Suitability of large language models for extraction of high-quality chemical reaction dataset from patent literature

Authors: Sarveswara Rao Vangala, Sowmya Ramaswamy Krishnan, Navneet Bung, Dhandapani Nandagopal, Gomathi Ramasamy, Satyam Kumar, Sridharan Sankaran, Rajgopal Srinivasan, Arijit Roy

Source: Journal of Cheminformatics, Vol 16, Iss 1, Pp 1-13 (2024)

Subject Terms: Large language models, Reaction mining, Patents, Chemical reactions, Dataset construct, Information technology, T58.5-58.64, Chemistry, QD1-999

File Description: electronic resource

Relation: https://doaj.org/toc/1758-2946

Access URL: https://doaj.org/article/c9e88226009a45499129c6be0dbaf310

Brain metastases and mortality in patients with ALK + metastatic non-small cell lung cancer treated with second-generation ALK tyrosine kinase inhibitors as first-line targeted therapies: An observational cohort study

Authors: Uprety, Dipesh ^a, Abrahami, Devin ^{b, ⁎}, Marcum, Zachary A. ^c, Li, Benjamin ^b, Sang, Angela ^b, Davis, Matthew ^c, Rifi, Nada ^b, Kelton, John M. ^b, Ramaswamy, Krishnan ^b, Sanghvi, Parag ^d, Bazhenova, Lyudmila ^d

Source: In Lung Cancer March 2025 201

Elucidating the interaction between stretch and stiffness using an agent-based spring network model of progressive pulmonary fibrosis

Authors: Joseph K. Hall, Jason H. T. Bates, Ramaswamy Krishnan, Jae Hun Kim, Yuqing Deng, Kenneth R. Lutchen, Béla Suki

Source: Frontiers in Network Physiology, Vol 4 (2024)

Subject Terms: mechanotransduction, mechanosensitive, extracellar matrix, fibroblasts, network effects, bifurcation (mathematics), Electronic computers. Computer science, QA75.5-76.95

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fnetp.2024.1396383/full; https://doaj.org/toc/2674-0109

Access URL: https://doaj.org/article/5a7ea2c08d6141a38ded25963b87700d

Survival and Economic Impact of Rapid Prostate-Specific Antigen Doubling Time in Patients With Nonmetastatic Castration-Resistant Prostate Cancer

Authors: Freedland, Stephen J., Ramaswamy, Krishnan, Huang, Ahong, Sandin, Rickard, Mardekian, Jack, Schultz, Neil M., Janjan, Nora, George, Daniel J.

Source: In Clinical Genitourinary Cancer August 2023 21(4):419-429

R-SIM: A Database of Binding Affinities for RNA-small Molecule Interactions

Authors: Ramaswamy Krishnan, Sowmya, Roy, Arijit, Michael Gromiha, M.

Source: In Journal of Molecular Biology 15 July 2023 435(14)

The Fibrotic Phenotype of Human Precision-Cut Lung Slices Is Maintained after Cryopreservation

Authors: Méry Marimoutou, Vivek Patel, Jae Hun Kim, Niccole Schaible, Jose Alvarez, Joseph Hughes, McKenzie Obermok, Carlos Iván Rodríguez, Thomas Kallarakal, Béla Suki, Khalid Amin, Ramaswamy Krishnan, Holger Peter Behrsing

Source: Toxics, Vol 12, Iss 9, p 637 (2024)

Subject Terms: fibrosis, cryopreservation, PCLS, IPF, human, stiffness, Chemical technology, TP1-1185

File Description: electronic resource

Relation: https://www.mdpi.com/2305-6304/12/9/637; https://doaj.org/toc/2305-6304

Access URL: https://doaj.org/article/b53e0cdbd46b4b568dee45843db8709d

Antagonizing cholecystokinin A receptor in the lung attenuates obesity-induced airway hyperresponsiveness

Authors: Ronald Allan M. Panganiban, Zhiping Yang, Maoyun Sun, Chan Young Park, David I. Kasahara, Niccole Schaible, Ramaswamy Krishnan, Alvin T. Kho, Elliot Israel, Marc B. Hershenson, Scott T. Weiss, Blanca E. Himes, Jeffrey J. Fredberg, Kelan G. Tantisira, Stephanie A. Shore, Quan Lu

Source: Nature Communications, Vol 14, Iss 1, Pp 1-11 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/627590137e8e4854b2f7c749238e36dd

Plain language summary: does race or income status affect the cancer treatments that patients with metastatic castration-sensitive prostate cancer (mCSPC) receive in the United States?

