Exposure to TNF antagonist therapies induces variations of the gut microbiota in an in vivo model using healthy mice

Authors: Gabay, Odile, Vicenty, Jonathan, Zack-Taylor, Autumn, Tiffany, Linda, Wunderlin, Grant, Smith, Dylan, Reyes-Munoz, Lismari, Edwards, Vivienne, Wu, Wells W., Phue, Je-Nie, Santana-Quintero, Luis, Lam, Phuc VinhNguyen, Clouse, Kathleen A.

Source: Joint bone spine. 87(2):175-178

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100099771688.0x000001&indx=1&recIds=ETOCvdc_100099771688.0x000001

Targeting specificity of APOBEC-based cytosine base editor in human iPSCs determined by whole genome sequencing

Authors: McGrath, Erica, Shin, Hyunsu, Zhang, Linyi, Phue, Je-Nie, Wu, Wells, Shen, Rong-Fong, Jang, Yoon-Young, Revollo, Javier, Ye, Zhaohui

Source: Nature communications. 10(1):1-9

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100191096991.0x000001&indx=1&recIds=ETOCvdc_100191096991.0x000001

Serologic Evidence of Ebolavirus Infection in a Population With No History of Outbreaks in the Democratic Republic of the Congo

Authors: Mulangu, Sabue, Alfonso, Vivian H., Hoff, Nicole A., Doshi, Reena H., Mulembakani, Prime, Kisalu, Neville K., Okitolonda-Wemakoy, Emile, Kebela, Benoit Ilunga, Marcus, Hadar, Shiloach, Joseph, Phue, Je-Nie, Wright, Linda L., Muyembe-Tamfum, Jean-Jacques, Sullivan, Nancy J., Rimoin, Anne W.

Source: The Journal of Infectious Diseases, 2018 Feb . 217(4), 529-537.

Access URL: https://www.jstor.org/stable/26494572

Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing

Authors: Wu, Wells, Phue, Je-Nie, Lee, Chun-Ting, Lin, Changyi, Xu, Lai, Wang, Rong, Zhang, Yaqin, Shen, Rong-Fong

Source: BMC genomics. 19(1):1-10

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165310649.0x000001&indx=1&recIds=ETOCvdc_100165310649.0x000001

Reducing acetate excretion from E. coli K-12 by over-expressing the small RNA SgrS

Authors: Negrete, Alejandro, Majdalani, Nadim, Phue, Je-Nie, Shiloach, Joseph

Source: In New BIOTECHNOLOGY 25 January 2013 30(2):269-273

Evaluating microarrays using a semiparametric approach: Application to the central carbon metabolism of Escherichia coli BL21 and JM109

Authors: Phue, Je-Nie, Kedem, Benjamin, Jaluria, Pratik, Shiloach, Joseph

Source: In Genomics 2007 89(2):300-305

Impact of dissolved oxygen concentration on acetate accumulation and physiology of E. coli BL21, evaluating transcription levels of key genes at different dissolved oxygen conditions

Authors: Phue, Je-Nie, Shiloach, Joseph

Source: In Metabolic Engineering 2005 7(5):353-363

Transcription levels of key metabolic genes are the cause for different glucose utilization pathways in E. coli B (BL21) and E. coli K (JM109)

Authors: Phue, Je-Nie, Shiloach, Joseph

Source: In Journal of Biotechnology 2004 109(1):21-30

SARS-CoV-2 B.1.1.7 (alpha) and B.1.351 (beta) variants induce pathogenic patterns in K18-hACE2 transgenic mice distinct from early strains.

