Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages

Authors: Dana Trunova, Natalia Borowska-Zuchowska, Serhii Mykhailyk, Kai Xia, Yuanbin Zhu, Ruben Sancho, Magdalena Rojek-Jelonek, Sònia Garcia, Kai Wang, Pilar Catalan, Ales Kovarik, Robert Hasterok, Bozena Kolano

Source: BMC Plant Biology, Vol 24, Iss 1, Pp 1-14 (2024)

Subject Terms: rDNA loci, Brachypodium hybridum, 5S rDNA NTS, nrITS, 35S rDNA IGS, FISH, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/f82c5385c8544f25aa533ee5585ab2ed

Post-COVID-19 syndrome. SARS-CoV-2 RNA detection in plasma, stool, and urine in patients with persistent symptoms after COVID-19

Authors: Francisco Tejerina, Pilar Catalan, Cristina Rodriguez-Grande, Javier Adan, Carmen Rodriguez-Gonzalez, Patricia Muñoz, Teresa Aldamiz, Cristina Diez, Leire Perez, Chiara Fanciulli, Dario Garcia de Viedma, Gregorio Marañon Microbiology ID COVID 19 Study Group

Source: BMC Infectious Diseases, Vol 22, Iss 1, Pp 1-8 (2022)

Subject Terms: Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2334

Access URL: https://doaj.org/article/e7e5bfbe7c7e43a09d7052cd2c9f2155

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

Authors: Sean P. Gordon, Bruno Contreras-Moreira, Joshua J. Levy, Armin Djamei, Angelika Czedik-Eysenberg, Virginia S. Tartaglio, Adam Session, Joel Martin, Amy Cartwright, Andrew Katz, Vasanth R. Singan, Eugene Goltsman, Kerrie Barry, Vinh Ha Dinh-Thi, Boulos Chalhoub, Antonio Diaz-Perez, Ruben Sancho, Joanna Lusinska, Elzbieta Wolny, Candida Nibau, John H. Doonan, Luis A. J. Mur, Chris Plott, Jerry Jenkins, Samuel P. Hazen, Scott J. Lee, Shengqiang Shu, David Goodstein, Daniel Rokhsar, Jeremy Schmutz, Robert Hasterok, Pilar Catalan, John P. Vogel

Source: Nature Communications, Vol 11, Iss 1, Pp 1-16 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/cc64c72bac854d8fbcca53abca35d3ac

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

Authors: Sean P. Gordon, Bruno Contreras-Moreira, Daniel P. Woods, David L. Des Marais, Diane Burgess, Shengqiang Shu, Christoph Stritt, Anne C. Roulin, Wendy Schackwitz, Ludmila Tyler, Joel Martin, Anna Lipzen, Niklas Dochy, Jeremy Phillips, Kerrie Barry, Koen Geuten, Hikmet Budak, Thomas E. Juenger, Richard Amasino, Ana L. Caicedo, David Goodstein, Patrick Davidson, Luis A. J. Mur, Melania Figueroa, Michael Freeling, Pilar Catalan, John P. Vogel

Source: Nature Communications, Vol 8, Iss 1, Pp 1-13 (2017)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/2fe896100a29439d86bdde8e91d1a8f2

Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei.

Authors: Vinh Ha Dinh Thi, Olivier Coriton, Isabelle Le Clainche, Dominique Arnaud, Sean P Gordon, Gabriella Linc, Pilar Catalan, Robert Hasterok, John P Vogel, Joseph Jahier, Boulos Chalhoub

Source: PLoS ONE, Vol 11, Iss 12, p e0167171 (2016)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5147888?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/e6623d3f8ce745dda5a2ac1a5cbb9105

A Prospective Monitoring Study of Cytomegalovirus Infection in Non-Immunosuppressed Critical Heart Surgery Patients.

Authors: Paula Lopez Roa, Maria Jesus Perez-Granda, Patricia Munoz, Pilar Catalan, Roberto Alonso, Eduardo Sanchez-Perez, Emma Novoa, Emilio Bouza

Source: PLoS ONE, Vol 10, Iss 6, p e0129447 (2015)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4466502?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/a3f8da236a6e462593fc1349a7c6141b

Occult COVID-19 in an immunosuppressed patient with migratory pulmonary infiltrates

Authors: Cristina Veintimilla, Ana Álvarez-Uría Miyares, Sergio Buenestado-Serrano, Rosalía Palomino-Cabrera, Ignacio Gomez Centurion, Pilar Catalán, Patricia Muñoz, Laura Pérez-Lago, Darío García de Viedma

Source: International Journal of Infectious Diseases, Vol 151, Iss , Pp 107296- (2025)

Subject Terms: Occult COVID-19, Diagnosis, Immunosuppressed hosts, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1201971224003722; https://doaj.org/toc/1201-9712

Access URL: https://doaj.org/article/66c008de093a451cb9e54e99f5d57fa6

A solution to achieve sequencing from SARS-CoV-2 specimens with low viral loads: concatenation of reads from independent reactions

