The dawn of spatiotemporal transcriptomics

Authors: Siying Wang, Shichao Lin, Chaoyong Yang

Source: Biomedical Analysis, Vol 1, Iss 2, Pp 154-161 (2024)

Subject Terms: Gene expression dynamics, Spatiotemporal analysis, Spatial transcriptomics, Metabolic RNA labeling, Biotechnology, TP248.13-248.65, Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2950435X24000192; https://doaj.org/toc/2950-435X

Access URL: https://doaj.org/article/835b0c901ba64ba68478908388bf9d11

Splice_sim: a nucleotide conversion-enabled RNA-seq simulation and evaluation framework

Authors: Niko Popitsch, Tobias Neumann, Arndt von Haeseler, Stefan L. Ameres

Source: Genome Biology, Vol 25, Iss 1, Pp 1-19 (2024)

Subject Terms: Nucleotide conversion sequencing, Metabolic RNA labeling, SLAMseq, RNA-BS-seq, 3′ end sequencing, Spliced read mapping, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/82b79117ed5b4c5591dea76d334124af

A single‐cell RNA labeling strategy for measuring stress response upon tissue dissociation

Authors: Anika Neuschulz, Olga Bakina, Victor Badillo‐Lisakowski, Pedro Olivares‐Chauvet, Thomas Conrad, Michael Gotthardt, Helmut Kettenmann, Jan Philipp Junker

Source: Molecular Systems Biology, Vol 19, Iss 2, Pp 1-13 (2022)

Subject Terms: cellular stress response, RNA labeling, single‐cell transcriptomics, SLAM‐seq, tissue dissociation, Biology (General), QH301-705.5, Medicine (General), R5-920

File Description: electronic resource

Relation: https://doaj.org/toc/1744-4292

Access URL: https://doaj.org/article/082ccd7c192740a3a8f78db215e2cb8b

Group II Introns: Highly Structured yet Dynamic

Authors: Esra Ahunbay, Susann Zelger-Paulus, Roland K. O. Sigel

Source: CHIMIA, Vol 77, Iss 4 (2023)

Subject Terms: Group II intron, RNA catalysis, RNA folding, RNA labeling, RNA splicing, Chemistry, QD1-999

File Description: electronic resource

Relation: https://www.chimia.ch/chimia/article/view/6305; https://doaj.org/toc/0009-4293; https://doaj.org/toc/2673-2424

Access URL: https://doaj.org/article/0b8f87d0158d4b73b2de2bbd35250ed2

Potential Use of CRISPR/Cas13 Machinery in Understanding Virus–Host Interaction

Authors: Mahmoud Bayoumi, Muhammad Munir

Source: Frontiers in Microbiology, Vol 12 (2021)

Subject Terms: CRISPR-Cas, Cas13, RNA interference, RNA-labeling, virus interference, virus resistance, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.743580/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/d861ebec52584273a953fdd1037cd764

Splice_sim: a nucleotide conversion-enabled RNA-seq simulation and evaluation framework

Authors: Niko Popitsch (Department of Biochemistry and Cell Biology, Max Perutz Labs, University of Vienna), Tobias Neumann (Max Perutz Labs, University of Vienna), Arndt von Haeseler (Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna), Stefan L. Ameres (Department of Biochemistry and Cell Biology, Max Perutz Labs, University of Vienna)

Availability: http://data.europeana.eu/aggregation/europeana/1300/https___phaidra_univie_ac_at_o_2076355

Analysis of IAV Replication and Co-infection Dynamics by a Versatile RNA Viral Genome Labeling Method

Authors: Dan Dou, Iván Hernández-Neuta, Hao Wang, Henrik Östbye, Xiaoyan Qian, Swantje Thiele, Patricia Resa-Infante, Nancy Mounogou Kouassi, Vicky Sender, Karina Hentrich, Peter Mellroth, Birgitta Henriques-Normark, Gülsah Gabriel, Mats Nilsson, Robert Daniels

Source: Cell Reports, Vol 20, Iss 1, Pp 251-263 (2017)

Subject Terms: RNA viruses, viral genome labeling and localization, influenza A virus, RNA labeling, vRNAs, IAV entry, IAV cell co-infections, IAV replication cycle, single-cell IAV genome trafficking, single-nucleotide specificity, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124717308185; https://doaj.org/toc/2211-1247

