Exploring the Potentials and Challenges of Using Large Language Models for the Analysis of Transcriptional Regulation of Long Non-coding RNAs

Authors: Wang, Wei, Hou, Zhichao, Liu, Xiaorui, Peng, Xinxia

Subject Terms: Quantitative Biology - Genomics, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2411.03522

LLA:Line Loss Anomalies Detection of Substation Areas Based on BACC Dual-Channel

Authors: Qi, Chengfei, Peng, Xinxia, Wang, Yachao, Li, Wenwen, Ren, Chenwei, Yuan, Peisen

Source: 2024 7th International Conference on Energy, Electrical and Power Engineering (CEEPE) Energy, Electrical and Power Engineering (CEEPE), 2024 7th International Conference on. :448-453 Apr, 2024

Relation: 2024 7th International Conference on Energy, Electrical and Power Engineering (CEEPE)

Feature selection using co-occurrence correlation improves cell clustering and embedding in single cell RNAseq data

Authors: Walsh, Evan S., Ghashghaei, H. Troy, Peng, Xinxia

Source: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2021 IEEE International Conference on. :751-756 Dec, 2021

Relation: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Computational identification of extra coding RNAs related to HIV-1 infection

Authors: Huntress, Ian, Harrell, Erin, Brochu, Hayden, Peng, Xinxia

Source: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2019 IEEE International Conference on. :2810-2815 Nov, 2019

Relation: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Design of password encryption model based on AES algorithm

Authors: Liu, Ying, Zhang, Wei, Peng, Xinxia, Liu, Yan, Zheng, Sida, Wei, Tongjia, Wang, Liang

Source: 2019 IEEE 1st International Conference on Civil Aviation Safety and Information Technology (ICCASIT) Civil Aviation Safety and Information Technology (ICCASIT), 2019 IEEE 1st International Conference on. :385-389 Oct, 2019

Relation: 2019 IEEE 1st International Conference on Civil Aviation Safety and Information Technology (ICCASIT)

Task Execution Ability Evaluation Method of Smart Meter Considering Time Series Influence

Authors: Zheng, Sida, Liu, Ying, Liu, Yan, Peng, Xinxia, Yang, Xiaokun

Source: 2019 IEEE 3rd International Electrical and Energy Conference (CIEEC) Electrical and Energy Conference (CIEEC), 2019 IEEE 3rd International. :1798-1803 Sep, 2019

Relation: 2019 IEEE 3rd International Electrical and Energy Conference (CIEEC)

Single-Cell—Based High-Throughput Ig and TCR Repertoire Sequencing Analysis in Rhesus Macaques

Authors: Walsh, Evan S., Tollison, Tammy S., Brochu, Hayden N., Shaw, Brian I., Diveley, Kayleigh R., Chou, Hsuan, Law, Lynn, Kirk, Allan D., Gale, Michael, Peng, Xinxia

Source: Journal of immunology. 208(3):762-771

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN628547657&indx=1&recIds=ETOCRN628547657

Diagnostic-avoiding Chlamydia trachomatis variants detected in cervical and endometrial specimens from women during 16S microbiome profiling.

Authors: Jeong, Sangmi, Tollison, Tammy, Brochu, Hayden, Chou, Hsuan, Yu, Tammy, Baghaie, Priyanka, Yount, Kacy S., Darville, Toni, Wiesenfeld, Harold C., Hillier, Sharon L., Peng, Xinxia, O'Connell, Catherine M.

Source: BMC Infectious Diseases; 3/12/2025, Vol. 25 Issue 1, p1-8, 8p

Subject Terms: CHLAMYDIA trachomatis, NEISSERIA gonorrhoeae, CHLAMYDIA infections, T cells, GONORRHEA

Fc Characteristics Mediate Selective Placental Transfer of IgG in HIV-Infected Women

Authors: Martinez, David R., Fong, Youyi, Li, Shuk Hang, Yang, Fang, Jennewein, Madeleine F., Weiner, Joshua A., Harrell, Erin A., Mangold, Jesse F., Goswami, Ria, Seage, George R., III, Alter, Galit, Ackerman, Margaret E., Peng, Xinxia, Fouda, Genevieve G., Permar, Sallie R.

Source: In Cell 27 June 2019 178(1):190-201

Compression of next-generation sequencing reads aided by highly efficient de novo assembly

Authors: Jones, Daniel C., Ruzzo, Walter L., Peng, Xinxia, Katze, Michael G.

Subject Terms: Quantitative Biology - Quantitative Methods, Computer Science - Data Structures and Algorithms, Quantitative Biology - Genomics

Access URL: http://arxiv.org/abs/1207.2424

Macrophage-associated wound healing contributes to African green monkey SIV pathogenesis control

Authors: Barrenas, Fredrik, Raehtz, Kevin, Xu, Cuiling, Law, Lynn, Green, Richard, Silvestri, Guido, Bosinger, Steven, Nishida, Andrew, Li, Qingsheng, Lu, Wuxun, Zhang, Jianshui, Thomas, Matthew, Chang, Jean, Smith, Elise, Weiss, Jeffrey, Dawoud, Reem, Richter, George, Trichel, Anita, Ma, Dongzhu, Peng, Xinxia, Komorowski, Jan, Apetrei, Cristian, Pandrea, Ivona, Gale, Michael

Source: Nature communications. 10(1):1-15

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190918741.0x000001&indx=1&recIds=ETOCvdc_100190918741.0x000001

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism

Authors: Tisoncik-Go, Jennifer, Gasper, David J., Kyle, Jennifer E., Eisfeld, Amie J., Selinger, Christian, Hatta, Masato, Morrison, Juliet, Korth, Marcus J., Zink, Erika M., Kim, Young-Mo, Schepmoes, Athena A., Nicora, Carrie D., Purvine, Samuel O., Weitz, Karl K., Peng, Xinxia, Green, Richard R., Tilton, Susan C., Webb-Robertson, Bobbie-Jo, Waters, Katrina M., Metz, Thomas O., Smith, Richard D., Kawaoka, Yoshihiro, Suresh, M., Josset, Laurence, Katze, Michael G.

