SAILoR: Structure-Aware Inference of Logic Rules.

Authors: Pušnik, Žiga¹ (AUTHOR) ziga.pusnik@fri.uni-lj.si, Mraz, Miha¹ (AUTHOR), Zimic, Nikolaj¹ (AUTHOR), Moškon, Miha¹ (AUTHOR)

Source: PLoS ONE. 6/11/2024, Vol. 19 Issue 6, p1-29. 29p.

Subject Terms: *BOOLEAN networks, *GENE regulatory networks, *INFERENCE (Logic), *DROSOPHILA melanogaster, *SAILORS, *BIOLOGICAL networks, *LOGIC

COVID-19 and cholesterol biosynthesis: Towards innovative decision support systems

Authors: Kočar, Eva ¹, Katz, Sonja ^{2, 3, 6}, Pušnik, Žiga ^{4, 6}, Bogovič, Petra ⁵, Turel, Gabriele ⁵, Skubic, Cene ¹, Režen, Tadeja ¹, Strle, Franc ⁵, Martins dos Santos, Vitor A.P. ^{2, 3}, Mraz, Miha ⁴, Moškon, Miha ^{4, ∗}, Rozman, Damjana ^{1, 7, ∗∗}

Source: In iScience 20 October 2023 26(10)

A computational design of a programmable biological processor

Authors: Moškon, Miha, Pušnik, Žiga, Stanovnik, Lidija, Zimic, Nikolaj, Mraz, Miha

Source: In BioSystems November 2022 221

Review and assessment of Boolean approaches for inference of gene regulatory networks

Authors: Pušnik, Žiga ^⁎, Mraz, Miha, Zimic, Nikolaj, Moškon, Miha

Source: In Heliyon August 2022 8(8)

An integrative approach to neighbourhood sustainability assessments using publicly available traffic data

Authors: Verovšek, Špela, Juvančič, Matevž, Petrovčič, Simon, Zupančič, Tadeja, Svetina, Matija, Janež, Miha, Pušnik, Žiga, Velikajne, Nina, Moškon, Miha

Source: In Computers, Environment and Urban Systems July 2022 95

Field-programmable biological circuits and configurable (bio)logic blocks for distributed biological computing

Authors: Moškon, Miha, Pušnik, Žiga, Zimic, Nikolaj, Mraz, Miha

Source: In Computers in Biology and Medicine January 2021 128

Correction: SAILoR: Structure-aware inference of logic rules.

Authors: Pušnik, Žiga (AUTHOR), Mraz, Miha (AUTHOR), Zimic, Nikolaj (AUTHOR), Moškon, Miha (AUTHOR)

Source: PLoS ONE. 3/5/2025, Vol. 20 Issue 3, p1-1. 1p.

Subject Terms: *INFERENCE (Logic), *SAILORS, *EQUATIONS

Computational design of synchronous sequential structures in biological systems

Authors: Magdevska, Lidija, Pušnik, Žiga, Mraz, Miha, Zimic, Nikolaj, Moškon, Miha

Source: In Journal of Computational Science January 2017 18:24-31

Integrative protocol for quantifying cholesterol-related sterols in human serum samples and building decision support systems

Authors: Kočar, Eva ^{1, 6, 7}, Katz, Sonja ^{2, 3, 6, 7}, Pušnik, Žiga ⁴, Skubic, Cene ¹, Režen, Tadeja ¹, Martins dos Santos, Vitor A.P. ^{3, 5}, Mraz, Miha ⁴, Moškon, Miha ^{4, ∗}, Rozman, Damjana ^{1, 8, ∗∗}

Source: In STAR Protocols 20 September 2024 5(3)

Integracija strukturnih omejitev pri izpeljavi genesko regulatornih omrežij. (Slovenian)

Authors: Pušnik, Žiga, Moškon, Miha

Source: Uporabna Informatika; Jan-Mar2021, Vol. 29, p25-29, 5p

Correction to: Computational analysis of viable parameter regions in models of synthetic biological systems.

Authors: Pušnik, Žiga¹ (AUTHOR), Mraz, Miha¹ (AUTHOR), Zimic, Nikolaj¹ (AUTHOR), Moškon, Miha¹ (AUTHOR) miha.moskon@fri.uni-lj.si

Source: Journal of Biological Engineering. 11/11/2019, Vol. 13 Issue 1, pN.PAG-N.PAG. 1p.

Subject Terms: *BIOLOGICAL systems, *BIOLOGICAL models, *SYNTHETIC biology

Computational analysis of viable parameter regions in models of synthetic biological systems.

Authors: Pušnik, žiga¹ (AUTHOR), Mraz, Miha¹ (AUTHOR), Zimic, Nikolaj¹ (AUTHOR), Moškon, Miha¹ (AUTHOR) miha.moskon@fri.uni-lj.si

Source: Journal of Biological Engineering. 9/18/2019, Vol. 13 Issue 1, pN.PAG-N.PAG. 1p.

Subject Terms: *GENE regulatory networks, *BIOLOGICAL systems, *BIOLOGICAL models, *COST functions, *SYNTHETIC genes