Genetic structure and conservation implications of Lancea tibetica (Mazaceae), a traditional Tibetan medicinal plant endemic to the Qinghai- Tibet Plateau

Authors: Mingze Xia, Xiaofeng Chi, Jingya Yu, Yun Han, Shuang Han, Shilong Chen, Yan Li, Faqi Zhang

Source: BMC Plant Biology, Vol 25, Iss 1, Pp 1-14 (2025)

Subject Terms: Lancea tibetica, Allopatric divergence, RAD-seq, Genetic structure, Qinghai-Tibet Plateau, Species distribution modeling, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/5388a0401e4a41f0a5b64734aec56480

Using RAD-seq to identify and differentiate the medicinal herb Scrophularia ningpoensis and its adulterants

Authors: Lei Guo, Xia Wang, Hong Li, Mengli Zhou, Liqin Liu, Ruihong Wang, Pan Li

Source: BMC Genomics, Vol 26, Iss 1, Pp 1-10 (2025)

Subject Terms: RAD-seq, SNP, Scrophularia, Species identification, Phylogenomics, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/6ffd11fc29d44ee18a190e648d61dca0

SNP loci identification and KASP marker development system for genetic diversity, population structure, and fingerprinting in sweetpotato (Ipomoea batatas L.)

Authors: Feiyang Yang, Tao Lang, Jingyu Wu, Cong Zhang, Huijuan Qu, Zhigang Pu, Fan Yang, Ma Yu, Junyan Feng

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-17 (2024)

Subject Terms: Sweetpotato, RAD-seq, SNP, KASP marker, DNA fingerprinting, Biotechnology, TP248.13-248.65, Genetics, QH426-470

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Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/8d2c6bca7c2d4794afb75f49b6e23007

High Crimean-Congo hemorrhagic fever incidence linked to greater genetic diversity and differentiation in Hyalomma marginatum populations in Türkiye

Authors: Olcay Hekimoğlu, İsmail K. Sağlam

Source: Parasites & Vectors, Vol 17, Iss 1, Pp 1-11 (2024)

Subject Terms: Hyalomma marginatum, Türkiye, CCHF, RAD-Seq, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://doaj.org/toc/1756-3305

Access URL: https://doaj.org/article/d0018e426f94405398c4809af686cda8

Atlantic mackerel population structure does not support genetically distinct spawning components [version 2; peer review: 1 approved, 2 approved with reservations]

Authors: Imanol Aguirre-Sarabia, Alice Manuzzi, Dorte Bekkevold, Natalia Díaz-Arce, Jessica Gomez-Garrido, Teunis Jansen, Marta Gut, Tyler S. Alioto, Sonia Sanchez-Maroño, Martin Castonguay, Naiara Rodriguez-Ezpeleta, Paula Álvarez

Source: Open Research Europe, Vol 4 (2025)

Subject Terms: Atlantic mackerel, complete genome, RAD-seq, population structure, genome-wide SNPs, fisheries management, eng, Science, Social Sciences

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Relation: https://open-research-europe.ec.europa.eu/articles/4-82/v2; https://doaj.org/toc/2732-5121

Access URL: https://doaj.org/article/2045652be4154f4c9ff89b2a4c95e20c

Genetic diversity and population structure of the endangered medicinal plant Ferula sinkiangensis

Authors: Hafiz Muhammad Wariss, Tianxing Liu, Hongxiang Zhang, Jiaju Wu, Zhaoping Yang, Wenjun Li

Source: Global Ecology and Conservation, Vol 58, Iss , Pp e03437- (2025)

Subject Terms: Ferula sinkiangensis, RAD-seq, Genetic diversity, Population structure, Demographic history, Conservation implications, Ecology, QH540-549.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2351989425000381; https://doaj.org/toc/2351-9894

