Enzymatically hydrolyzed fluorescence-based chemical probe enables in situ mapping of chitinase activity in the rhizosphere

Authors: Zegeye, Elias K., Lin, Vivian S., Nuñez, Jamie R., Sconzo, Nick A., Purvine, Samuel O., Wright, Aaron T., Moran, James J.

Source: In Soil Biology and Biochemistry September 2023 184

Metabolic profiling of two white-rot fungi during 4-hydroxybenzoate conversion reveals biotechnologically relevant biosynthetic pathways.

Authors: Monteiro, Lummy Maria Oliveira, del Cerro, Carlos, Kijpornyongpan, Teeratas, Yaguchi, Allison, Bennett, Anna, Donohoe, Bryon S., Ramirez, Kelsey J., Benson, Alex F., Mitchell, Hugh D., Purvine, Samuel O., Markillie, Lye Meng, Burnet, Meagan C., Bloodsworth, Kent J., Bowen, Benjamin P., Harwood, Thomas V., Louie, Katherine, Northen, Trent, Salvachúa, Davinia

Source: Communications Biology; 2/12/2025, Vol. 8 Issue 1, p1-15, 15p

Subject Terms: BIOTECHNOLOGY, LIFE sciences, CARBON compounds, TRAMETES versicolor, AROMATIC compounds

Salinity‐Induced Photorespiration in Populus Vascular Tissues Facilitate Nitrogen Reallocation.

Authors: Wilhelmi, Maria del Mar Rubio, Maneejantra, Nuchada, Balasubramanian, Vimal Kumar, Purvine, Samuel O., Williams, Sarai, DiFazio, Stephen, Stewart, C. Neal, Ahkami, Amir H., Blumwald, Eduardo

Source: Plant, Cell & Environment; Jan2025, Vol. 48 Issue 1, p781-791, 11p

Subject Terms: EUROPEAN aspen, PLANT cells & tissues, GLUTAMINE synthetase, FOLIAGE plants, ABIOTIC stress

Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment

Authors: Wilson, Rachel M., Tfaily, Malak M., Kolton, Max, Johnston, Eric R., Petro, Caitlin, Zalman, Cassandra A., Hanson, Paul J., Heyman, Heino M., Kyle, Jennifer E., Hoyt, David W., Eder, Elizabeth K., Purvine, Samuel O., Kolka, Randall K., Sebestyen, Stephen D., Griffiths, Natalie A., Schadt, Christopher W., Keller, Jason K., Bridgham, Scott D., Chanton, Jeffrey P., Kostka, Joel E.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Jun . 118(25), 1-11.

Access URL: https://www.jstor.org/stable/27041058

Anaerobic gut fungi are an untapped reservoir of natural products

Authors: Swift, Candice L., Louie, Katherine B., Bowen, Benjamin P., Olson, Heather M., Purvine, Samuel O., Salamov, Asaf, Mondo, Stephen J., Solomon, Kevin V., Wright, Aaron T., Northen, Trent R., Grigoriev, Igor V., Keller, Nancy P., O’Malley, Michelle A.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 May 01. 118(18), 1-10.

Access URL: https://www.jstor.org/stable/27040358

Intracellular pathways for lignin catabolism in white-rot fungi

Authors: del Cerro, Carlos, Erickson, Erika, Dong, Tao, Wong, Allison R., Eder, Elizabeth K., Purvine, Samuel O., Mitchell, Hugh D., Weitz, Karl K., Markillie, Lye Meng, Burnet, Meagan C., Hoyt, David W., Chu, Rosalie K., Cheng, Jan-Fang, Ramirez, Kelsey J., Katahira, Rui, Xiong, Wei, Himmel, Michael E., Subramanian, Venkataramanan, Linger, Jeffrey G., Salvachúa, Davinia

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Mar 01. 118(9), 1-10.