Authors: Alba Cerro-Monje, Sergio Buenestado-Serrano, Rosalía Palomino-Cabrera, Andrea Molero-Salinas, Marta Herranz, Roberto Alonso, Pilar Catalán, Patricia Muñoz, Darío García de Viedma, Laura Pérez-Lago, On behalf of the Gregorio Marañón Microbiology-ID COVID 19 Study Group

Source: Virology Journal, Vol 21, Iss 1, Pp 1-8 (2024)

Subject Terms: SARS-CoV-2, WGS, Low viral load, Concatenation, Genomics, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://doaj.org/toc/1743-422X

Access URL: https://doaj.org/article/c991d570b50746199a46c5e2fee573dc

Chronic Systemic SARS-CoV-2 Infection Without Respiratory Involvement in an Immunocompromised Patient

Authors: Francisco Tejerina, Daniel Peñas-Utrilla, Marta Herranz, Pilar Catalán, Mercedes Marín, Lara Mesones, José Manuel García-Domínguez, Beatriz Merino, Leire Pérez, Chiara Fanciulli, Patricia Muñoz, Carmen Rodríguez-Gonzalez, Cristina Diez, Teresa Aldámiz, Andrea Molero-Salinas, Laura Pérez-Lago, Darío García de Viedma

Source: Viruses, Vol 17, Iss 2, p 147 (2025)

Subject Terms: persistent COVID-19, immunocompromised, systemic infection, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/17/2/147; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/be046bc9ad2f4e2ab077edfccc3462e7

Expansions and contractions of repetitive DNA elements reveal contrasting evolutionary responses to the polyploid genome shock hypothesis in Brachypodium model grasses

Authors: María Ángeles Decena, Rubén Sancho, Luis A. Inda, Ernesto Pérez-Collazos, Pilar Catalán

Source: Frontiers in Plant Science, Vol 15 (2024)

Subject Terms: Brachypodium, evolution, genome size diversification, polyploid genome shock, repeatome, transposable elements, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2024.1419255/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/89a6f1c299ab4a0da31956f80f8ec494

Systematic influenza screening in cardiac intensive care units during the influenza season: A prospective study in Spain

Authors: Alicia Galar, Miriam Juárez, Iago Sousa-Casasnovas, Pilar Catalán, Maricela Valerio, Pablo Antunez-Muiños, Gema Barbeito-Castiñeiras, Silvia Blanco-Alonso, María Dolores Folgueira, José María García-Acuña, Antonio Lalueza, Fernando Lázaro-Perona, Esteban López de Sá, Lorena Martín, Elena Muñez, Francisca Portero, Antonio Ramos-Martínez, María Pilar Romero-Gómez, Sandra Rosillo, Francisco Fernández-Avilés, Manuel Martínez-Sellés, Emilio Bouza, Patricia Muñoz

Source: International Journal of Infectious Diseases, Vol 136, Iss , Pp 37-42 (2023)

Subject Terms: Influenza, Systematic screening, Acute cardiac events, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1201971223007129; https://doaj.org/toc/1201-9712

Access URL: https://doaj.org/article/ff71d18977f04c0ca5bafd68ab257239

Sedentary behaviour in college students and its influence on heart rate and mental health

Authors: Javier Magallón, Pilar Catalán

Source: European Journal of Human Movement, Vol 52 (2024)

Subject Terms: sedentary behavior, physical activity, anxiety, heart rate, stress, sitting hours, Sports, GV557-1198.995, Sports medicine, RC1200-1245

File Description: electronic resource

Relation: http://eurjhm.com/index.php/eurjhm/article/view/842; https://doaj.org/toc/2386-4095

Access URL: https://doaj.org/article/11f62b4575aa4cb4bdeb866ae77d2fe7

A mutation responsible for impaired detection by the Xpert SARS-CoV-2 assay independently emerged in different lineages during the SARS-CoV-2 pandemic

Authors: Daniel Peñas-Utrilla, Amadeo Sanz, Pilar Catalán, Cristina Veintimilla, Luis Alcalá, Roberto Alonso, Patricia Muñoz, Laura Pérez-Lago, Darío García de Viedma, on behalf of the Gregorio Marañón Microbiology-ID COVID 19 Study Group

Source: BMC Microbiology, Vol 23, Iss 1, Pp 1-6 (2023)

Subject Terms: COVID-19, Cepheid Xpert, C29200T, Detection impairment, N gene, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2180

Access URL: https://doaj.org/article/9848c7397a7e47378170ff7ed5b80e0b

Systematic genomic analysis of SARS-CoV-2 co-infections throughout the pandemic and segregation of the strains involved

Authors: Daniel Peñas-Utrilla, Laura Pérez-Lago, Andrea Molero-Salinas, Agustín Estévez, Amadeo Sanz, Marta Herranz, Carolina Martínez-Laperche, Cristina Andrés-Zayas, Cristina Veintimilla, Pilar Catalán, Roberto Alonso, Patricia Muñoz, Darío García de Viedma, on behalf of the Gregorio Marañón Microbiology-ID COVID 19 Study Group

Source: Genome Medicine, Vol 15, Iss 1, Pp 1-16 (2023)

Subject Terms: SARS-CoV-2, Co-infections, WGS, Segregation, Medicine, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1756-994X

