Implementation of Digital Pathology and Artificial Intelligence in Routine Pathology Practice

Authors: Zhang, David Y. ^{a, b, ∗}, Venkat, Arsha ^c, Khasawneh, Hamdi ^d, Sali, Rasoul ^{a, e}, Zhang, Valerio ^a, Pei, Zhiheng ^{b, f, g, ∗}

Source: In Laboratory Investigation September 2024 104(9)

Oral and gastric microbiome in relation to gastric intestinal metaplasia

Authors: Wu, Fen, Yang, Liying, Hao, Yuhan, Zhou, Boyan, Hu, Jiyuan, Yang, Yaohua, Bedi, Sukhleen, Sanichar, Navin Ganesh, Cheng, Charley, Perez‐Perez, Guillermo, Tseng, Wenche, Tseng, Wenzhi, Tseng, Mengkao, Francois, Fritz, Khan, Abraham R., Li, Yihong, Blaser, Martin J., Shu, Xiao‐ou, Long, Jirong, Li, Huilin, Pei, Zhiheng, Chen, Yu

Source: International journal of cancer. 150(6):928-940

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100187490336.0x000001&indx=1&recIds=ETOCvdc_100187490336.0x000001

Prospective study of oral microbiome and gastric cancer risk among Asian, African American and European American populations

Authors: Yang, Yaohua, Long, Jirong, Wang, Cong, Blot, William J., Pei, Zhiheng, Shu, Xiang, Wu, Fen, Rothman, Nathaniel, Wu, Jie, Lan, Qing, Cai, Qiuyin, Zheng, Wei, Chen, Yu, Shu, Xiao‐Ou

Source: International journal of cancer. 150(6):916-927

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100187490323.0x000001&indx=1&recIds=ETOCvdc_100187490323.0x000001

Progressive dysbiosis of human orodigestive microbiota along the sequence of gastroesophageal reflux, Barrett's esophagus and esophageal adenocarcinoma

Authors: Hao, Yuhan, Karaoz, Ulas, Yang, Liying, Yachimski, Patrick S., Tseng, Wenzhi, Nossa, Carlos W., Ye, Weimin, Tseng, Mengkao, Poles, Michael, Francois, Fritz, Traube, Morris, Brown, Stuart M., Chen, Yu, Torralba, Manolito, Peek, Richard M., Brodie, Eoin L., Pei, Zhiheng

Source: International journal of cancer. 151(10):1703-1716

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100182137259.0x000001&indx=1&recIds=ETOCvdc_100182137259.0x000001

The Association Between Smoking and Gut Microbiome in Bangladesh

Authors: Nolan-Kenney, Rachel, Wu, Fen, Hu, Jiyuan, Yang, Liying, Kelly, Dervla, Li, Huilin, Jasmine, Farzana, Kibriya, Muhammad G., Parvez, Faruque, Shaheen, Ishrat, Sarwar, Golam, Ahmed, Alauddin, Eunus, Mahbub, Islam, Tariqul, Pei, Zhiheng, Ahsan, Habibul, Chen, Yu

Source: Nicotine & Tobacco Research, 2020 Aug 01. 22(8), 1339-1346.

Access URL: https://www.jstor.org/stable/27020175

Cigarette smoking and oral microbiota in low-income and African-American populations

Authors: Yang, Yaohua, Zheng, Wei, Cai, Qiu-Yin, Shrubsole, Martha J, Pei, Zhiheng, Brucker, Robert, Steinwandel, Mark D, Bordenstein, Seth R, Li, Zhigang, Blot, William J, Shu, Xiao-Ou, Long, Jirong

Source: Journal of Epidemiology and Community Health (1979-), 2019 Dec 01. 73(12), 1108-1115.

Access URL: https://www.jstor.org/stable/26896557

The association between gut microbiome and anthropometric measurements in Bangladesh

Authors: Osborne, Gwendolyn, Wu, Fen, Yang, Liying, Kelly, Dervla, Hu, Jiyuan, Li, Huilin, Jasmine, Farzana, Kibriya, Muhammad G, Parvez, Faruque, Shaheen, Ishrat, Sarwar, Golam, Ahmed, Alauddin, Eunus, Mahbub, Islam, Tariqul, Pei, Zhiheng, Ahsan, Habibul, Chen, Yu

Source: Gut microbes. 11(1):63-76

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100098200465.0x000001&indx=1&recIds=ETOCvdc_100098200465.0x000001

The role of gut microbiome and its interaction with arsenic exposure in carotid intima-media thickness in a Bangladesh population

Authors: Wu, Fen, Yang, Liying, Islam, Muhammad Tariqul, Jasmine, Farzana, Kibriya, Muhammad G., Nahar, Jebun, Barmon, Bhaswati, Parvez, Faruque, Sarwar, Golam, Ahmed, Alauddin, Eunus, Mahbub, Islam, Tariqul, Slavkovich, Vesna, Hu, Jiyuan, Li, Huilin, Graziano, Joseph H., Pei, Zhiheng, Ahsan, Habibul, Chen, Yu

Source: In Environment International February 2019 123:104-113

Differential effects of depot medroxyprogesterone acetate administration on vaginal microbiome in Hispanic White and Black women

Authors: Yang, Liying, Hao, Yuhan, Hu, Jiyuan, Kelly, Dervla, Li, Huilin, Brown, Stuart, Tasker, Carley, Roche, Natalie E., Chang, Theresa L., Pei, Zhiheng