Access URL: https://www.jstor.org/stable/27027430

Widespread polycistronic gene expression in green algae

Authors: Gallaher, Sean D., Craig, Rory J., Ganesan, Iniyan, Purvine, Samuel O., McCorkle, Sean R., Grimwood, Jane, Strenkert, Daniela, Davidi, Lital, Roth, Melissa S., Jeffers, Tim L., Lipton, Mary S., Niyogi, Krishna K., Schmutz, Jeremy, Theg, Steven M., Blaby-Haas, Crysten E., Merchant, Sabeeha S.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Feb . 118(7), 1-10.

Access URL: https://www.jstor.org/stable/27027322

Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440

Authors: Salvachúa, Davinia, Werner, Allison Z., Pardo, Isabel, Michalska, Martyna, Black, Brenna A., Donohoe, Bryon S., Haugen, Stefan J., Katahira, Rui, Notonier, Sandra, Ramirez, Kelsey J., Amore, Antonella, Purvine, Samuel O., Zink, Erika M., Abraham, Paul E., Giannone, Richard J., Poudel, Suresh, Laible, Philip D., Hettich, Robert L., Beckham, Gregg T.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2020 Apr . 117(17), 9302-9310.

Access URL: https://www.jstor.org/stable/26929935

Structure Dependent Determination of Organophosphate Targets in Mammalian Tissues Using Activity-Based Protein Profiling

Authors: Lin, Vivian S., Volk, Regan F., DeLeon, Adrian J., Anderson, Lindsey N., Purvine, Samuel O., Shukla, Anil K., Bernstein, Hans C., Smith, Jordan N., Wright, Aaron T.

Source: Chemical research in toxicology. 33(2):414-425

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN631511099&indx=1&recIds=ETOCRN631511099

Multiomics resolution of molecular events during a day in the life of Chlamydomonas

Authors: Strenkert, Daniela, Schmollinger, Stefan, Gallaher, Sean D., Salomé, Patrice A., Purvine, Samuel O., Nicora, Carrie D., Mettler-Altmann, Tabea, Soubeyrand, Eric, Weber, Andreas P. M., Lipton, Mary S., Basset, Gilles J., Merchant, Sabeeha S.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2019 Feb 01. 116(6), 2374-2383.

Access URL: https://www.jstor.org/stable/26663826

Iron rescues glucose-mediated photosynthesis repression during lipid accumulation in the green alga Chromochloris zofingiensis.

Authors: Jeffers, Tim L., Purvine, Samuel O., Nicora, Carrie D., McCombs, Ryan, Upadhyaya, Shivani, Stroumza, Adrien, Whang, Ken, Gallaher, Sean D., Dohnalkova, Alice, Merchant, Sabeeha S., Lipton, Mary, Niyogi, Krishna K., Roth, Melissa S.

Source: Nature Communications; 7/18/2024, Vol. 15 Issue 1, p1-19, 19p

Subject Terms: GREEN algae, FERREDOXINS, PHOTOSYNTHESIS, ENZYME regulation, IRON, LIPID synthesis

Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways

Authors: Hurley, Jennifer M., Jankowski, Meaghan S., De los Santos, Hannah, Crowell, Alexander M., Fordyce, Samuel B., Zucker, Jeremy D., Kumar, Neeraj, Purvine, Samuel O., Robinson, Errol W., Shukla, Anil, Zink, Erika, Cannon, William R., Baker, Scott E., Loros, Jennifer J., Dunlap, Jay C.

Source: In Cell Systems 26 December 2018 7(6):613-626

Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone

Authors: Graham, Emily B., Crump, Alex R., Kennedy, David W., Arntzen, Evan, Fansler, Sarah, Purvine, Samuel O., Nicora, Carrie D., Nelson, William, Tfaily, Malak M., Stegen, James C.