Authors: Radvak, Peter, Kwon, Hyung-Joon, Kosikova, Martina, Ortega-Rodriguez, Uriel, Xiang, Ruoxuan, Phue, Je-Nie, Shen, Rong-Fong, Rozzelle, James, Kapoor, Neeraj, Rabara, Taylor, Fairman, Jeff, Xie, Hang

Source: Nature Communications; 11/12/2021, Vol. 12 Issue 1, p1-15, 15p

Subject Terms: SARS-CoV-2, TRANSGENIC mice, COVID-19, LABORATORY mice, CYTOKINES, REINFECTION

The role of Cra in regulating acetate excretion and osmotic tolerance in E. coli K-12 and E. coli B at high density growth

Authors: Lee Sang Jun, Trinh Loc B, Phue Je-Nie, Son Young-Jin, Shiloach Joseph

Source: Microbial Cell Factories, Vol 10, Iss 1, p 52 (2011)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.microbialcellfactories.com/content/10/1/52; https://doaj.org/toc/1475-2859

Access URL: https://doaj.org/article/9aa56b23c04a4687aefe49ea7eca2d92

Expression of the ace operon in Escherichia coli is triggered in response to growth rate-dependent flux-signal of ATP.

Authors: El-Mansi, Mansi^1,2 (AUTHOR) bioed.uk@gmail.com, Phue, Je-Nie³ (AUTHOR), Shiloach, Joseph³ (AUTHOR)

Source: FEMS Microbiology Letters. 1/15/2021, Vol. 368 Issue 2, p1-9. 9p.

Subject Terms: *OPERONS, *ESCHERICHIA coli, *PYRUVATE kinase, *GLUTAMINE synthetase, *ACETYLCOENZYME A, *ADENOSINE triphosphate, *PHENOTYPES, *PHOSPHORYLATION

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NGS Evaluation of Colorectal Cancer Reveals Interferon Gamma Dependent Expression of Immune Checkpoint Genes and Identification of Novel IFNγ Induced Genes.

Authors: Xu, Lai, Pelosof, Lorraine, Wang, Rong, McFarland, Hugh I., Wu, Wells W., Phue, Je-Nie, Lee, Chun-Ting, Shen, Rong-Fong, Juhl, Hartmut, Wu, Lei-Hong, Alterovitz, Wei-Lun, Petricon, Emanuel, Rosenberg, Amy S.

Source: Frontiers in Immunology; 3/19/2020, p1-14, 14p

Subject Terms: INTERFERON gamma, COLORECTAL cancer, STOMACH cancer, GENES, ESOPHAGEAL cancer, PROGRAMMED cell death 1 receptors, DENITRIFYING bacteria

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Glucose metabolism at high density growth of E. coli B and E. coli K: Differences in metabolic pathways are responsible for efficient glucose utilization in E. coli B as determined by microarrays and Northern blot analyses.

Authors: Phue, Je-Nie, Noronha, Santosh B., Hattacharyya, Ritabrata, Wolfe, Alan J., Shiloach, Joseph

Source: Biotechnology & Bioengineering; Jun2005, Vol. 90 Issue 7, p805-820, 16p

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An Optimized Purification Design for Extracting Active ADAMTS13 from Conditioned Media.

Authors: Jankowska, Katarzyna I., Katneni, Upendra, Lin, Brian C., Amarasinghe, Randilu, Phue, Je-Nie, Wu, Wells W., Hamasaki-Katagiri, Nobuko, Jankowski, Wojciech, Shen, Rong-Fong, Kimchi-Sarfaty, Chava

Source: Processes; Feb2022, Vol. 10 Issue 2, p322, 1p

Subject Terms: VON Willebrand factor, THROMBOTIC thrombocytopenic purpura, POST-translational modification, COVID-19, AFFINITY chromatography, METALLOPROTEINASES

Analyzing the Role of Gut Microbiota on the Onset of Autoimmune Diseases Using TNF ΔARE Murine Model.

Authors: Edwards, Vivienne, Smith, Dylan L., Meylan, Francoise, Tiffany, Linda, Poncet, Sarah, Wu, Wells W., Phue, Je-Nie, Santana-Quintero, Luis, Clouse, Kathleen A., Gabay, Odile

Source: Microorganisms; Jan2022, Vol. 10 Issue 1, p73-73, 1p

Subject Terms: GUT microbiome, INFLAMMATORY bowel diseases, AUTOIMMUNE diseases, FECES, FECAL microbiota transplantation, INFLAMMATORY mediators, INFECTIOUS disease transmission