Access URL: https://doaj.org/article/aefa5b88d4a74137b06997a4fe89eb1a

Accelerating SARS-CoV-2 genomic surveillance in a routine clinical setting with nanopore sequencing

Authors: Sergio Buenestado-Serrano, Marta Herranz, Álvaro Otero-Sobrino, Andrea Molero-Salinas, Cristina Rodríguez-Grande, Amadeo Sanz-Pérez, María José Durán Galván, Pilar Catalán, Roberto Alonso, Patricia Muñoz, Laura Pérez-Lago, Darío García de Viedma

Source: International Journal of Medical Microbiology, Vol 314, Iss , Pp 151599- (2024)

Subject Terms: SARS-CoV-2, Surveillance, Nosocomial outbreaks, WGS, Nanopore, Fast response, Microbiology, QR1-502, Other systems of medicine, RZ201-999

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1438422124000031; https://doaj.org/toc/1438-4221

Access URL: https://doaj.org/article/aa67d389bb494b4a93a283b5e69755b4

Neutralizing antibody levels detected early after mRNA-based vaccination do not predict by themselves subsequent breakthrough infections of SARS-CoV-2

Authors: Roberto Alonso, Sergio Gil-Manso, Pilar Catalán, Ignacio Sánchez-Arcilla, Marco Marzola, Rafael Correa-Rocha, Patricia Muñoz, Marjorie Pion, the Gregorio Marañón Microbiology-ID COVID-19 Study Group

Source: Frontiers in Immunology, Vol 15 (2024)

Subject Terms: SARS-CoV-2, anti-RBD IgG, neutralizing antibodies, breakthrough infection, humoral immunity, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2024.1341313/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/01e70eeca9024b2490ec99ce351d43ed

Early SARS-CoV-2 Reinfections Involving the Same or Different Genomic Lineages, Spain

Authors: Cristina Rodríguez-Grande, Agustín Estévez, Rosalía Palomino-Cabrera, Andrea Molero-Salinas, Daniel Peñas-Utrilla, Marta Herranz, Amadeo Sanz-Pérez, Luis Alcalá, Cristina Veintimilla, Pilar Catalán, Carolina Martínez-Laperche, Roberto Alonso, Patricia Muñoz, Laura Pérez-Lago, Darío García de Viedma

Source: Emerging Infectious Diseases, Vol 29, Iss 6, Pp 1154-1161 (2023)

Subject Terms: COVID-19, SARS-CoV-2, respiratory infections, severe acute respiratory syndrome coronavirus 2, SARS, coronavirus disease, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/29/6/22-1696_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/9817982dda904375972ea45cdd94aeac

Alternative molecular and genomic strategies to provide a rapid response to alerts concerning the introduction of new emerging SARS-CoV-2 variants: the Omicron alert

Authors: Marta Herranz, Sergio Buenestado-Serrano, Javier Martín-Escolano, Andrea Molero-Salinas, Roberto Alonso, Pilar Catalán, Patricia Muñoz, Darío García de Viedma, Laura Pérez-Lago

Source: Microbiology Spectrum, Vol 11, Iss 5 (2023)

Subject Terms: SARS-CoV-2, Omicron, genomic strategies, molecular tools, VOC alert, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/ac989b62ad8b4d6698151231f3a42505

Systematic Genomic and Clinical Analysis of Severe Acute Respiratory Syndrome Coronavirus 2 Reinfections and Recurrences Involving the Same Strain

Authors: Cristina Rodríguez-Grande, Luis Alcalá, Agustín Estévez, Pedro J. Sola-Campoy, Sergio Buenestado-Serrano, Carolina Martínez-Laperche, Víctor Manuel de la Cueva, Roberto Alonso, Cristina Andrés-Zayas, Javier Adán-Jiménez, Carmen Losada, Carla Rico-Luna, Iñaki Comas, Fernando González-Candelas, Pilar Catalán, Patricia Muñoz, Laura Pérez-Lago, Darío García de Viedma

Source: Emerging Infectious Diseases, Vol 28, Iss 1, Pp 85-94 (2022)

Subject Terms: COVID-19, coronavirus disease, SARS-CoV-2, severe acute respiratory syndrome coronavirus 2, viruses, respiratory infections, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/28/1/21-1952_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/5c5be83b628f47819bc8c7041b1fc06e

Rapid Identification of Relevant Microbial Strains by Identifying Multiple Marker Single Nucleotide Polymorphisms via Amplicon Sequencing: Epidemic Monkeypox Virus as a Proof of Concept

Authors: Sergio Buenestado-Serrano, Marta Herranz, Rosalía Palomino-Cabrera, Cristina Rodríguez-Grande, Daniel Peñas-Utrilla, Andrea Molero-Salinas, Cristina Veintimilla, Pilar Catalán, Roberto Alonso, Patricia Muñoz, Laura Pérez-Lago, Darío García de Viedma

Source: Microbiology Spectrum, Vol 11, Iss 1 (2023)

Subject Terms: MPXV, monkeypox virus, nanopore, amplicons, sequencing, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/06baaa1def0f47fba36dd4374631d65b