Causes of heterozygosity excess: The case of Mexican populations of Populus tremuloides

Authors: Hernández-Velasco, Javier ^{a, b}, Hernández-Díaz, José Ciro ^c, Simental-Rodríguez, Sergio Leonel ^a, Jaramillo-Correa, Juan P. ^d, Gernandt, David S. ^e, Vargas-Hernández, José Jesús ^f, Porth, Ilga ^g, Goessen, Roos ^g, González-Elizondo, M. Socorro ^h, Fladung, Matthias ⁱ, Sáenz-Romero, Cuauhtémoc ^j, Martínez-Ávalos, José Guadalupe ^k, Carrillo-Parra, Artemio ^c, Mendoza-Maya, Eduardo ^a, Blanco-García, Arnulfo ^l, Wehenkel, Christian ^{c, ⁎}

Source: In Plant Diversity December 2024

Chromosome‐scale genome assembly and insights into the metabolome and gene regulation of leaf color transition in an important oak species, Quercus dentata

Authors: Wang, Wen‐Bo, He, Xiang‐Feng, Yan, Xue‐Mei, Ma, Bo, Lu, Cun‐Fu, Wu, Jing, Zheng, Yi, Wang, Wen‐He, Xue, Wen‐Bo, Tian, Xue-Chan, Guo, Jing-Fang, El‐Kassaby, Yousry A., Porth, Ilga, Leng, Ping‐Sheng, Hu, Zeng‐Hui, Mao, Jian‐Feng

Source: New phytologist. 238(5):2016-2032

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100183675017.0x000001&indx=1&recIds=ETOCvdc_100183675017.0x000001

The application gap: Genomics for biodiversity and ecosystem service management

Authors: Heuertz, Myriam, Carvalho, Silvia B., Galindo, Juan, Rinkevich, Baruch, Robakowski, Piotr, Aavik, Tsipe, Altinok, Ilhan, Barth, Julia M.I., Cotrim, Helena, Goessen, Roos, González-Martínez, Santiago C., Grebenc, Tine, Hoban, Sean, Kopatz, Alexander, McMahon, Barry J., Porth, Ilga, Raeymaekers, Joost A.M., Träger, Sabrina, Valdecantos, Alejandro, Vella, Adriana, Vernesi, Cristiano, Garnier-Géré, Pauline

Source: In Biological Conservation February 2023 278

Exon disruptive variants in Populus trichocarpa associated with wood properties exhibit distinct gene expression patterns.

Authors: Piot, Anthony, El‐Kassaby, Yousry A., Porth, Ilga

Source: Plant Genome; Mar2025, Vol. 18 Issue 1, p1-20, 20p

Coping with environmental constraints: Geographically divergent adaptive evolution and germination plasticity in the transcontinental Populus tremuloides

Authors: Goessen, Roos, Isabel, Nathalie, Wehenkel, Christian, Pavy, Nathalie, Tischenko, Lisa, Touchette, Lyne, Giguère, Isabelle, Gros‐Louis, Marie‐Claude, Laroche, Jérôme, Boyle, Brian, Soolanayakanahally, Raju, Mock, Karen, Hernández‐Velasco, Javier, Simental‐Rodriguez, Sergio Leonel, Bousquet, Jean, Porth, Ilga M.

Source: Plants, People, Planet. 4(6):638-654

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100163334648.0x000001&indx=1&recIds=ETOCvdc_100163334648.0x000001

SubPhaser: a robust allopolyploid subgenome phasing method based on subgenome‐specific k‐mers

Authors: Jia, Kai‐Hua, Wang, Zhao‐Xuan, Wang, Longxin, Li, Guang‐Yuan, Zhang, Wei, Wang, Xiao‐Ling, Xu, Fang‐Ji, Jiao, Si‐Qian, Zhou, Shan‐Shan, Liu, Hui, Ma, Yongpeng, Bi, Guiqi, Zhao, Wei, El‐Kassaby, Yousry A., Porth, Ilga, Li, Guowei, Zhang, Ren‐Gang, Mao, Jian‐Feng