Access URL: https://doaj.org/article/2ee362c616d947dfbed1f3838ee56203

Transcriptome Profiling of In-Vivo Produced Bovine Pre-implantation Embryos Using Two-color Microarray Platform

Authors: Reza Salehi, author¹, Stephen C.M. Tsoi, author¹, Marcos G. Colazo, author², Divakar J. Ambrose, author^{1, 2}, Claude Robert, author³, Michael K. Dyck, author¹

Source: Journal of Visualized Experiments. (119)

Availability: http://www.jove.com/video/53754

Application of Live-Cell RNA Imaging Techniques to the Study of Retroviral RNA Trafficking

Authors: Darrin V. Bann, Leslie J. Parent

Source: Viruses, Vol 4, Iss 6, Pp 963-979 (2012)

Subject Terms: RNA labeling, retrovirus, live-cell, Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.mdpi.com/1999-4915/4/6/963; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/26c5ddeba373456a89325a7257599b0b

A Spotlight on Viruses—Application of Click Chemistry to Visualize Virus-Cell Interactions

Authors: Thorsten G. Müller, Volkan Sakin, Barbara Müller

Source: Molecules, Vol 24, Iss 3, p 481 (2019)

Subject Terms: virus, fluorescence microscopy, bioorthogonal, click chemistry, amber suppression, single virus tracking, super-resolution microscopy, nucleoside analog, genetic code expansion, non-canonical amino acid, unnatural amino acid, metabolic labeling, de novo DNA labeling, de novo RNA labeling, DNA virus, RNA virus, retrovirus, replication compartments, viral factories, inclusion bodies, reverse transcription, uncoating, EdU, EU, Organic chemistry, QD241-441

File Description: electronic resource

Relation: https://www.mdpi.com/1420-3049/24/3/481; https://doaj.org/toc/1420-3049

Access URL: https://doaj.org/article/070aaf03b88b4b879cb5d09ebfd80ba5

Performing Custom MicroRNA Microarray Experiments

Authors: Xiaoxiao Zhang, author¹, Yan Zeng, author^{1, 2}

Source: Journal of Visualized Experiments. (56)

Availability: http://www.jove.com/video/3250

Evidence for a Single Rolling Circle in the Replication of Potato Spindle Tuber Viroid

Authors: Branch, Andrea D., Benenfeld, Bonnie J., Robertson, Hugh D.

Source: Proceedings of the National Academy of Sciences of the United States of America, 1988 Dec 01. 85(23), 9128-9132.

Access URL: https://www.jstor.org/stable/32901

RNA transport during TMV cell-to-cell movement

Authors: Eduardo José ePeña, Manfred eHeinlein

Source: Frontiers in Plant Science, Vol 3 (2012)

Subject Terms: Cytoskeleton, Endoplasmic Reticulum, Plasmodesmata, RNA Transport, Tobacco Mosaic Virus, RNA labeling, Plant culture, SB1-1110

File Description: electronic resource

Relation: http://journal.frontiersin.org/Journal/10.3389/fpls.2012.00193/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/601f2af67c9749fb850487f575564cb1

Evaluation of alternative RNA labeling protocols for transcript profiling with Arabidopsis AGRONOMICS1 tiling arrays

Authors: Müller Marlen, Patrignani Andrea, Rehrauer Hubert, Gruissem Wilhelm, Hennig Lars

Source: Plant Methods, Vol 8, Iss 1, p 18 (2012)

Subject Terms: Transcript profiling, Arabidopsis, Microarray, AGRONOMICS1, Tiling array, RNA labeling, Plant culture, SB1-1110, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.plantmethods.com/content/8/1/18; https://doaj.org/toc/1746-4811

Access URL: https://doaj.org/article/42ea6de38921453cb91b9569c7562c6b

EFFECT OF X-IRRADIATION ON POLYRIBOSOME ORGANIZATION AND RNA LABELING IN THE LIVER OF NORMAL AND ADRENALECTOMIZED RATS.

Contributors: Gaetani, S

Source: Radiat. Res., 39: 289-304(Aug. 1969).; Other Information: Orig. Receipt Date: 31-DEC-69

File Description: Medium: X

Access URL: http://www.osti.gov/scitech/biblio/4780397

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