Access URL: https://doaj.org/article/f52385414bd0468bb4657166291c9342

Phylogenetics, Genetics, and Breeding of Medicinal Plants

Contributors: Zaman, Wajid, Manghwar, Hakim

Subject Terms: chloroplast genome, comparative genomics, sequence divergence, RNA editing sites, phylogeny, divergence time, ploidy, DNA barcoding, ITS2 secondary structure, medicinal herbs, species discrimination, spiny coriander, abiotic stress, divergence, expression profile, jatropha, SAP genes, Curcuma caesia, AMMI, GGE, high essential oil, MLT, regression, flow cytometry, medicinal plant, multiple shoots, plant regeneration, rhizomes, gene expression, medicinal plants, acacetin, transcriptomics, biosynthesis, flavonoids, conservation, genetic variability, M. officinalis, population structure, Prunella vulgaris L., reference gene, data normalization, RT-qPCR, Spica Prunellae, medicinal herb, Dendrobium catenatum, glucomannan, biosynthetic pathway, structure, bioactivity, dietary fiber, hidden hunger, biofortification, Tinospora cordifolia, genetic diversity, g-SSR, EST-SSR, SCoT markers, principal coordinate analysis (PCoA), cross-species transferability, provenance identification, genuine regional drugs, RAD-seq, SNP, indirect organogenesis, molecular marker, plant tissue culture, somaclonal variation, Anisodus tanguticus Maxim., comparative analysis, positive selection, phylogenetic relationship, hyoscyameae tribe, diversity, the Millettiod legumes, ecological opportunities, Miocene, Bupleurum falcatum, transcriptome, saikosaponin biosynthetic pathway, WGCNA, Hypoestes forskaolii, justiceae, phylogenomics, Araceae, genetic discrimination, molecular phylogeny, taro, soybean, R. solani, anastomosis groups, distribution, GO analysis, maize, GSEA, PCR, drought tolerant, ginger, GRAS family, phylogenetic analyses, Fritillaria cirrhosa D. Don, cytochrome P450, isosteroidal alkaloid, full-length transcriptome, Ophiorrhiza baviensis, Chrysanthemum morifolium Ramat., bHLH transcription factor, CmbHLHs, resistance, necrotrophic fungus, Helichrysum, barcodes, internal transcribed spacers, traceability, planting material, traditional Chinese medicine (TCM), complete chloroplast genome, phylogenetic, chromatographic fingerprint, quality marker (Q-Marker), DNA barcode, Nepenthes, rbcL, ITS1, ITS2, barcoding gap, secondary structure predictions, metabolome profiling, flavonoid metabolism, Acanthus ilicifolius, medicinal value, aromatics, nutrient content, essential oils, salinity stress, drought stress, breeding prospects, Diplotaxis spp., plastid markers, nuclear markers, DNA sequencing, structure analysis, high resolution melting, phylogenesis, Sicyos angulatus, comparative chloroplast genome analysis, Cucurbitaceae family, Hippophae, chemical contents, cultivar development, DNA markers, genetics, systematics, breeding, genomic selection, quantitative trait locus analysis, red perilla, Biology, life sciences

File Description: application/octet-stream

Access URL: https://directory.doabooks.org/handle/20.500.12854/137674
https://mdpi.com/books/pdfview/book/8891

Genomic insights into the biogeography and evolution of Galápagos iguanas

Authors: Paradiso, Cecilia ^{a, 1, ⁎}, Gratton, Paolo ^{b, 1}, Trucchi, Emiliano ^d, López-Delgado, Julia ^e, Gargano, Marco ^d, Garizio, Lorenzo ^a, Carr, Ian M. ^f, Colosimo, Giuliano ^b, Sevilla, Christian ^g, Welch, Mark E. ^c, Firdaus-Raih, Mohd ^h, Noor Mat-Isa, Mohd ⁱ, Goodman, Simon J. ^e, Gentile, Gabriele ^{b, ⁎}

