Detection of circulating tumor DNA by tumor-informed whole-genome sequencing enables prediction of recurrence in stage III colorectal cancer patients

Authors: Frydendahl, Amanda, Nors, Jesper, Rasmussen, Mads H., Henriksen, Tenna V., Nesic, Marijana, Reinert, Thomas, Afterman, Danielle, Lauterman, Tomer, Kuzman, Maja, Gonzalez, Santiago, Glavas, Dunja, Smadback, James, Maloney, Dillon, Levatic, Jurica, Yahalom, Michael, Ptashkin, Ryan, Tavassoly, Iman, Donenhirsh, Zohar, White, Eric, Kandasamy, Ravi, Alon, Ury, Nordentoft, Iver, Lindskrog, Sia V., Dyrskjøt, Lars, Jaensch, Claudia, Løve, Uffe S., Andersen, Per V., Thorlacius-Ussing, Ole, Iversen, Lene H., Gotschalck, Kåre A., Zviran, Asaf, Oklander, Boris, Andersen, Claus L.

Source: In European Journal of Cancer November 2024 211

Performance characteristics of thromboelastometry assays using incompletely filled and prolonged stored samples

Authors: Paarup, Helene M., Rasmussen, Mads H., Yazer, Mark H., Sprogøe, Ulrik

Source: Transfusion. 60:S107-S111

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100107735578.0x000001&indx=1&recIds=ETOCvdc_100107735578.0x000001

Beyond basics: Key mutation selection features for successful tumor‐informed ctDNA detection.

Authors: Nesic, Marijana, Rasmussen, Mads H., Henriksen, Tenna V., Demuth, Christina, Frydendahl, Amanda, Nordentoft, Iver, Dyrskjøt, Lars, Andersen, Claus L.

Source: International Journal of Cancer; Sep2024, Vol. 155 Issue 5, p925-933, 9p

Subject Terms: CIRCULATING tumor DNA, BLADDER cancer, GENETIC mutation, SOMATIC mutation, ERROR rates

Establishment and characterization of models of chemotherapy resistance in colorectal cancer: Towards a predictive signature of chemoresistance

Authors: Jensen, Niels F., Stenvang, Jan, Beck, Mette K., Hanáková, Barbora, Belling, Kirstine C., Do, Khoa N., Viuff, Birgitte, Nygård, Sune B., Gupta, Ramneek, Rasmussen, Mads H., Tarpgaard, Line S., Hansen, Tine P., Budinská, Eva, Pfeiffer, Per, Bosman, Fred, Tejpar, Sabine, Roth, Arnaud, Delorenzi, Mauro, Andersen, Claus L., Rømer, Maria U., Brünner, Nils, Moreira, José M.A.

Source: In Molecular Oncology June 2015 9(6):1169-1185

Putting a brake on stress signaling: miR-625-3p as a biomarker for choice of therapy in colorectal cancer

Authors: Lyskjær, Iben, Rasmussen, Mads H, Andersen, Claus L

Source: Epigenomics. 8(11):1449-1452

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100139371086.0x000001&indx=1&recIds=ETOCvdc_100139371086.0x000001

High expression of microRNA-625-3p is associated with poor response to first-line oxaliplatin based treatment of metastatic colorectal cancer

Authors: Rasmussen, Mads H., Jensen, Niels F., Tarpgaard, Line S., Qvortrup, Camilla, Rømer, Maria U., Stenvang, Jan, Hansen, Tine P., Christensen, Lise L., Lindebjerg, Jan, Hansen, Flemming, Jensen, Benny V., Hansen, Torben F., Pfeiffer, Per, Brünner, Nils, Ørntoft, Torben F., Andersen, Claus L.

Source: In Molecular Oncology June 2013 7(3):637-646

MethCORR modelling of methylomes from formalin-fixed paraffin-embedded tissue enables characterization and prognostication of colorectal cancer

Authors: Mattesen, Trine B., Rasmussen, Mads H., Sandoval, Juan, Ongen, Halit, Árnadóttir, Sigrid S., Gladov, Josephine, Martinez-Cardus, Anna, Castro de Moura, Manuel, Madsen, Anders H., Laurberg, Søren, Dermitzakis, Emmanouil T., Esteller, Manel, Andersen, Claus L., Bramsen, Jesper B.

