Annotation of cis-regulatory-associated histone modifications in the genomes of two Thoroughbred stallions.

Authors: Barber, Alexa M., Kingsley, Nicole B., Peng, Sichong, Giulotto, Elena, Bellone, Rebecca R., Finno, Carrie J., Kalbfleisch, Ted, Petersen, Jessica L.

Source: Frontiers in Genetics; 2025, p1-11, 11p

Subject Terms: PARIETAL lobe, STALLIONS, SKELETAL muscle, CHROMATIN, ACQUISITION of data

Investigation of high gamma‐glutamyltransferase syndrome in California Thoroughbred racehorses

Authors: Peng, Sichong, Magdesian, K. Gary, Dowd, Joseph, Blea, Jeffrey, Carpenter, Ryan, Ho, Wayne, Finno, Carrie J.

Source: Journal of veterinary internal medicine. 36(6):2203-2212

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100175234598.0x000001&indx=1&recIds=ETOCvdc_100175234598.0x000001

Increased α‐tocopherol metabolism in horses with equine neuroaxonal dystrophy

Authors: Hales, Erin N., Habib, Hadi, Favro, Gianna, Katzman, Scott, Sakai, R. Russell, Marquardt, Sabin, Bordbari, Matthew H., Ming‐Whitfield, Brittni, Peterson, Janel, Dahlgren, Anna R., Rivas, Victor, Ramirez, Carolina Alanis, Peng, Sichong, Donnelly, Callum G., Dizmang, Bobbi‐Sue, Kallenberg, Angelica, Grahn, Robert, Miller, Andrew D., Woolard, Kevin, Moeller, Benjamin, Puschner, Birgit, Finno, Carrie J.

Source: Journal of veterinary internal medicine. 35(5):2473-2485

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131511823.0x000001&indx=1&recIds=ETOCvdc_100131511823.0x000001

Commercial genetic testing for type 2 polysaccharide storage myopathy and myofibrillar myopathy does not correspond to a histopathological diagnosis

Authors: Valberg, Stephanie J., Finno, Carrie J., Henry, Marisa L., Schott, Melissa, Velez‐Irizarry, Deborah, Peng, Sichong, McKenzie, Erica C., Petersen, Jessica L.

Source: Equine veterinary journal. 53(4):690-700

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100122643092.0x000001&indx=1&recIds=ETOCvdc_100122643092.0x000001

Functional annotation of the animal genomes: An integrated annotation resource for the horse.

Authors: Peng, Sichong¹ (AUTHOR), Dahlgren, Anna R.¹ (AUTHOR), Donnelly, Callum G.¹ (AUTHOR), Hales, Erin N.¹ (AUTHOR), Petersen, Jessica L.² (AUTHOR), Bellone, Rebecca R.^1,3 (AUTHOR), Kalbfleisch, Ted⁴ (AUTHOR), Finno, Carrie J.¹ (AUTHOR) cjfinno@ucdavis.edu

Source: PLoS Genetics. 3/2/2023, Vol. 18 Issue 3, p1-24. 24p.

Subject Terms: *GENETIC regulation, *HORSES, *ANNOTATIONS, *THOROUGHBRED horse, *GENE expression, *ANIMAL populations, *HORSE breeds

A missense mutation in MYH1 is associated with susceptibility to immune-mediated myositis in Quarter Horses

Authors: Finno, Carrie, Gianino, Giuliana, Perumbakkam, Sudeep, Williams, Zoë, Bordbari, Matthew, Gardner, Keri, Burns, Erin, Peng, Sichong, Durward-Akhurst, Sian, Valberg, Stephanie

Source: Skeletal muscle. 8(1):1-13

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100161457039.0x000001&indx=1&recIds=ETOCvdc_100161457039.0x000001

Genetic polymorphisms in vitamin E transport genes as determinants for risk of equine neuroaxonal dystrophy.