Authors: George, Daniel J., Agarwal, Neeraj, Ramaswamy, Krishnan, Klaassen, Zachary, Bitting, Rhonda L., Russell, David, Sandin, Rickard, Emir, Birol, Yang, Hongbo, Song, Wei, Lin, Yilu, Hong, Agnes, Gao, Wei, Freedland, Stephen J.

Source: Future Oncology; May2025, Vol. 21 Issue 11, p1307-1315, 9p

Plain language summary: how long do patients with metastatic castration-resistant prostate cancer (mCRPC) live when taking abiraterone or enzalutamide in the real world?

Authors: George, Daniel J., Ramaswamy, Krishnan, Yang, Hongbo, Liu, Qing, Zhang, Adina, Greatsinger, Alexandra, Ivanova, Jasmina, Thompson, Betty, Emir, Birol, Hong, Agnes, Freedland, Stephen J.

Source: Future Oncology; May2025, Vol. 21 Issue 11, p1297-1306, 10p

Impact of physicians' awareness of prostate-specific antigen doubling time (PSADT) on treatment (Tx) decisions in high-risk (HR) biochemically recurrent (BCR) prostate cancer (PC).

Authors: Morgans, Alicia K.¹ (AUTHOR), Touya, Maelys² (AUTHOR), El-Chaar, Nader N.³ (AUTHOR), Elsouda, Dina³ (AUTHOR), Ramaswamy, Krishnan⁴ (AUTHOR), Adejumo, Kelechi L.⁵ (AUTHOR), Gentile, Danielle⁵ (AUTHOR), Feinberg, Bruce A.⁵ (AUTHOR), Asgarisabet, Parisa⁵ (AUTHOR), Pathak, Prathamesh⁵ (AUTHOR), Freedland, Stephen J.⁶ (AUTHOR)

Source: Journal of Clinical Oncology. 2/10/2025 Supplement5, Vol. 43, p354-354. 125p.

Effect of Enzalutamide plus Androgen Deprivation Therapy on Health-related Quality of Life in Patients with Metastatic Hormone-sensitive Prostate Cancer: An Analysis of the ARCHES Randomised, Placebo-controlled, Phase 3 Study

Authors: Stenzl, Arnulf, Dunshee, Curtis, De Giorgi, Ugo, Alekseev, Boris, Iguchi, Taro, Szmulewitz, Russell Z., Flaig, Thomas W., Tombal, Bertrand, Morlock, Robert, Ivanescu, Cristina, Ramaswamy, Krishnan, Saad, Fred, Armstrong, Andrew J.

Source: In European Urology October 2020 78(4):603-614

Clinical Outcomes of First-line Sunitinib Followed by Immuno-oncology Checkpoint Inhibitors in Patients With Metastatic Renal Cell Carcinoma

Authors: Wells, J. Connor, Graham, Jeffrey, Beuselinck, Benoit, Bjarnason, Georg A., Donskov, Frede, Hansen, Aaron R., McKay, Rana R., Vaishampayan, Ulka, De Velasco, Guillermo, Duh, Mei S., Huynh, Lynn, Nguyen, Catherine, Zanotti, Giovanni, Ramaswamy, Krishnan, Choueiri, Toni K., Heng, Daniel Y.C.

