HBV-associated hepatocellular carcinomas inhibit antitumor CD8+ T cell via the long noncoding RNA HDAC2-AS2

Authors: Yanan Gao, Zhenxing Zhang, Xuetao Huang, Maojun You, Chengzhi Du, Nan Li, Yajing Hao, Kang Wang, Xiang Ding, Fuquan Yang, Shu-qun Cheng, Jianjun Luo, Runsheng Chen, Pengyuan Yang

Source: Nature Communications, Vol 16, Iss 1, Pp 1-18 (2025)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/ae754a67e39f45b1b346f289125b743f

USP26 as a hepatitis B virus-induced deubiquitinase primes hepatocellular carcinogenesis by epigenetic remodeling

Authors: Mengru Ma, Lian Yi, Yifei Pei, Qimin Zhang, Chao Tong, Manyu Zhao, Yuanhong Chen, Jinghan Zhu, Wanguang Zhang, Fan Yao, Pengyuan Yang, Peijing Zhang

Source: Nature Communications, Vol 15, Iss 1, Pp 1-18 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/d886e8719a9b478c86037c60372a1bfd

Transgelin promotes lung cancer progression via activation of cancer-associated fibroblasts with enhanced IL-6 release

Authors: Chanjun Sun, Kaishang Zhang, Chen Ni, Jiajia Wan, Xixi Duan, Xiaohan Lou, Xiaohan Yao, Xiangnan Li, Ming Wang, Zhuoyu Gu, Pengyuan Yang, Zhenzhen Li, Zhihai Qin

Source: Oncogenesis, Vol 12, Iss 1, Pp 1-16 (2023)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/2157-9024

Access URL: https://doaj.org/article/d9e73c19e73b40b0b8e02961866591f7

pGlycoQuant with a deep residual network for quantitative glycoproteomics at intact glycopeptide level

Authors: Siyuan Kong, Pengyun Gong, Wen-Feng Zeng, Biyun Jiang, Xinhang Hou, Yang Zhang, Huanhuan Zhao, Mingqi Liu, Guoquan Yan, Xinwen Zhou, Xihua Qiao, Mengxi Wu, Pengyuan Yang, Chao Liu, Weiqian Cao

Source: Nature Communications, Vol 13, Iss 1, Pp 1-17 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/4e19c5bfaebf4b2caa4c34b276ad7c3e

Overexpressing HPGDS in adipose-derived mesenchymal stem cells reduces inflammatory state and improves wound healing in type 2 diabetic mice

Authors: Long Ouyang, Daojing Qiu, Xin Fu, Aiping Wu, Pengyuan Yang, Zhigang Yang, Qian Wang, Li Yan, Ran Xiao

Source: Stem Cell Research & Therapy, Vol 13, Iss 1, Pp 1-15 (2022)

Subject Terms: Hpgds, Diabetic wound, ADSC, Inflammation regulator, Healing, Medicine (General), R5-920, Biochemistry, QD415-436

File Description: electronic resource

Relation: https://doaj.org/toc/1757-6512

Access URL: https://doaj.org/article/17b31a76c8ca47d89896a4b8b570dadc

Multimodal Studies in Hepatitis B Virus Associated Hepatocellular Carcinoma

Authors: Runze Xie, Maojun You, Xin Wang, Shunda Du, Fu-Sheng Wang, Pengyuan Yang, Haijuan Wang

Source: ​​​​​​​​Infectious Diseases & Immunity, Vol 2, Iss 3, Pp 204-209 (2022)

Subject Terms: Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://journals.lww.com/10.1097/ID9.0000000000000052; https://doaj.org/toc/2693-8839

Access URL: https://doaj.org/article/f2558d6c8ce64ad8a4752437e5dbe0bf

Circulating proteomic panels for risk stratification of intracranial aneurysm and its rupture