Source: In Science of the Total Environment 15 November 2018 642:742-753

Addressing the challenge of soil metaproteome complexity by improving metaproteome depth of coverage through two-dimensional liquid chromatography

Authors: Callister, Stephen J., Fillmore, Thomas L., Nicora, Carrie D., Shaw, Jared B., Purvine, Samuel O., Orton, Daniel J., White, Richard Allen, III, Moore, Ronald J., Burnet, Meagan C., Nakayasu, Ernesto S., Payne, Samuel H., Jansson, Janet K., Paša-Tolić, Ljiljana

Source: In Soil Biology and Biochemistry October 2018 125:290-299

MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape

Authors: Menachery, Vineet D., Schäfer, Alexandra, Burnum-Johnson, Kristin E., Mitchell, Hugh D., Eisfeld, Amie J., Walters, Kevin B., Nicora, Carrie D., Purvine, Samuel O., Casey, Cameron P., Monroe, Matthew E., Weitz, Karl K., Stratton, Kelly G., Webb-Robertson, Bobbie-Jo M., Gralinski, Lisa E., Metz, Thomas O., Smith, Richard D., Waters, Katrina M., Sims, Amy C., Kawaoka, Yoshihiro, Baric, Ralph S.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2018 Jan . 115(5), E1012-E1021.

Access URL: https://www.jstor.org/stable/26507305

Quantitative Proteomic Analysis Indicates Increased Synthesis of a Quinolone by Pseudomonas aeruginosa Isolates from Cystic Fibrosis Airways

Authors: Guina, Tina, Purvine, Samuel O., Yi, Eugene C., Eng, Jimmy, Goodlett, David R., Aebersold, Ruedi, Miller, Samuel I.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2003 Mar 01. 100(5), 2771-2776.

Access URL: https://www.jstor.org/stable/3139603

Quantitative iTRAQ-based secretome analysis reveals species-specific and temporal shifts in carbon utilization strategies among manganese(II)-oxidizing Ascomycete fungi

Authors: Zeiner, Carolyn A., Purvine, Samuel O., Zink, Erika M., Paša-Tolić, Ljiljana, Chaput, Dominique L., Wu, Si, Santelli, Cara M., Hansel, Colleen M.

Source: In Fungal Genetics and Biology September 2017 106:61-75

Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation

Authors: Guo, Jian, Wilken, Susanne, Jimenez, Valeria, Choi, Chang Jae, Ansong, Charles, Dannebaum, Richard, Sudek, Lisa, Milner, David S., Bachy, Charles, Reistetter, Emily Nahas, Elrod, Virginia A., Klimov, Denis, Purvine, Samuel O., Wei, Chia-Lin, Kunde-Ramamoorthy, Govindarajan, Richards, Thomas A., Goodenough, Ursula, Smith, Richard D., Callister, Stephen J., Worden, Alexandra Z.

Source: Nature microbiology. 3(7):781-790

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100130018620.0x000001&indx=1&recIds=ETOCvdc_100130018620.0x000001

Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry

Authors: Burnum-Johnson, Kristin E. ^‡, Nie, Song ^‡, Casey, Cameron P. ^‡, Monroe, Matthew E. ^‡, Orton, Daniel J. ^‡, Ibrahim, Yehia M. ^‡, Gritsenko, Marina A. ^‡, Clauss, Therese R.W. ^‡, Shukla, Anil K. ^‡, Moore, Ronald J. ^‡, Purvine, Samuel O. ^‡, Shi, Tujin ^‡, Qian, Weijun ^‡, Liu, Tao ^‡, Baker, Erin S. ^{‡, §}, Smith, Richard D. ^{‡, §}

Source: In Molecular & Cellular Proteomics December 2016 15(12):3694-3705

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism

Authors: Tisoncik-Go, Jennifer, Gasper, David J., Kyle, Jennifer E., Eisfeld, Amie J., Selinger, Christian, Hatta, Masato, Morrison, Juliet, Korth, Marcus J., Zink, Erika M., Kim, Young-Mo, Schepmoes, Athena A., Nicora, Carrie D., Purvine, Samuel O., Weitz, Karl K., Peng, Xinxia, Green, Richard R., Tilton, Susan C., Webb-Robertson, Bobbie-Jo, Waters, Katrina M., Metz, Thomas O., Smith, Richard D., Kawaoka, Yoshihiro, Suresh, M., Josset, Laurence, Katze, Michael G.

Source: In Cell Host & Microbe 10 February 2016 19(2):254-266