Designing meaningful continuous representations of T cell receptor sequences with deep generative models

Authors: Allen Y. Leary, Darius Scott, Namita T. Gupta, Janelle C. Waite, Dimitris Skokos, Gurinder S. Atwal, Peter G. Hawkins

Source: Nature Communications, Vol 15, Iss 1, Pp 1-14 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/1820b41f4a474b529dd9e7094a5d49f9

Imaging response assessment for predicting outcomes after bioselection chemotherapy in larynx cancer: A secondary analysis of two prospective trials

Authors: Laila A. Gharzai, Julia Pakela, Elizabeth M. Jaworski, Issam El Naqa, Jennifer Shah, Peter G. Hawkins, Matthew E. Spector, Carol R. Bradford, Steven B. Chinn, Kelly Malloy, Robbi Kupfer, Andrew Shuman, Robert Morrison, Chaz L. Stucken, Andrew Rosko, Mark E. Prince, Keith Casper, Avraham Eisbruch, Gregory Wolf, Paul L. Swiecicki, Francis Worden, Michelle L. Mierzwa

Source: Clinical and Translational Radiation Oncology, Vol 33, Iss , Pp 30-36 (2022)

Subject Terms: Locally advanced laryngeal cancer, Bioselection imaging, Chemoradiation, Laryngectomy, Medical physics. Medical radiology. Nuclear medicine, R895-920, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2405630821001051; https://doaj.org/toc/2405-6308

Access URL: https://doaj.org/article/36489a02909c47fdb394460ab8d41d1e

Prediction of Radiation Esophagitis in Non–Small Cell Lung Cancer Using Clinical Factors, Dosimetric Parameters, and Pretreatment Cytokine Levels

Authors: Peter G. Hawkins, Philip S. Boonstra, Stephen T. Hobson, James A. Hayman, Randall K. Ten Haken, Martha M. Matuszak, Paul Stanton, Gregory P. Kalemkerian, Theodore S. Lawrence, Matthew J. Schipper, Feng-Ming (Spring) Kong, Shruti Jolly

Source: Translational Oncology, Vol 11, Iss 1, Pp 102-108 (2018)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1936523317303534; https://doaj.org/toc/1936-5233; https://doaj.org/toc/1944-7124

Access URL: https://doaj.org/article/807aa9f845534e57980033eb1a73c236

Predictive Values of MRI and PET Derived Quantitative Parameters for Patterns of Failure in Both p16+ and p16– High Risk Head and Neck Cancer

Authors: Yue Cao, Madhava Aryal, Pin Li, Choonik Lee, Matthew Schipper, Peter G. Hawkins, Christina Chapman, Dawn Owen, Aleksandar F. Dragovic, Paul Swiecicki, Keith Casper, Francis Worden, Theodore S. Lawrence, Avraham Eisbruch, Michelle Mierzwa

Source: Frontiers in Oncology, Vol 9 (2019)

Subject Terms: MRI, head and neck cancer, radiation therapy, imaging biomarker, adaptive therapy, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fonc.2019.01118/full; https://doaj.org/toc/2234-943X

Access URL: https://doaj.org/article/d537189ae9b74d1fbaf1e24cebc31b02

PROPERMAB: an integrative framework for in silico prediction of antibody developability using machine learning

Authors: Bian Li, Shukun Luo, Wenhua Wang, Jiahui Xu, Dingjiang Liu, Mohammed Shameem, John Mattila, Matthew C. Franklin, Peter G. Hawkins, Gurinder S. Atwal

Source: mAbs, Vol 17, Iss 1 (2025)

Subject Terms: Antibody developability, feature engineering, in silico prediction, machine learning, Therapeutics. Pharmacology, RM1-950, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://doaj.org/toc/1942-0862; https://doaj.org/toc/1942-0870

Access URL: https://doaj.org/article/103414e7cf484bcbbbd0572366e912b2

Bidirectional transcription directs both transcriptional gene activation and suppression in human cells.

Authors: Kevin V Morris, Sharon Santoso, Anne-Marie Turner, Chiara Pastori, Peter G Hawkins

Source: PLoS Genetics, Vol 4, Iss 11, p e1000258 (2008)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC2576438?pdf=render; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/dab3b3732a814bb6a1b009107430c942