Authors: Yueting Xiong, Yongtao Zheng, Yan Yan, Jun Yao, Hebin Liu, Fenglin Shen, Siyuan Kong, Shuang Yang, Guoquan Yan, Huanhuan Zhao, Xinwen Zhou, Jia Hu, Bin Zhou, Tao Jin, Huali Shen, Bing Leng, Pengyuan Yang, Xiaohui Liu

Source: EMBO Molecular Medicine, Vol 14, Iss 2, Pp 1-14 (2022)

Subject Terms: biomarker discovery, intracranial aneurysm, mass spectrometry, serum proteome profiling, Medicine (General), R5-920, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1757-4676; https://doaj.org/toc/1757-4684

Access URL: https://doaj.org/article/f042292c61d0428fad0e65913517f278

Study on a benchmark finite element model of a cable-stayed bridge based on ABAQUS and IM-HPO

Authors: Jie Liu, Pengyuan Yang, Qingkuan Liu, Hailong Wang, Jianqing Bu

Source: AIP Advances, Vol 13, Iss 3, Pp 035012-035012-13 (2023)

Subject Terms: Physics, QC1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2158-3226

Access URL: https://doaj.org/article/c699abbe74184c359e63ee1f930e3113

Anatomically resolved transcriptome and proteome landscapes reveal disease‐relevant molecular signatures and systematic changes in heart function of end‐stage dilated cardiomyopathy

Authors: Ling Lin, Shanshan Liu, Zhangwei Chen, Yan Xia, Juanjuan Xie, Mingqiang Fu, Danbo Lu, Yuan Wu, Huali Shen, Pengyuan Yang, Juying Qian

Source: View, Vol 4, Iss 1, Pp n/a-n/a (2023)

Subject Terms: dilated cardiomyopathy, heart chambers, proteome, serum biomarker panel, transcriptome, Biotechnology, TP248.13-248.65, Medical technology, R855-855.5

File Description: electronic resource

Relation: https://doaj.org/toc/2688-3988; https://doaj.org/toc/2688-268X

Access URL: https://doaj.org/article/bb075c6763e24b08a91d180b65e9b6c3

Particle size-dependent effects of silver nanoparticles on swim bladder damage in zebrafish larvae

Authors: Yongfei Gao, Pengyuan Yang, Jingxue Zhu

Source: Ecotoxicology and Environmental Safety, Vol 249, Iss , Pp 114363- (2023)

Subject Terms: Silver nanoparticle, Silver ion, Particle size, Deiodinase, Swim bladder inflation, Environmental pollution, TD172-193.5, Environmental sciences, GE1-350

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0147651322012039; https://doaj.org/toc/0147-6513

Access URL: https://doaj.org/article/6126803e8064480bb5f2c2189e2d6304

GproDIA enables data-independent acquisition glycoproteomics with comprehensive statistical control

Authors: Yi Yang, Guoquan Yan, Siyuan Kong, Mengxi Wu, Pengyuan Yang, Weiqian Cao, Liang Qiao

Source: Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/6dbee40a30b54804a854177e6a6906a1

RNA m6A methylation orchestrates cancer growth and metastasis via macrophage reprogramming

Authors: Huilong Yin, Xiang Zhang, Pengyuan Yang, Xiaofang Zhang, Yingran Peng, Da Li, Yanping Yu, Ye Wu, Yidi Wang, Jinbao Zhang, Xiaochen Ding, Xiangpeng Wang, Angang Yang, Rui Zhang

Source: Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/013f4347490a418eb0ba0440e7fbe53f

N 6-methyladenosine RNA modification suppresses antiviral innate sensing pathways via reshaping double-stranded RNA

Authors: Weinan Qiu, Qingyang Zhang, Rui Zhang, Yangxu Lu, Xin Wang, Huabin Tian, Ying Yang, Zijuan Gu, Yanan Gao, Xin Yang, Guanshen Cui, Baofa Sun, Yanan Peng, Hongyu Deng, Hua Peng, Angang Yang, Yun-Gui Yang, Pengyuan Yang