Authors: Ma, Yunzhuo¹ (AUTHOR), Peng, Sichong¹ (AUTHOR), Donnelly, Callum G.¹ (AUTHOR), Ghosh, Sharmila¹ (AUTHOR), Miller, Andrew D.² (AUTHOR), Woolard, Kevin³ (AUTHOR), Finno, Carrie J.¹ (AUTHOR) cjfinno@ucdavis.edu

Source: Journal of Veterinary Internal Medicine. Jan/Feb2024, Vol. 38 Issue 1, p417-423. 7p.

Subject Terms: *VITAMIN E, *GENETIC polymorphisms, *WHOLE genome sequencing, *DYSTROPHY, *GENETIC variation, *BLOOD coagulation factor XIII, *POSTMORTEM changes

The localization of centromere protein A is conserved among tissues.

Authors: Cappelletti, Eleonora, Piras, Francesca M., Sola, Lorenzo, Santagostino, Marco, Petersen, Jessica L., Bellone, Rebecca R., Finno, Carrie J., Peng, Sichong, Kalbfleisch, Ted S., Bailey, Ernest, Nergadze, Solomon G., Giulotto, Elena

Source: Communications Biology; 9/21/2023, Vol. 6 Issue 1, p1-8, 8p

Subject Terms: CENTROMERE, SATELLITE DNA, GENE mapping, FETAL tissues, CHROMOSOMES, TISSUES, EQUINE influenza

A nonsense variant in Rap Guanine Nucleotide Exchange Factor 5 (RAPGEF5) is associated with equine familial isolated hypoparathyroidism in Thoroughbred Foals.

Authors: Rivas, Victor N.¹, Magdesian, K. Gary², Fagan, Sophia³, Slovis, Nathan M.⁴, Luethy, Daniela⁵, Javsicas, Laura H.⁶, Caserto, Brian G.⁷, Miller, Andrew D.⁸, Dahlgren, Anna R.¹, Peterson, Janel¹, Hales, Erin N.¹, Peng, Sichong¹, Watson, Katherine D.⁹, Khokha, Mustafa K.³, Finno, Carrie J.¹, cjfinno@ucdavis.edu

Source: PLoS Genetics; 9/28/2020, Vol. 16 Issue 9, p1-18, 18p

DNA methylation aging and transcriptomic studies in horses.

Authors: Horvath, Steve, Haghani, Amin, Peng, Sichong, Hales, Erin N., Zoller, Joseph A., Raj, Ken, Larison, Brenda, Robeck, Todd R., Petersen, Jessica L., Bellone, Rebecca R., Finno, Carrie J.

Source: Nature Communications; 1/10/2022, Vol. 13 Issue 1, p1-13, 13p

Subject Terms: DNA methylation, HORSES, RNA methylation, TRANSCRIPTOMES

Successful ATAC-Seq From Snap-Frozen Equine Tissues.

Authors: Peng, Sichong, Bellone, Rebecca, Petersen, Jessica L., Kalbfleisch, Theodore S., Finno, Carrie J.

Source: Frontiers in Genetics; 6/16/2021, Vol. 11, p1-10, 10p

Subject Terms: NUCLEOTIDE sequencing, TISSUES, ANIMAL experimentation, CHROMATIN

Generation of a Biobank From Two Adult Thoroughbred Stallions for the Functional Annotation of Animal Genomes Initiative.

Authors: Donnelly, Callum G., Bellone, Rebecca R., Hales, Erin N., Nguyen, Annee, Katzman, Scott A., Dujovne, Ghislaine A., Knickelbein, Kelly E., Avila, Felipe, Kalbfleisch, Ted S., Giulotto, Elena, Kingsley, Nicole B., Tanaka, Jocelyn, Esdaile, Elizabeth, Peng, Sichong, Dahlgren, Anna, Fuller, Anna, Mienaltowski, Michael J., Raudsepp, Terje, Affolter, Verena K., Petersen, Jessica L.