Source: New phytologist. 235(2):801-809

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100154071004.0x000001&indx=1&recIds=ETOCvdc_100154071004.0x000001

Genome‐scale phylogeography resolves the native population structure of the Asian longhorned beetle, Anoplophora glabripennis (Motschulsky)

Authors: Cui, Mingming, Wu, Yunke, Javal, Marion, Giguère, Isabelle, Roux, Géraldine, Andres, Jose A., Keena, Melody, Shi, Juan, Wang, Baode, Braswell, Evan, Pfister, Scott E., Hamelin, Richard, Roe, Amanda, Porth, Ilga

Source: Evolutionary applications. 15(6):934-953

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100157639663.0x000001&indx=1&recIds=ETOCvdc_100157639663.0x000001

UV-B and UV-C radiation trigger both common and distinctive signal perceptions and transmissions in Pinus tabuliformis Carr.

Authors: Xu, Jie, Luo, Hang, Zhou, Shan-Shan, Jiao, Si-Qian, Jia, Kai-Hua, Nie, Shuai, Liu, Hui, Zhao, Wei, Wang, Xiao-Ru, El-Kassaby, Yousry A, Porth, Ilga, Mao, Jian-Feng

Source: Tree physiology. 42(8):1587-1600

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100157541403.0x000001&indx=1&recIds=ETOCvdc_100157541403.0x000001

Integration of Mitoflash and Time‐Series Transcriptomics Facilitates Energy Dynamics Tracking and Substrate Supply Analysis of Floral Thermogenesis in Lotus.

Authors: Yu, Miao, Wang, Siqin, Gu, Ge, Shi, Tian‐Le, Zhang, Jin, Jia, Yaping, Ma, Qi, Porth, Ilga, Mao, Jian‐Feng, Wang, Ruohan

Source: Plant, Cell & Environment; Jan2025, Vol. 48 Issue 1, p893-906, 14p

Subject Terms: ENERGY metabolism, PLANT metabolism, EAST Indian lotus, CELL metabolism, BIOCHEMICAL substrates

Tracking the North American Asian Longhorned Beetle Invasion With Genomics.

Authors: Cui, Mingming, Roe, Amanda D., Boyle, Brian, Keena, Melody, Wu, Yunke, Braswell, W. Evan, Smith, Michael T., Gasman, Ben, Shi, Juan, Javal, Marion, Roux, Geraldine, Turgeon, Jean J., Hamelin, Richard, Porth, Ilga

Source: Evolutionary Applications; Nov2024, Vol. 17 Issue 11, p1-17, 17p

Subject Terms: CERAMBYCIDAE, HISTORY of biology, SINGLE nucleotide polymorphisms, BIOLOGICAL invasions, BIOSURVEILLANCE

Functional and morphological evolution in gymnosperms: A portrait of implicated gene families

Authors: De La Torre, Amanda R., Piot, Anthony, Liu, Bobin, Wilhite, Benjamin, Weiss, Matthew, Porth, Ilga

Source: Evolutionary applications. 13(1):210-227

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100099942185.0x000001&indx=1&recIds=ETOCvdc_100099942185.0x000001

Genomic selection of juvenile height across a single-generational gap in Douglas-fir

Authors: Thistlethwaite, Frances, Ratcliffe, Blaise, Klápště, Jaroslav, Porth, Ilga, Chen, Charles, Stoehr, Michael, El-Kassaby, Yousry

Source: Heredity. 122(6):848-863

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100138186442.0x000001&indx=1&recIds=ETOCvdc_100138186442.0x000001

Gene copy number variations involved in balsam poplar (Populus balsamifera L.) adaptive variations

Authors: Prunier, Julien, Giguère, Isabelle, Ryan, Natalie, Guy, Robert, Soolanayakanahally, Raju, Isabel, Nathalie, MacKay, John, Porth, Ilga

Source: Molecular ecology. 28(6):1476-1490

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100090619797.0x000001&indx=1&recIds=ETOCvdc_100090619797.0x000001