Source: Emerging microbes & infections. 8(1):197-210

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100094547999.0x000001&indx=1&recIds=ETOCvdc_100094547999.0x000001

Mitochondrial somatic mutations and the lack of viral genomic variation in recurrent respiratory papillomatosis

Authors: Hao, Yuhan, Ruiz, Ryan, Yang, Liying, Neto, Antonio, Amin, Milan, Kelly, Dervla, Achlatis, Stratos, Roof, Scott, Bing, Renjie, Kannan, Kasthuri, Brown, Stuart, Pei, Zhiheng, Branski, Ryan

Source: Scientific reports. 9(1):1-8

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190955925.0x000001&indx=1&recIds=ETOCvdc_100190955925.0x000001

Periodontal pathogens are a risk factor of oral cavity squamous cell carcinoma, independent of tobacco and alcohol and human papillomavirus

Authors: Ganly, Ian, Yang, Liying, Giese, Rachel A., Hao, Yuhan, Nossa, Carlos W., Morris, Luc G.T., Rosenthal, Matthew, Migliacci, Jocelyn, Kelly, Dervla, Tseng, Wenzhi, Hu, Jiyuan, Li, Huilin, Brown, Stuart, Pei, Zhiheng

Source: International journal of cancer. 145(3):775-784

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100084080450.0x000001&indx=1&recIds=ETOCvdc_100084080450.0x000001

Bacterial Biota in the Human Distal Esophagus

Authors: Pei, Zhiheng, Bini, Edmund J., Yang, Liying, Zhou, Meisheng, Francois, Fritz, Blaser, Martin J., Lederberg, Joshua

Source: Proceedings of the National Academy of Sciences of the United States of America, 2004 Mar . 101(12), 4250-4255.

Access URL: https://www.jstor.org/stable/3371595

Molecular Analysis of Sarcoidosis Tissues for Mycobacterium Species DNA.

Authors: Drake, Wonder Puryear, Pei, Zhiheng, Pride, David T.

Source: Emerging Infectious Diseases; November 2002, Vol. 8 Issue 11, p1334-1341, 8p

Drinking alcohol is associated with variation in the human oral microbiome in a large study of American adults

Authors: Fan, Xiaozhou, Peters, Brandilyn, Jacobs, Eric, Gapstur, Susan, Purdue, Mark, Freedman, Neal, Alekseyenko, Alexander, Wu, Jing, Yang, Liying, Pei, Zhiheng, Hayes, Richard, Ahn, Jiyoung

Source: Microbiome. 6(1):1-15

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100161876041.0x000001&indx=1&recIds=ETOCvdc_100161876041.0x000001

HPViewer: sensitive and specific genotyping of human papillomavirus in metagenomic DNA

Authors: Hao, Yuhan, Yang, Liying, Galvao Neto, Antonio, Amin, Milan R, Kelly, Dervla, Brown, Stuart M, Branski, Ryan C, Pei, Zhiheng

Source: Bioinformatics. 34(12):1986-1995

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100088715905.0x000001&indx=1&recIds=ETOCvdc_100088715905.0x000001

Microbiome and potential targets for chemoprevention of esophageal adenocarcinoma

Authors: Neto, Antonio Galvao, Whitaker, April, Pei, Zhiheng

Source: In Seminars in Oncology February 2016 43(1):86-96

Integrated Analysis of Biopsies from Inflammatory Bowel Disease Patients Identifies SAA1 as a Link Between Mucosal Microbes with TH17 and TH22 Cells

Authors: Tang, Mei San, Bowcutt, Rowann, Leung, Jacqueline M., Wolff, Martin J., Gundra, Uma M., Hudesman, David, Malter, Lisa B., Poles, Michael A., Chen, Lea Ann, Pei, Zhiheng, Neto, Antonio G., Abidi, Wasif M., Ullman, Thomas, Mayer, Lloyd, Bonneau, Richard A., Cho, Ilseung, Loke, P'ng

Source: Inflammatory bowel diseases. 23(9):1544-1554

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100048151561.0x000001&indx=1&recIds=ETOCvdc_100048151561.0x000001

The Interrelationships of the Gut Microbiome and Inflammation in Colorectal Carcinogenesis

Authors: Cho, Margaret, Carter, Janell, Harari, Saul, Pei, Zhiheng

Source: In Clinics in Laboratory Medicine December 2014 34(4):699-710

Microbiome, Innate Immunity, and Esophageal Adenocarcinoma

Authors: Baghdadi, Jonathan, Chaudhary, Noami, Pei, Zhiheng, Yang, Liying

Source: In Clinics in Laboratory Medicine December 2014 34(4):721-732

Case control study comparing the HPV genome in patients with oral cavity squamous cell carcinoma to normal patients using metagenomic shotgun sequencing.

Authors: Ganly, Ian¹ ganlyi@mskcc.org, Pei, Zhiheng^2,3,4, Hao, Yuhan^2,5,6, Ma, Yingfei^3,7, Rosenthal, Matthew¹, Wu, Zhenglin^8,9, Migliacci, Jocelyn¹, Huang, Bin^8,10, Katabi, Nora¹¹, Tseng, Wenzhi², Brown, Stuart⁵, Tang, Yi-Wei^8,12, Yang, Liying^2,3 liying.yang@nyumc.org

Source: Scientific Reports. 2/16/2021, Vol. 11 Issue 1, p1-9. 9p.

Subject Terms: *PAPILLOMAVIRUSES, *DENTAL caries, *SHOTGUN sequencing, *HUMAN genome, *SMOKING