, Bencina, Mojca, Braus, Gerhard, Coutinho, Pedro, Döhren, Hans von, Doonan, John, Driessen, Arnold J.M., Durek, Pawel, Espeso, Eduardo, Fekete, Erzsébet, Flipphi, Michel, Estrada, Carlos Garcia, Geysens, Steven, Goldman, Gustavo, de Groot, Piet W.J., Hansen, Kim, Harris, Steven D., Heinekamp, Thorsten, Helmstaedt, Kerstin, Henrissat, Bernard, Hofmann, Gerald, Homan, Tim, Horio, Tetsuya, Horiuchi, Hiroyuki, James, Steve, Jones, Meriel, Karaffa, Levente, Karányi, Zsolt, Kato, Masashi, Keller, Nancy, Kelly, Diane E., Kiel, Jan A.K.W., Kim, Jung-Mi, van der Klei, Ida J., Klis, Frans M., Kovalchuk, Andriy, Kraševec, Nada, Kubicek, Christian P., Liu, Bo, MacCabe, Andrew, Meyer, Vera, Mirabito, Pete, Miskei, Márton, Mos, Magdalena, Mullins, Jonathan, Nelson, David R., Nielsen, Jens, Oakley, Berl R., Osmani, Stephen A., Pakula, Tiina, Paszewski, Andrzej, Paulsen, Ian, Pilsyk, Sebastian, Pócsi, István, Punt, Peter J., Ram, Arthur F.J., Ren, Qinghu, Robellet, Xavier, Robson, Geoff, Seiboth, Bernhard, van Solingen, Piet, Specht, Thomas, Sun, Jibin, Taheri-Talesh, Naimeh, Takeshita, Norio, Ussery, Dave, vanKuyk, Patricia A., Visser, Hans, van de Vondervoort, Peter J.I., de Vries, Ronald P., Walton, Jonathan, Xiang, Xin, Xiong, Yi, Zeng, An Ping, Brandt, Bernd W., Cornell, Michael J., van den Hondel, Cees A.M.J.J., Visser, Jacob, Oliver, Stephen G., Turner, Geoffrey

Source: In Fungal Genetics and Biology 2009 46(1) Supplement:S2-S13

Transporter Protein Families

Authors: Ren, Qinghu, Paulsen, Ian T

Source: Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. 2005, v. 6, p2399-2412.

Subject Terms: Genomes, Membrane proteins, Phylogeny, Eukaryotes, Online databases, Transport proteins, ATP

Optimal Method for Reporting Prostate Cancer Grade in MRI-targeted Biopsies.

Authors: Deng, Fang-Ming, Isaila, Bogdan, Jones, Derek, Ren, Qinghu, Kyung, Park, Hoskoppal, Deepthi, Huang, Hongying, Mirsadraei, Leili, Xia, Yuhe, Melamed, Jonathan

Source: American Journal of Surgical Pathology; Jan2022, Vol. 46 Issue 1, p44-50, 7p

CD163 versus CD68 in tumor associated macrophages of classical hodgkin lymphoma

Authors: Harris Jonathan A, Jain Salvia, Ren Qinghu, Zarineh Alirezah, Liu Cynthia, Ibrahim Sherif

Source: Diagnostic Pathology, Vol 7, Iss 1, p 12 (2012)

Subject Terms: Pathology, RB1-214

File Description: electronic resource

Relation: http://www.diagnosticpathology.org/content/7/1/12; https://doaj.org/toc/1746-1596

Access URL: https://doaj.org/article/d3251c72d8cb44edaea0244bfc659a9e

Histone H2A.Z Acetylation Modulates an Essential Charge Patch

Authors: Ren, Qinghu, Gorovsky, Martin A. ^*

Source: In Molecular Cell 2001 7(6):1329-1335

Multilocular cystic renal cell tumors with Xp11 translocation-associated renal cell carcinoma features; report of 2 cases and review of literature

Authors: Mirsadraei, Leili, Vo, Duc, Ren, Qinghu, Deng, Fang-Ming, Melamed, Jonathan

Source: In Human Pathology: Case Reports June 2021 24

Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901.

Authors: Wu, Martin¹, Ren, Qinghu¹, Durkin, A. Scott¹, Daugherty, Sean C.¹, Brinkac, Lauren M.¹, Dodson, Robert J.¹, Madupu, Ramana¹, Sullivan, Steven A.¹, Kolonay, James F.¹, Nelson, William C.¹, Tallon, Luke J.¹, Jones, Kristine M.¹, Ulrich, Luke E.², Gonzalez, Juan M.³, Zhulin, Igor B.², Robb, Frank T.³, Eisen, Jonathan A.^1,4 jeisen@tigr.org, Richardson, Paul M.⁵

Source: PLoS Genetics. Nov2005, Vol. 1 Issue 5, p563-574. 12p. 5 Diagrams, 3 Charts.

Subject Terms: *GENOMES, *NUCLEOTIDE sequence, *THERMOPHILIC bacteria, *BACTERIA, *ARCHAEBACTERIA

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Microbial Solute Transporters

Authors: Elbourne, Liam D.H., Hassan, Karl A., Ren, Qinghu, Cameron, Alexander D., Henderson, Peter J.F., Paulsen, Ian T.

Source: In Reference Module in Biomedical Research 2015