F-BIAS: Towards a distributed national core facility for Bioimage Analysis

Authors: Ambroset, Mélodie, Anselmet, Marie, Benedetti, Clément, Meslin, Arthur, Maillot, Aurélien, Rouvière, Christian, Maucort, Guillaume, Breuilly, Marine, Albert, Marvin, Letort, Gaëlle, Trullo, Antonio, Bäcker, Volker, Mutterer, Jérôme, Cordelières, Fabrice, Pécot, Thierry, Phan, Minh-Son, Rigaud, Stéphane, Feyeux, Magali, Paul-Gilloteaux, Perrine, Macé, Anne-Sophie, Tinevez, Jean-Yves

Subject Terms: Quantitative Biology - Other Quantitative Biology

Access URL: http://arxiv.org/abs/2409.15009

Bio-Image Informatics Index BIII: A unique database of image analysis tools and workflows for and by the bioimaging community

Authors: Zhang, Chong, Gaignard, Alban, Kalas, Matus, Levet, Florian, Delestro, Felipe, Lindblad, Joakim, Sladoje, Natasa, Plantard, Laure, Latour, Alain, Haase, Robert, Martins, Gabriel, Sampaio, Paula, Scholz, Leandro, taggers, NEUBIAS, Tosi, Sébastien, Miura, Kota, Colombelli, Julien, Paul-Gilloteaux, Perrine

Subject Terms: Quantitative Biology - Quantitative Methods, 68U10, 65D18, I.4, H.1, J.3

Access URL: http://arxiv.org/abs/2312.11256

A Registration Error Estimation Framework for Correlative Imaging

Authors: Potier, Guillaume, Lavancier, Frederic, Kunne, Stephan, Paul-Gilloteaux, Perrine

Source: 2021 IEEE International Conference on Image Processing (ICIP) Image Processing (ICIP), 2021 IEEE International Conference on. :131-135 Sep, 2021

Relation: 2021 IEEE International Conference on Image Processing (ICIP)

Towards deep learning-powered IVF: A large public benchmark for morphokinetic parameter prediction

Authors: Gomez, Tristan, Feyeux, Magalie, Normand, Nicolas, David, Laurent, Paul-Gilloteaux, Perrine, Fréour, Thomas, Mouchère, Harold

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2203.00531

QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Authors: Nelson, Glyn, Boehm, Ulrike, Bagley, Steve, Bajcsy, Peter, Bischof, Johanna, Brown, Claire M, Dauphin, Aurelien, Dobbie, Ian M, Eriksson, John E, Faklaris, Orestis, Fernandez-Rodriguez, Julia, Ferrand, Alexia, Gelman, Laurent, Gheisari, Ali, Hartmann, Hella, Kukat, Christian, Laude, Alex, Mitkovski, Miso, Munck, Sebastian, North, Alison J, Rasse, Tobias M, Resch-Genger, Ute, Schuetz, Lucas C, Seitz, Arne, Strambio-De-Castillia, Caterina, Swedlow, Jason R, Alexopoulos, Ioannis, Aumayr, Karin, Avilov, Sergiy, Bakker, Gert-Jan, Bammann, Rodrigo R, Bassi, Andrea, Beckert, Hannes, Beer, Sebastian, Belyaev, Yury, Bierwagen, Jakob, Birngruber, Konstantin A, Bosch, Manel, Breitlow, Juergen, Cameron, Lisa A, Chalfoun, Joe, Chambers, James J, Chen, Chieh-Li, Conde-Sousa, Eduardo, Corbett, Alexander D, Cordelieres, Fabrice P, Del Nery, Elaine, Dietzel, Ralf, Eismann, Frank, Fazeli, Elnaz, Felscher, Andreas, Fried, Hans, Gaudreault, Nathalie, Goh, Wah Ing, Guilbert, Thomas, Hadleigh, Roland, Hemmerich, Peter, Holst, Gerhard A, Itano, Michelle S, Jaffe, Claudia B, Jambor, Helena K, Jarvis, Stuart C, Keppler, Antje, Kirchenbuechler, David, Kirchner, Marcel, Kobayashi, Norio, Krens, Gabriel, Kunis, Susanne, Lacoste, Judith, Marcello, Marco, Martins, Gabriel G, Metcalf, Daniel J, Mitchell, Claire A, Moore, Joshua, Mueller, Tobias, Nelson, Michael S, Ogg, Stephen, Onami, Shuichi, Palmer, Alexandra L, Paul-Gilloteaux, Perrine, Pimentel, Jaime A, Plantard, Laure, Podder, Santosh, Rexhepaj, Elton, Royon, Arnaud, Saari, Markku A, Schapman, Damien, Schoonderwoert, Vincent, Schroth-Diez, Britta, Schwartz, Stanley, Shaw, Michael, Spitaler, Martin, Stoeckl, Martin T, Sudar, Damir, Teillon, Jeremie, Terjung, Stefan, Thuenauer, Roland, Wilms, Christian D, Wright, Graham D, Nitschke, Roland

