glmmPen: High Dimensional Penalized Generalized Linear Mixed Models

Authors: Heiling, Hillary M., Rashid, Naim U., Li, Quefeng, Ibrahim, Joseph G.

Subject Terms: Statistics - Computation, Statistics - Methodology

Access URL: http://arxiv.org/abs/2305.08204

Efficient Computation of High-Dimensional Penalized Generalized Linear Mixed Models by Latent Factor Modeling of the Random Effects

Authors: Heiling, Hillary M., Rashid, Naim U., Li, Quefeng, Peng, Xianlu L., Yeh, Jen Jen, Ibrahim, Joseph G.

Subject Terms: Statistics - Methodology, Statistics - Computation

Access URL: http://arxiv.org/abs/2305.08201

Deeply-Learned Generalized Linear Models with Missing Data

Authors: Lim, David K, Rashid, Naim U, Oliva, Junier B, Ibrahim, Joseph G

Source: Journal of Computational and Graphical Statistics, 2023

Subject Terms: Statistics - Machine Learning, Computer Science - Machine Learning, Statistics - Computation, Statistics - Methodology

Access URL: http://arxiv.org/abs/2207.08911

Resource recovery through bioremediation of fuel-synthesis wastewater in a biofilm photobioreactor using purple non-sulfur bacteria: A circular bioeconomy approach

Authors: Shaikh, Sultan, Rashid, Naim, McKay, Gordon, Mackey, Hamish Robert

Source: In Chemical Engineering Journal Advances 15 August 2024 19

Effect of hydrothermal pretreatment on leachate fed Scenedesmus sp. biomass solubilization and biogas production

Authors: Saleem, Sahar, Ullah, Zia, Rashid, Naim, Sheikh, Zeshan

Source: In Journal of Environmental Management August 2024 365

Unsupervised Imputation of Non-ignorably Missing Data Using Importance-Weighted Autoencoders

Authors: Lim, David K., Rashid, Naim U., Oliva, Junier B., Ibrahim, Joseph G.

Subject Terms: Computer Science - Machine Learning, Statistics - Applications

Access URL: http://arxiv.org/abs/2101.07357

Estimating cell type composition using isoform expression one gene at a time

Authors: Heiling, Hillary M., Wilson, Douglas R., Rashid, Naim U., Sun, Wei, Ibrahim, Joseph G.

Source: Biometrics. 79(2):854-865

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100185731929.0x000001&indx=1&recIds=ETOCvdc_100185731929.0x000001

Green synthesis of biodiesel from microalgae cultivated in industrial wastewater via microbubble induced esterification using bio-MOF-based heterogeneous catalyst

Authors: Javed, Fahed, Zimmerman, William B., Fazal, Tahir, Hafeez, Ainy, Mustafa, Maria, Rashid, Naim, Rehman, Fahad

Source: Chemical engineering research & design. 189:707-720

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100178310106.0x000001&indx=1&recIds=ETOCvdc_100178310106.0x000001

High dimensional precision medicine from patient-derived xenografts

Authors: Rashid, Naim U., Luckett, Daniel J., Chen, Jingxiang, Lawson, Michael T., Wang, Longshaokan, Zhang, Yunshu, Laber, Eric B., Liu, Yufeng, Yeh, Jen Jen, Zeng, Donglin, Kosorok, Michael R.

Subject Terms: Statistics - Machine Learning, Computer Science - Machine Learning, Quantitative Biology - Genomics, Statistics - Applications, Statistics - Methodology

Access URL: http://arxiv.org/abs/1912.06667

Deeply Learned Generalized Linear Models with Missing Data.

Authors: Lim, David K.¹, david.lim@alumni.unc.edu, Rashid, Naim U.¹, Oliva, Junier B.², Ibrahim, Joseph G.¹

Source: Journal of Computational & Graphical Statistics; Apr-Jun2024, Vol. 33 Issue 2, p638-650, 13p

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A review of waste management approaches to maximise sustainable value of waste from the oil and gas industry and potential for the State of Qatar

Authors: Shahbaz, Muhammad, Rashid, Naim, Saleem, Junaid, Mackey, Hamish, McKay, Gordon, Al-Ansari, Tareq ^⁎

Source: In Fuel 15 January 2023 332 Part 2

Efficient computation of high-dimensional penalized generalized linear mixed models by latent factor modeling of the random effects.