Source: In Clinical Genitourinary Cancer August 2020 18(4):e350-e359

Cytokine-induced molecular responses in airway smooth muscle cells inform genome-wide association studies of asthma

Authors: Emma E. Thompson, Quynh Dang, Blair Mitchell-Handley, Kavitha Rajendran, Sumati Ram-Mohan, Julian Solway, Carole Ober, Ramaswamy Krishnan

Source: Genome Medicine, Vol 12, Iss 1, Pp 1-14 (2020)

Subject Terms: Asthma, Epigenetics, Differential expression, Cases, Controls, Medicine, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13073-020-00759-w; https://doaj.org/toc/1756-994X

Access URL: https://doaj.org/article/37452189b587449ab05b8f54a59cf4b4

Influence of process parameters on the optimisation of crystalline phase, size and strain of multiferroic Bismuth Iron Tri Oxide (BiFeO3) nanoceramics: A MCDM based TOPSIS approach

Authors: Ramasamy, Venkatapathy, Subramanian, Yathavan, Varadarajan, Sridharan, Ramaswamy, Krishnan, Kaliappan, Kamaraj, Arulmozhi, Durairajan, Srinivasan, Gokul Raj, Gubendiran, Ramesh Kumar

Source: In Ceramics International 1 February 2020 46(2):1457-1471

Patient-reported outcomes following enzalutamide or placebo in men with non-metastatic, castration-resistant prostate cancer (PROSPER): a multicentre, randomised, double-blind, phase 3 trial

Authors: Tombal, Bertrand, Saad, Fred, Penson, David, Hussain, Maha, Sternberg, Cora N, Morlock, Robert, Ramaswamy, Krishnan, Ivanescu, Cristina, Attard, Gerhardt

Source: In The Lancet Oncology April 2019 20(4):556-569

Treatment patterns and outcomes in patients with nonmetastatic castration-resistant prostate cancer in the United States.

Authors: Swami, Umang, Hong, Agnes, Diessner, Brandon, Young, Christopher, Bunner, Scott H, Xie, Bin, Ramaswamy, Krishnan, Chastek, Benjamin, El Chaar, Nader, Gupta, Sumati

Source: Future Oncology; 2024, Vol. 20 Issue 32, p2467-2480, 14p

Real‐world prevalence of adverse events with first‐line systemic therapies among patients with metastatic castration‐sensitive prostate cancer.

Authors: Swami, Umang, Xie, Bin, Young, Christopher, Ramaswamy, Krishnan, El‐Chaar, Nader, Gao, Wei, Yang, Hongbo, Wang, Yao, Mucha, Lisa

Source: Prostate; Nov2024, Vol. 84 Issue 15, p1387-1397, 11p

Important Group Differences on the Functional Assessment of Cancer Therapy–Kidney Symptom Index Disease-Related Symptoms in Patients with Metastatic Renal Cell Carcinoma

Authors: Cella, David, Motzer, Robert J., Rini, Brian I., Cappelleri, Joseph C., Ramaswamy, Krishnan, Hariharan, Subramanian, Arondekar, Bhakti, Bushmakin, Andrew G.

Source: In Value in Health December 2018 21(12):1413-1418

High Throughput Traction Force Microscopy Using PDMS Reveals Dose-Dependent Effects of Transforming Growth Factor-β on the Epithelial-to-Mesenchymal Transition

Authors: Haruka Yoshie, author¹, Newsha Koushki, author¹, Clayton Molter, author¹, Peter M. Siegel, author^{2, 3}, Ramaswamy Krishnan, author⁴, Allen J. Ehrlicher, author^{1, 2}

Source: Journal of Visualized Experiments. (148)

Availability: http://www.jove.com/video/59364

Cytokeratin 5 determines maturation of the mammary myoepithelium

Authors: Vivi Deckwirth, Eeva Kaisa Rajakylä, Sandhanakrishnan Cattavarayane, Anna Acheva, Niccole Schaible, Ramaswamy Krishnan, Juan José Valle-Delgado, Monika Österberg, Pia Björkenheim, Antti Sukura, Sari Tojkander

Source: iScience, Vol 24, Iss 5, Pp 102413- (2021)

Subject Terms: Cell Biology, Developmental Biology, Biophysics, Science

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2589004221003813; https://doaj.org/toc/2589-0042

Access URL: https://doaj.org/article/48a097948b3d46a282c483d28a63f2ea