In-depth transcriptome characterization uncovers distinct gene family expansions for Cupressus gigantea important to this long-lived species' adaptability to environmental cues

Authors: Zhou, Shan-Shan, Xing, Zhen, Liu, Hui, Hu, Xian-Ge, Gao, Qiong, Xu, Jie, Jiao, Si-Qian, Jia, Kai-Hua, Jin, Yu, Zhao, Wei, Porth, Ilga, El-Kassaby, Yousry, Mao, Jian-Feng

Source: BMC genomics. 20(1):1-14

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100186522677.0x000001&indx=1&recIds=ETOCvdc_100186522677.0x000001

Genome Scanning for Interspecific Differentiation Between Two Closely Related Oak Species [Quercus robur L. and Q. petraea (Matt.) Liebl.].

Authors: Scotti-Saintagne, Caroline, Mariette, Stéphanie, Porth, Ilga

Source: Genetics; November 2004, Vol. 168 Issue 3, p1615-1626, 12p

Oak genomics for nature-based solutions: shaping future forests and resilient landscapes in Canada.

Authors: Tischenko, Lisa, Williams, Martin, DeMerchant, Ian, Sambaraju, Kishan, Zacharias, Melanie, Soolanayakanahally, Raju, Otis-Prudhomme, Guillaume, Isabel, Nathalie, Porth, Ilga

Source: Tree Genetics & Genomes; Jun2024, Vol. 20 Issue 3, p1-28, 28p

Subject Terms: URBAN forestry, URBAN ecology, OAK, GENOMICS, FOREST management, GERMPLASM, LANDSCAPE assessment

Geographic Terms: CANADA

The complete chloroplast genome sequence annotation for Malania oleifera, a critically endangered and important bioresource tree

Authors: Liu, Si-Si, Hu, Yi-Heng, Maghuly, Fatemeh, Porth, Ilga Mercedes, Mao, Jian-Feng

Source: Conservation genetics resources. 11(3):271-274

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100128800784.0x000001&indx=1&recIds=ETOCvdc_100128800784.0x000001

Localization of gene expression, tissue specificity of Populus xylosyltransferase genes by isolation and functional characterization of their promoters

Authors: Porth, Ilga, Maghuly, Fatemeh, El-Kassaby, Yousry A., Mansfield, Shawn

Source: PLANT CELL TISSUE AND ORGAN CULTURE. 134(3):503-508

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100127727569.0x000001&indx=1&recIds=ETOCvdc_100127727569.0x000001

Biosurveillance of forest insects: part II—adoption of genomic tools by end user communities and barriers to integration

Authors: Bilodeau, Pierre, Roe, Amanda D., Bilodeau, Guillaume, Blackburn, Gwylim S., Cui, Mingming, Cusson, Michel, Doucet, Daniel, Griess, Verena C., Lafond, Valentine M. A., Nilausen, Chelsea, Paradis, Gregory, Porth, Ilga, Prunier, Julien, Srivastava, Vivek, Stewart, Don, Torson, Alex S., Tremblay, Emilie, Uzunovic, Adnan, Yemshanov, Denys, Hamelin, Richard C.

Source: Journal of pest science. 92(1):71-82

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100119724642.0x000001&indx=1&recIds=ETOCvdc_100119724642.0x000001

Biosurveillance of forest insects: part I—integration and application of genomic tools to the surveillance of non-native forest insects

Authors: Roe, Amanda D., Torson, Alex S., Bilodeau, Guillaume, Bilodeau, Pierre, Blackburn, Gwylim S., Cui, Mingming, Cusson, Michel, Doucet, Daniel, Griess, Verena C., Lafond, Valentine, Paradis, Gregory, Porth, Ilga, Prunier, Julien, Srivastava, Vivek, Tremblay, Emilie, Uzunovic, Adnan, Yemshanov, Denys, Hamelin, Richard C.

Source: Journal of pest science. 92(1):51-70

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100118575156.0x000001&indx=1&recIds=ETOCvdc_100118575156.0x000001