Authors: Heiling, Hillary M.¹ (AUTHOR) hmheiling@gmail.com, Rashid, Naim U.¹ (AUTHOR), Quefeng Li¹ (AUTHOR), Xianlu L. Peng² (AUTHOR), Yeh, Jen Jen^2,3,4 (AUTHOR), Ibrahim, Joseph G.¹ (AUTHOR)

Source: Biometrics. Mar2024, Vol. 80 Issue 1, p1-8. 8p. 3 Charts.

Real textile industrial wastewater treatment and biodiesel production using microalgae

Authors: Javed, Fahed, Rehman, Fahad, Khan, Asad Ullah, Fazal, Tahir, Hafeez, Ainy, Rashid, Naim

Source: In Biomass and Bioenergy October 2022 165

Efficient detection and classification of epigenomic changes under multiple conditions

Authors: Baldoni, Pedro L., Rashid, Naim U., Ibrahim, Joseph G.

Source: Biometrics. 78(3):1141-1154

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100175495672.0x000001&indx=1&recIds=ETOCvdc_100175495672.0x000001

Efficient Computation of High‐Dimensional Penalized Piecewise Constant Hazard Random Effects Models.

Authors: Heiling, Hillary M.¹ (AUTHOR) hillary_heiling@dfci.harvard.edu, Rashid, Naim U.^1,2 (AUTHOR), Li, Quefeng¹ (AUTHOR), Peng, Xianlu L.² (AUTHOR), Yeh, Jen Jen^2,3,4 (AUTHOR), Ibrahim, Joseph G.¹ (AUTHOR)

Source: Statistics in Medicine. 3/15/2025, Vol. 44 Issue 6, p1-13. 13p.

Prognostic and molecular multi-platform analysis of CALGB 40603 (Alliance) and public triple-negative breast cancer datasets.

Authors: Felsheim, Brooke M., Fernandez-Martinez, Aranzazu, Fan, Cheng, Pfefferle, Adam D., Hayward, Michele C., Hoadley, Katherine A., Rashid, Naim U., Tolaney, Sara M., Somlo, George, Carey, Lisa A., Sikov, William M., Perou, Charles M.

Source: NPJ Breast Cancer; 3/8/2025, Vol. 11 Issue 1, p1-14, 14p

Modeling Between-Study Heterogeneity for Improved Reproducibility in Gene Signature Selection and Clinical Prediction

Authors: Rashid, Naim U., Li, Quefeng, Yeh, Jen Jen, Ibrahim, Joseph G.

Subject Terms: Statistics - Methodology, Statistics - Applications

Access URL: http://arxiv.org/abs/1708.05508

MODEL-BASED FEATURE SELECTION AND CLUSTERING OF RNA-SEQ DATA FOR UNSUPERVISED SUBTYPE DISCOVERY

Authors: Lim, David K., Rashid, Naim U., Ibrahim, Joseph G.

Source: The Annals of Applied Statistics, 2021 Mar 01. 15(1), 481-508.

Access URL: https://www.jstor.org/stable/27210055

The KRAS-regulated kinome identifies WEE1 and ERK coinhibition as a potential therapeutic strategy in KRAS-mutant pancreatic cancer

Authors: Diehl, J. Nathaniel, Klomp, Jennifer E., Snare, Kayla R., Hibshman, Priya S., Blake, Devon R., Kaiser, Zane D., Gilbert, Thomas S.K., Baldelli, Elisa, Pierobon, Mariaelena, Papke, Björn, Yang, Runying, Hodge, Richard G., Rashid, Naim U., Petricoin, Emanuel F., III, Herring, Laura E., Graves, Lee M., Cox, Adrienne D., Der, Channing J.

Source: In Journal of Biological Chemistry November 2021 297(5)