Source: In Cell Host & Microbe 10 February 2016 19(2):254-266

Evaluation of the innate immune responses to influenza and live-attenuated influenza vaccine infection in primary differentiated human nasal epithelial cells

Authors: Forero, Adriana, Fenstermacher, Katherine, Wohlgemuth, Nicholas, Nishida, Andrew, Carter, Victoria, Smith, Elise A., Peng, Xinxia, Hayes, Melissa, Francis, Doreen, Treanor, John, Morrison, Juliet, Klein, Sabra L., Lane, Andrew, Katze, Michael G., Pekosz, Andrew

Source: Vaccine. 35(45):6112-6121

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100064418731.0x000001&indx=1&recIds=ETOCvdc_100064418731.0x000001

Inhalation of lung spheroid cell secretome and exosomes promotes lung repair in pulmonary fibrosis

Authors: Dinh, Phuong-Uyen C., Paudel, Dipti, Brochu, Hayden, Popowski, Kristen D., Gracieux, M. Cyndell, Cores, Jhon, Huang, Ke, Hensley, M. Taylor, Harrell, Erin, Vandergriff, Adam C., George, Arianna K., Barrio, Raina T., Hu, Shiqi, Allen, Tyler A., Blackburn, Kevin, Caranasos, Thomas G., Peng, Xinxia, Schnabel, Lauren V., Adler, Kenneth B., Lobo, Leonard J., Goshe, Michael B., Cheng, Ke

Source: Nature communications. 11(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164506882.0x000001&indx=1&recIds=ETOCvdc_100164506882.0x000001

A Combined Transcriptome and Proteome Survey of Malaria Parasite Liver Stages

Authors: Tarun, Alice S., Peng, Xinxia, Dumpit, Ronald F., Ogata, Yuko, Silva-Rivera, Hilda, Camargo, Nelly, Daly, Thomas M., Bergman, Lawrence W., Kappe, Stefan H. I.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2008 Jan 01. 105(1), 305-310.

Access URL: https://www.jstor.org/stable/25451079

Annotation of long non-coding RNAs expressed in Collaborative Cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts

Authors: Josset, Laurence, Tchitchek, Nicolas, Gralinski, Lisa E, Ferris, Martin T, Eisfeld, Amie J, Green, Richard R, Thomas, Matthew J, Tisoncik-Go, Jennifer, Schroth, Gary P, Kawaoka, Yoshihiro, Pardo-Manuel de Villena, Fernando, Baric, Ralph S, Heise, Mark T, Peng, Xinxia, Katze, Michael G

Source: RNA biology. 11(7):875-890

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100050714414.0x000001&indx=1&recIds=ETOCvdc_100050714414.0x000001

Author Correction: Macrophage-associated wound healing contributes to African green monkey SIV pathogenesis control

Authors: Barrenas, Fredrik, Raehtz, Kevin, Xu, Cuiling, Law, Lynn, Green, Richard R., Silvestri, Guido, Bosinger, Steven E., Nishida, Andrew, Li, Qingsheng, Lu, Wuxun, Zhang, Jianshui, Thomas, Matthew J., Chang, Jean, Smith, Elise, Weiss, Jeffrey M., Dawoud, Reem A., Richter, George H., Trichel, Anita, Ma, Dongzhu, Peng, Xinxia, Komorowski, Jan, Apetrei, Cristian, Pandrea, Ivona, Gale, Michael

Source: Nature communications. 10(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100193380303.0x000001&indx=1&recIds=ETOCvdc_100193380303.0x000001

Interleukin-15 response signature predicts RhCMV/SIV vaccine efficacy.

Authors: Barrenäs, Fredrik¹, Hansen, Scott G.², Law, Lynn³, Driscoll, Connor³, Green, Richard R.³, Smith, Elise³, Chang, Jean³, Golez, Inah³, Urion, Taryn³, Peng, Xinxia⁴, Whitmore, Leanne³, Newhouse, Daniel³, Hughes, Colette M.², Morrow, David², Randall, Kurt T.², Selseth, Andrea N.², Ford, Julia C.², Gilbride, Roxanne M.², Randall, Bryan E.², Ainslie, Emily²

Source: PLoS Pathogens; 7/6/2021, Vol. 17 Issue 7, p1-28, 28p

Virus–host interactions: from systems biology to translational research

Authors: Peng, Xinxia, Chan, Eric Y, Li, Yu, Diamond, Deborah L, Korth, Marcus J, Katze, Michael G

Source: In Current Opinion in Microbiology August 2009 12(4):432-438

Alternative splicing and genetic variation of mhc-e: implications for rhesus cytomegalovirus-based vaccines.

Authors: Brochu, Hayden, Wang, Ruihan, Tollison, Tammy, Pyo, Chul-Woo, Thomas, Alexander, Tseng, Elizabeth, Law, Lynn, Picker, Louis J., Gale Jr., Michael, Geraghty, Daniel E., Peng, Xinxia

Source: Communications Biology; 12/19/2022, Vol. 5 Issue 1, p1-13, 13p

Subject Terms: ALTERNATIVE RNA splicing, GENETIC variation, SIMIAN immunodeficiency virus, MACAQUES, VACCINES, RHESUS monkeys, T cells