Source: Nature communications. 11(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174611653.0x000001&indx=1&recIds=ETOCvdc_100174611653.0x000001

Publisher Correction: MethCORR modelling of methylomes from formalin-fixed paraffin-embedded tissue enables characterization and prognostication of colorectal cancer

Authors: Mattesen, Trine B., Rasmussen, Mads H., Sandoval, Juan, Ongen, Halit, Árnadóttir, Sigrid S., Gladov, Josephine, Martinez-Cardus, Anna, de Moura, Manuel Castro, Madsen, Anders H., Laurberg, Søren, Dermitzakis, Emmanouil T., Esteller, Manel, Andersen, Claus L., Bramsen, Jesper B.

Source: Nature communications. 11(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174600138.0x000001&indx=1&recIds=ETOCvdc_100174600138.0x000001

Alternative Splicing of SLC39A14 in Colorectal Cancer is Regulated by the Wnt Pathway

Authors: Thorsen, Kasper ^‡, Mansilla, Francisco ^‡, Schepeler, Troels ^‡, Øster, Bodil ^‡, Rasmussen, Mads H. ^‡, Dyrskjøt, Lars ^‡, Karni, Rotem ^§, Akerman, Martin ^¶, Krainer, Adrian R. ^¶, Laurberg, Søren ^‖, Andersen, Claus L. ^‡, Ørntoft, Torben F. ^{‖, **}

Source: In Molecular & Cellular Proteomics January 2011 10(1)

DREAMS: deep read-level error model for sequencing data applied to low-frequency variant calling and circulating tumor DNA detection.

Authors: Christensen, Mikkel H., Drue, Simon O., Rasmussen, Mads H., Frydendahl, Amanda, Lyskjær, Iben, Demuth, Christina, Nors, Jesper, Gotschalck, Kåre A., Iversen, Lene H., Andersen, Claus L., Pedersen, Jakob Skou

Source: Genome Biology; 4/30/2023, Vol. 24 Issue 1, p1-25, 25p

Error Characterization and Statistical Modeling Improves Circulating Tumor DNA Detection by Droplet Digital PCR.

Authors: Henriksen, Tenna V., Drue, Simon O., Frydendahl, Amanda, Demuth, Christina, Rasmussen, Mads H., Reinert, Thomas, Pedersen, Jakob S., Andersen, Claus L.

Source: Clinical Chemistry; May2022, Vol. 68 Issue 5, p657-667, 11p

Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis

Authors: Laurila Kirsti, Mansilla Francisco, Eller Asger, Pedersen Jakob, Lamy Philippe, Hansen Kristian Q, Wang Kai, Vang Søren, Rasmussen Mads H, Øster Bodil, Schepeler Troels, Thorsen Kasper, Wiuf Carsten, Laurberg Søren, Dyrskjøt Lars, Ørntoft Torben F, Andersen Claus L

Source: BMC Genomics, Vol 12, Iss 1, p 505 (2011)

Subject Terms: Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/12/505; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/b06ffd3760064e718d4cabbb00ff11b6

Evaluation of two commercial global miRNA expression profiling platforms for detection of less abundant miRNAs

Authors: Ørntoft Torben F, Dyrskjøt Lars, Ostenfeld Marie S, Rasmussen Mads H, Lamy Philippe, Jensen Steffen G, Andersen Claus L

Source: BMC Genomics, Vol 12, Iss 1, p 435 (2011)

Subject Terms: Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/12/435; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/c13238609de54c6ca83a9674e5cf323c

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Putative cis-regulatory drivers in colorectal cancer.

Authors: Ongen, Halit, Andersen, Claus L., Bramsen, Jesper B., Oster, Bodil, Rasmussen, Mads H., Ferreira, Pedro G., Sandoval, Juan, Vidal, Enrique, Whiffin, Nicola, Planchon, Alexandra, Padioleau, Ismael, Bielser, Deborah, Romano, Luciana, Tomlinson, Ian, Houlston, Richard S., Esteller, Manel, Orntoft, Torben F., Dermitzakis, Emmanouil T.

Source: Nature. 8/6/2014, Vol. 512 Issue 7512, p87-90. 4p.

Subjects: COLON cancer, COLON cancer patients, GENETIC code, NEOPLASTIC cell transformation, GENOMES, EPISTASIS (Genetics)

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