Source: In Molecular Phylogenetics and Evolution March 2025 204

Population genomic analysis based on geographically large-scale samples provides insights into the evolutionary history of the wood oil plant Lindera glauca in East Asia

Authors: Xiong, Biao ^{a, b, e}, Xie, Lun ^b, Ren, Chaoqian ^c, Qiu, Yingxiong ^d, Cronk, Quentin ^{e, f}, Zhu, Shanshan ^{a, ⁎}

Source: In Industrial Crops & Products March 2025 225

A Tale of Two Lakes: Divergent Evolutionary Trajectories of Two Daphnia Populations Experiencing Distinct Environments

Authors: Matthew J. Wersebe, Torsten Günther, Philip K. Morton, Lawrence J. Weider, Dagmar Frisch

Source: Ecology and Evolution, Vol 14, Iss 12, Pp n/a-n/a (2024)

Subject Terms: daphnia, eutrophication, genomics, limnology, natural selection, RAD‐Seq, Ecology, QH540-549.5

File Description: electronic resource

Relation: https://doaj.org/toc/2045-7758

Access URL: https://doaj.org/article/bbf2cfb807c742d4be4938dde30b5d55

Phylogeography and population genomics of the critically endangered aquatic plant Caldesia grandis in China

Authors: Dong-Ying Yan, Shuai Peng, Samuli Lehtonen, Jin-Ming Chen, Zhi-Zhong Li

Source: Global Ecology and Conservation, Vol 55, Iss , Pp e03235- (2024)

Subject Terms: Alismataceae, Conservation genetics, RAD-seq, Rare species, Refuge, Ecology, QH540-549.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2351989424004396; https://doaj.org/toc/2351-9894

Access URL: https://doaj.org/article/d73cce9b8a4a4f4c8bb797c5f97508db

RAD-seq data reveals robust phylogeny and morphological evolutionary history of Rhododendron

Authors: Yuanting Shen, Gang Yao, Yunfei Li, Xiaoling Tian, Shiming Li, Nian Wang, Chengjun Zhang, Fei Wang, Yongpeng Ma

Source: Horticultural Plant Journal, Vol 10, Iss 3, Pp 866-878 (2024)

Subject Terms: Rhododendron, RAD-seq, Missing data, Quartet sampling (QS), Ancestral state reconstruction, Plant culture, SB1-1110

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2468014123001425; https://doaj.org/toc/2468-0141

Access URL: https://doaj.org/article/57cc299a90fa45d2b775208e1c09ad18

Which contributes more to the relict flora distribution pattern in East Asia, geographical processes or climate change? New evidence from the phylogeography of Rehderodendron kwangtungense

Authors: Jiehao Jin, Wanyi Zhao, Sufang Chen, Chao Gu, Zhihui Chen, Zhongcheng Liu, Wenbo Liao, Qiang Fan

Source: BMC Plant Biology, Vol 24, Iss 1, Pp 1-15 (2024)

Subject Terms: Population genetics, RAD-seq, Fragmented distributions, Mountain erosion, Panplain, Species diffusing, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/5b6a6004f4db4fa28be22884446d71c0

Phylogenetic insights into the Salicaceae: The evolution of willows and beyond

Authors: Ogutcen, Ezgi ^{a, b, ⁎}, de Lima Ferreira, Paola ^{a, c}, Wagner, Natascha D. ^d, Marinček, Pia ^d, Vir Leong, Jing ^{a, e}, Aubona, Gibson ^{a, e}, Cavender-Bares, Jeannine ^f, Michálek, Jan ^{a, g}, Schroeder, Lucy ^f, Sedio, Brian E. ^{h, i}, Vašut, Radim J. ^{j, k}, Volf, Martin ^{a, e}

Source: In Molecular Phylogenetics and Evolution October 2024 199

RAD-seq data for Engelhardia roxburghiana provide insights into the palaeogeography of Hainan Island and its relationship to mainland China since the late Eocene