Source: J. Microsc. 2021;1-18

Subject Terms: Quantitative Biology - Other Quantitative Biology, Physics - Instrumentation and Detectors

Access URL: http://arxiv.org/abs/2101.09153

Cross-modal registration using point clouds and graph-matching in the context of correlative microscopies

Authors: Kunne, Stephan, Potier, Guillaume, Mérot, Jean, Paul-Gilloteaux, Perrine

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Quantitative Biology - Tissues and Organs, 05C60, I.4, J.3

Access URL: http://arxiv.org/abs/2012.00656

Single cell profiling of circulating autoreactive CD4 T cells from patients with autoimmune liver diseases suggests tissue imprinting.

Authors: Cardon, Anaïs, Guinebretière, Thomas, Dong, Chuang, Gil, Laurine, Ado, Sakina, Gavlovsky, Pierre-jean, Braud, Martin, Danger, Richard, Schultheiß, Christoph, Doméné, Aurélie, Paul-Gilloteaux, Perrine, Chevalier, Caroline, Bernier, Laura, Judor, Jean-Paul, Fourgeux, Cynthia, Imbert, Astrid, Khaldi, Marion, Bardou-Jacquet, Edouard, Elkrief, Laure, Lannes, Adrien

Source: Nature Communications; 1/29/2025, Vol. 16 Issue 1, p1-20, 20p

Subject Terms: T-cell exhaustion, T cells, IMMUNE checkpoint proteins, MEDICAL sciences, LIVER cells

Correlation and variational approaches for motion and diffusion estimation in fluorescence imaging

Authors: Fortun, Denis, Chen Chen, Paul-Gilloteaux, Perrine, Waharte, Francois, Salamero, Jean, Kervrann, Charles

Source: 21st European Signal Processing Conference (EUSIPCO 2013) Signal Processing Conference (EUSIPCO), 2013 Proceedings of the 21st European. :1-5 Sep, 2013

Relation: 2013 21st European Signal Processing Conference (EUSIPCO)

Aggregation of patch-based estimations for illumination-invariant optical flow in live cell imaging

Authors: Fortun, Denis, Bouthemy, Patrick, Paul-Gilloteaux, Perrine, Kervrann, Charles

Source: 2013 IEEE 10th International Symposium on Biomedical Imaging Biomedical Imaging (ISBI), 2013 IEEE 10th International Symposium on. :660-663 Apr, 2013

Relation: 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI 2013)

In situ fiducial markers for 3D correlative cryo-fluorescence and FIB-SEM imaging

Authors: Scher, Nadav, Rechav, Katya, Paul-Gilloteaux, Perrine, Avinoam, Ori

Source: In iScience 23 July 2021 24(7)

Bioimage informatics: Investing in software usability is essential.

Authors: Paul-Gilloteaux, Perrine^1,2 (AUTHOR) perrine.paul-gilloteaux@univ-nantes.fr

Source: PLoS Biology. 7/31/2023, Vol. 21 Issue 7, p1-4. 4p. 1 Graph.