Source: Nature Communications, Vol 12, Iss 1, Pp 1-16 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/e3ca47ef6654412d86d5ab34d1d96bcf

3D landscape of Hepatitis B virus interactions with human chromatins

Authors: Bo Yang, Boyuan Li, Liyang Jia, Yongpeng Jiang, Xin Wang, Shaodong Jiang, Shunda Du, Xiong Ji, Pengyuan Yang

Source: Cell Discovery, Vol 6, Iss 1, Pp 1-12 (2020)

Subject Terms: Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/2056-5968

Access URL: https://doaj.org/article/a4313746a2774c649d5e8b8c35a618c9

SIRT5 is important for bacterial infection by regulating insulin secretion and glucose homeostasis

Authors: Cuiping Zhang, Ke Wang, Zuojian Hu, Lujie Yang, Bin Wei, Shan Li, Xue Qin, Pengyuan Yang, Hongxiu Yu

Source: Protein & Cell, Vol 11, Iss 11, Pp 846-851 (2020)

Subject Terms: Cytology, QH573-671, Animal biochemistry, QP501-801

File Description: electronic resource

Relation: https://doaj.org/toc/1674-800X; https://doaj.org/toc/1674-8018

Access URL: https://doaj.org/article/0c226b66c3c34976b9ba2ad7d86c8fc9

Revisit the signatures of γδ T cells in hepatocellular carcinoma

Authors: Yanan Gao, Maojun You, Pengyuan Yang

Source: Clinical and Translational Medicine, Vol 12, Iss 5, Pp n/a-n/a (2022)

Subject Terms: Medicine (General), R5-920

File Description: electronic resource

Relation: https://doaj.org/toc/2001-1326

Access URL: https://doaj.org/article/7c4c48b22ae64473a9d57ce187ede230

In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics

Authors: Yi Yang, Xiaohui Liu, Chengpin Shen, Yu Lin, Pengyuan Yang, Liang Qiao

Source: Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/77e3c40bed5d4202a8599e1247e8d409

ER-residential Nogo-B accelerates NAFLD-associated HCC mediated by metabolic reprogramming of oxLDL lipophagy

Authors: Yuan Tian, Bin Yang, Weinan Qiu, Yajing Hao, Zhenxing Zhang, Bo Yang, Nan Li, Shuqun Cheng, Zhangjun Lin, Yao-cheng Rui, Otto K. W. Cheung, Weiqin Yang, William K. K. Wu, Yue-Sun Cheung, Paul B. S. Lai, Jianjun Luo, Joseph J. Y. Sung, Runsheng Chen, Hong-Yang Wang, Alfred S. L. Cheng, Pengyuan Yang

Source: Nature Communications, Vol 10, Iss 1, Pp 1-16 (2019)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/a8d1c1e18c374e28bc9f4c1c7dd4b98d

Precision N-Glycoproteomic Profiling of Murine Peritoneal Macrophages After Different Stimulations

Authors: Lujie Yang, Tianqi Gong, Huali Shen, Jiangnan Pei, Lei Zhang, Quanqing Zhang, Yuanyu Huang, Zuojian Hu, Ziyue Pan, Pengyuan Yang, Ling Lin, Hongxiu Yu

Source: Frontiers in Immunology, Vol 12 (2021)

Subject Terms: macrophage, N-glycosylation, Toll-like receptors, glycoproteomics, inflammatory response, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2021.722293/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/6547037262524c62ac210a3c22b1fcc2

gQuant, an Automated Tool for Quantitative Glycomic Data Analysis

Authors: Jiangming Huang, Biyun Jiang, Mingqi Liu, Pengyuan Yang, Weiqian Cao

Source: Frontiers in Chemistry, Vol 9 (2021)

Subject Terms: glycomic quantitation, stable isotope labeling, MALDI-MS analysis, quantitative tool, automated processing, Chemistry, QD1-999

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fchem.2021.707738/full; https://doaj.org/toc/2296-2646

Access URL: https://doaj.org/article/357d2f9ac4134adb822e259400209f48