Source: Frontiers in Genetics; 3/8/2021, Vol. 11, pN.PAG-N.PAG, 6p

Subject Terms: STALLIONS, FORELIMB, GASTROINTESTINAL contents, GENE libraries, GENOMES, CEREBROSPINAL fluid

176 Functional Annotation of the Equine Genome: from Sample Collection to Fair Data

Authors: Petersen, Jessica L, Barber, Alexa, Finno, Carrie J, Bellone, Rebecca R, Peng, Sichong, Kingsley, Nicole B, Capelletti, Eleonora, Piras, Francesca M, Giulotto, Elena, Kalbfleisch, Ted

Source: Journal of Animal Science; November 2023, Vol. 101 Issue: 1, Number 1 Supplement 2 p25-25, 1p

Decoding the Equine Genome: Lessons from ENCODE.

Authors: Peng, Sichong¹ (AUTHOR) scpeng@ucdavis.edu, Petersen, Jessica L.² (AUTHOR) jessica.petersen@unl.edu, Bellone, Rebecca R.^1,3 (AUTHOR) rbellone@ucdavis.edu, Kalbfleisch, Ted⁴ (AUTHOR) ted.kalbfleisch@uky.edu, Kingsley, N. B.^1,3 (AUTHOR) nbkingsley@ucdavis.edu, Barber, Alexa M.² (AUTHOR) alexa.barber@huskers.unl.edu, Cappelletti, Eleonora⁵ (AUTHOR) eleonora.cappelletti@unipv.it, Giulotto, Elena⁵ (AUTHOR) elena.giulotto@unipv.it, Finno, Carrie J.¹ (AUTHOR) cjfinno@gmail.com

Source: Genes. Nov2021, Vol. 12 Issue 11, p1707. 1p.

Subject Terms: *GENE expression, *INDIVIDUALIZED medicine, *GENOMICS

Mandibulofacial Dysostosis Attributed to a Recessive Mutation of CYP26C1 in Hereford Cattle.

Authors: Sieck, Renae L., Fuller, Anna M., Bedwell, Patrick S., Ward, Jack A., Sanders, Stacy K., Xiang, Shi-Hua, Peng, Sichong, Petersen, Jessica L., Steffen, David J.

Source: Genes; Nov2020, Vol. 11 Issue 11, p1246, 1p

Subject Terms: HEREFORD cattle, EMBRYOLOGY, NUCLEOTIDE sequencing, CATTLE, TRETINOIN, MISSENSE mutation, CALVES

17 A De novo Recessive Mutation Causative of Mandibulofacial Dysostosis in Hereford Cattle

Authors: Sieck, Renae L, Fuller, Anna M, Bedwell, Patrick, Ward, Jack, Sanders, Stacy, Xiang, Shi-Hua, Peng, Sichong, Steffen, David, Petersen, Jessica L

Source: Journal of Animal Science; May 2021, Vol. 99 Issue: 1, Number 1 Supplement 1 p27-27, 1p

Genome-Wide Association Study and Subsequent Exclusion of ATCAY as a Candidate Gene Involved in Equine Neuroaxonal Dystrophy Using Two Animal Models.

Authors: Hales, Erin N, Esparza, Christina, Peng, Sichong, Dahlgren, Anna R, Peterson, Janel M, Miller, Andrew D, Finno, Carrie J

Source: Genes; Jan2020, Vol. 11 Issue 1, p82, 1p

Subject Terms: DYSTROPHY, ANIMAL models in research, VITAMIN E, CENTRAL nervous system, SYMPTOMS, FUNCTIONAL analysis

A missense mutation in MYH1 is associated with susceptibility to immune-mediated myositis in Quarter Horses.

Authors: Finno, Carrie J., Gianino, Giuliana, Perumbakkam, Sudeep, Williams, Zoë J., Bordbari, Matthew H., Gardner, Keri L., Burns, Erin, Peng, Sichong, Durward-Akhurst, Sian A., Valberg, Stephanie J.

Source: Skeletal Muscle; 3/6/2018, Vol. 8, p1-1, 1p

Subject Terms: MYOSITIS, MISSENSE mutation, INFLAMMATORY mediators, GENOTYPES, HAPLOTYPES, MYOSIN, PATIENTS