Subject Terms: *NURSING informatics, *IMAGE analysis, *COMPUTER software, *USER experience

3D Correlative Cryo-Structured Illumination Fluorescence and Soft X-ray Microscopy Elucidates Reovirus Intracellular Release Pathway

Authors: Kounatidis, Ilias, Stanifer, Megan L., Phillips, Michael A., Paul-Gilloteaux, Perrine, Heiligenstein, Xavier, Wang, Hongchang, Okolo, Chidinma A., Fish, Thomas M., Spink, Matthew C., Stuart, David I., Davis, Ilan, Boulant, Steeve, Grimes, Jonathan M., Dobbie, Ian M., Harkiolaki, Maria

Source: In Cell 23 July 2020 182(2):515-530

BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows

Authors: Rubens, Ulysse, Mormont, Romain, Paavolainen, Lassi, Bäcker, Volker, Pavie, Benjamin, Scholz, Leandro A., Michiels, Gino, Maška, Martin, Ünay, Devrim, Ball, Graeme, Hoyoux, Renaud, Vandaele, Rémy, Golani, Ofra, Stanciu, Stefan G., Sladoje, Natasa, Paul-Gilloteaux, Perrine, Marée, Raphaël, Tosi, Sébastien

Source: In Patterns 12 June 2020 1(3)

Towards quantitative evaluation of wall shear stress from 4D flow imaging

Authors: Levilly, Sébastien, Castagna, Marco, Idier, Jérôme, Bonnefoy, Félicien, Le Touzé, David, Moussaoui, Saïd, Paul-Gilloteaux, Perrine, Serfaty, Jean-Michel

Source: Magnetic resonance imaging. 74:232-243

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100133020703.0x000001&indx=1&recIds=ETOCvdc_100133020703.0x000001

Correlated multimodal imaging in life sciences: lessons learnt.

Authors: Rudraiah, Pavitra Sokke, Camacho, Rafael, Fernandez-Rodriguez, Julia, Fixler, Dror, Grimm, Jan, Gruber, Florian, Kalaš, Matúš, Kremslehner, Christopher, Kuntner, Claudia, Kuzdas-Wood, Daniela, Lindblad, Joakim, Mannheim, Julia G., Marchetti-Deschmann, Martina, Paul-Gilloteaux, Perrine, Sampaio, Paula, Sandbichler, Peter, Sartori-Rupp, Anna, Sladoje, Nataša, Verkade, Paul, Walter, Andreas

Source: Frontiers in Biomaterials Science; 2024, p1-20, 20p

Subject Terms: IMAGE databases, MEDICAL scientists, IMAGE registration, LIFE sciences, MICROSCOPY

A time-lapse embryo dataset for morphokinetic parameter prediction

Authors: Gomez, Tristan, Feyeux, Magalie, Boulant, Justine, Normand, Nicolas, David, Laurent, Paul-Gilloteaux, Perrine, Fréour, Thomas, Mouchère, Harold

Source: Data in brief. 42

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100195227553.0x000001&indx=1&recIds=ETOCvdc_100195227553.0x000001

Chapter 16 - eC-CLEM: A multidimension, multimodel software to correlate intermodal images with a focus on light and electron microscopy

Authors: Heiligenstein, Xavier, Paul-Gilloteaux, Perrine, Raposo, Graça, Salamero, Jean

Source: In Methods in Cell Biology 2017 140:335-352

A Biologist-Friendly Method to Analyze Cross-Correlation Between Protrusion Dynamics and Membrane Recruitment of Actin Regulators

Authors: Paul-Gilloteaux, Perrine, Waharte, Fran�ois, Singh, Manish Kumar, Parrini, Maria Carla

Source: Methods in molecular biology. 1749:279-290

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN615325970&indx=1&recIds=ETOCRN615325970

LINC complex-Lis1 interplay controls MT1-MMP matrix digest-on-demand response for confined tumor cell migration

Authors: Infante, Elvira, Castagnino, Alessia, Ferrari, Robin, Monteiro, Pedro, Agüera-González, Sonia, Paul-Gilloteaux, Perrine, Domingues, Mélanie, Maiuri, Paolo, Raab, Matthew, Shanahan, Catherine, Baffet, Alexandre, Piel, Matthieu, Gomes, Edgar, Chavrier, Philippe

Source: Nature communications. 9(1):1-13

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100170088983.0x000001&indx=1&recIds=ETOCvdc_100170088983.0x000001

Control of the collective migration of enteric neural crest cells by the Complement anaphylatoxin C3a and N-cadherin

Authors: Broders-Bondon, Florence, Paul-Gilloteaux, Perrine, Gazquez, Elodie, Heysch, Julie, Piel, Matthieu, Mayor, Roberto, Lambris, John D., Dufour, Sylvie

Source: In Developmental Biology 1 June 2016 414(1):85-99