Authors: Huang, Pei-Han ^{a, b, f}, Wang, Tian-Rui ^{b, c, f}, Li, Min ^{a, f}, Lu, Zi-Jia ^{b, e}, Su, Ren-Ping ^{a, f}, Fang, Ou-Yan ^{a, f}, Li, Lang ^a, Zhou, Shi-Shun ^d, Tan, Yun-Hong ^d, Meng, Hong-Hu ^{a, d, ⁎}, Song, Yi-Gang ^{b, ⁎}, Li, Jie ^{a, ⁎}

Source: In Palaeogeography, Palaeoclimatology, Palaeoecology 1 October 2024 651

Genetic structure of a narrowly distributed species Chimonobambusa tumidissinoda in the Yunnan-Guizhou Plateau, and its implications for conservation

Authors: Xia-Ying Ye, Wei-Hua Wang, Guo-Rong Wei, Bing Li, Yan Li, Peng-Fei Ma

Source: Global Ecology and Conservation, Vol 53, Iss , Pp e03028- (2024)

Subject Terms: Chimonobambusa tumidissinoda, RAD-seq, Genetic diversity, Demographic history, Conservation, Ecology, QH540-549.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2351989424002324; https://doaj.org/toc/2351-9894

Access URL: https://doaj.org/article/6b2327d3192142cab3c89721e56fc8b6

Genetic diversity, population structure, and phylogenetic relationships of a widespread East Asia herb, Cryptotaenia japonica Hassk. (Apiaceae) based on genomic SNP data generated by dd-RAD sequencing

Authors: Baocheng Wu, Jun Wen, Ruisen Lu, Wei Zhou

Source: Frontiers in Genetics, Vol 15 (2024)

Subject Terms: RAD-seq, Cryptotaenia japonica, Apiaceae, genetic diversity, population structure, gene flow, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2024.1368760/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/6ace65c525e14a2db8c14751934a3b0a

Unveiling a potential threat to forest ecosystems: molecular diagnosis of Alliaria petiolata, a newly introduced alien plant in Korea

Authors: Tae-Young Choi, Dong Chan Son, Ami Oh, Soo-Rang Lee

Source: Frontiers in Plant Science, Vol 15 (2024)

Subject Terms: invasive species, polyploidy, RAD-seq, chromosome number, admixture, Alliaria petiolata, Plant culture, SB1-1110

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Relation: https://www.frontiersin.org/articles/10.3389/fpls.2024.1395676/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/88d75672221942ebbac81e63755253ec

Analysis of genetic diversity among three Triplophysa tenuis populations by RAD-seq

Authors: Wenqiong Wu, Junqiang Qiu, Yue Lin, Xike Li, Wenjuan Li, Yuanliang Duan, Yuanshuai Fu

Source: Frontiers in Molecular Biosciences, Vol 11 (2024)

Subject Terms: Triplophysa tenuis, SSR, RAD-seq, genetic diversity, population structure, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmolb.2024.1373754/full; https://doaj.org/toc/2296-889X

Access URL: https://doaj.org/article/e4722b810a9845738aee54eb7deb9f5d

Genome-wide diversity, population structure and signatures of inbreeding in the African buffalo in Mozambique

Authors: Paolo Colangelo, Marika Di Civita, Carlos M. Bento, Paolo Franchini, Axel Meyer, Nadiya Orel, Luis C. B. G. das Neves, Fernando C. Mulandane, Joao S. Almeida, Gabriele Senczuk, Fabio Pilla, Simone Sabatelli

Source: BMC Ecology and Evolution, Vol 24, Iss 1, Pp 1-14 (2024)

Subject Terms: RAD-seq, Population genomics, Homozygosity, Admixture, Gene flow, Syncerus caffer caffer, Ecology, QH540-549.5, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/2730-7182

Access URL: https://doaj.org/article/b56d32e4c8ca4d2381d84df858ee2c83