Towards the discovery of novel molecular clocks in Prokaryotes.

Authors: Géron, Augustin^1,2 (AUTHOR), Werner, Johannes³ (AUTHOR), Wattiez, Ruddy² (AUTHOR) ruddy.wattiez@umons.ac.be, Matallana-Surget, Sabine¹ (AUTHOR) sabine.matallanasurget@stir.ac.uk

Source: Critical Reviews in Microbiology. Aug2024, Vol. 50 Issue 4, p491-503. 13p.

Subject Terms: *MOLECULAR clock, *PROKARYOTES, *CIRCADIAN rhythms, *METHANOTROPHS, *PHOTOSYNTHETIC bacteria, *ARCHAEBACTERIA, *ENVIRONMENTAL sciences

The immune modules conserved across the tree of life: Towards a definition of ancestral immunity.

Authors: Bernheim, Aude¹ (AUTHOR) aude.bernheim@pasteur.fr, Cury, Jean¹ (AUTHOR), Poirier, Enzo Z.² (AUTHOR) aude.bernheim@pasteur.fr

Source: PLoS Biology. 7/15/2024, Vol. 22 Issue 7, p1-17. 17p.

Subject Terms: *IMMUNITY, *PROKARYOTES, *PROTEIN domains

Advancements in prokaryotic systematics and the role of Bergey's International Society for Microbial Systematicsin addressing challenges in the meta-data era.

Authors: Jiao, Jian-Yu¹ (AUTHOR), Abdugheni, Rashidin² (AUTHOR), Zhang, Dao-Feng³ (AUTHOR), Ahmed, Iftikhar⁴ (AUTHOR), Ali, Mukhtiar¹ (AUTHOR), Chuvochina, Maria⁵ (AUTHOR), Dedysh, Svetlana N⁶ (AUTHOR), Dong, Xiuzhu⁷ (AUTHOR), Göker, Markus⁸ (AUTHOR), Hedlund, Brian P^9,10 (AUTHOR), Hugenholtz, Philip⁵ (AUTHOR), Jangid, Kamlesh¹¹ (AUTHOR), Liu, Shuang-Jiang^7,12 (AUTHOR), Moore, Edward R B¹³ (AUTHOR), Rao, Manik Prabhu Narsing¹⁴ (AUTHOR), Oren, Aharon¹⁵ (AUTHOR), Rossello-Mora, Ramon¹⁶ (AUTHOR), Rekadwad, Bhagwan Narayan¹⁷ (AUTHOR), Salam, Nimaichand¹⁸ (AUTHOR), Shu, Wensheng¹⁹ (AUTHOR)

Source: National Science Review. Jul2024, Vol. 11 Issue 7, p1-13. 13p.

Subject Terms: *SEVENTEENTH century, *PROKARYOTES, *ARCHAEBACTERIA, *METADATA, *MICROBIOLOGISTS

Light Control in Microbial Systems.

Authors: Elahi, Yara¹ (AUTHOR), Baker, Matthew Arthur Barrington¹ (AUTHOR) matthew.baker@unsw.edu.au

Source: International Journal of Molecular Sciences. Apr2024, Vol. 25 Issue 7, p4001. 16p.

Subject Terms: *OPTICAL tweezers, *PROKARYOTES, *GENE expression, *PHOTON upconversion, *ARCHAEBACTERIA, *PHOTORECEPTORS

RFGR: Repeat Finder for Complete and Assembled Whole Genomes and NGS Reads.

Authors: Sukumaran, Rashmi¹, rashmi.dcb@keralauniversity.ac.in, Shahina, K.¹, Nair, Achuthsankar S.¹

Source: Biochemical Genetics; Oct2024, Vol. 62 Issue 5, p4157-4173, 17p

Identification of a novel lipoic acid biosynthesis pathway reveals the complex evolution of lipoate assembly in prokaryotes.

Authors: Tanabe, Tomohisa Sebastian¹ (AUTHOR), Grosser, Martina¹ (AUTHOR), Hahn, Lea¹ (AUTHOR), Kümpel, Carolin¹ (AUTHOR), Hartenfels, Hanna¹ (AUTHOR), Vtulkin, Evelyn¹ (AUTHOR), Flegler, Wanda¹ (AUTHOR), Dahl, Christiane¹ (AUTHOR) chdahl@uni-bonn.de

Source: PLoS Biology. 6/27/2023, Vol. 21 Issue 6, p1-23. 23p. 1 Black and White Photograph, 3 Diagrams, 2 Graphs.

Subject Terms: *LIPOIC acid, *PROKARYOTES, *HORIZONTAL gene transfer, *MITOCHONDRIA formation, *BIOSYNTHESIS, *CARBON metabolism, *UBIQUITINATION

How Many Factors Influence Genomic GC Content Among Prokaryotes?

Authors: Musto, Héctor¹ (AUTHOR) hmusto@gmail.com

Source: Journal of Molecular Evolution. Feb2023, Vol. 91 Issue 1, p6-9. 4p.

Subject Terms: *DNA, *PROKARYOTES, *PROKARYOTIC genomes, *GENETIC drift, *DNA structure, *GENE conversion

SeqCode: A Nomenclatural Code for Prokaryotes.

Authors: Lata, Pushp¹ (AUTHOR), Bhargava, Vatsal¹ (AUTHOR), Gupta, Sonal¹ (AUTHOR), Singh, Ajaib² (AUTHOR), Bala, Kiran³ (AUTHOR), Lal, Rup⁴ (AUTHOR) ruplal@gmail.com

Source: Indian Journal of Microbiology. Sep2024, Vol. 64 Issue 3, p859-866. 8p.

Subject Terms: *PROKARYOTES, *FACILITATED communication, *METADATA, *GENOMES, *MICROORGANISMS

Bioinformatic Assessment of Factors Affecting the Correlation between Protein Abundance and Elongation Efficiency in Prokaryotes.

Authors: Korenskaia, Aleksandra E.^1,2,3 (AUTHOR) korenskaia@bionet.nsc.ru, Matushkin, Yury G.^2,3 (AUTHOR), Lashin, Sergey A.^1,2,3 (AUTHOR), Klimenko, Alexandra I.^1,2 (AUTHOR)

Source: International Journal of Molecular Sciences. Oct2022, Vol. 23 Issue 19, p11996. 23p.

Subject Terms: *RIBOSOMAL proteins, *PROKARYOTES, *PROTEINS, *STATISTICAL correlation, *GENE expression, *CELL physiology

Depth-Dependent Distribution of Prokaryotes in Sediments of the Manganese Crust on Nazimov Guyots of the Magellan Seamounts.

Authors: Sun, Jianxing¹, Zhou, Hongbo^1,2, Cheng, Haina^1,2, Chen, Zhu^1,2, Yang, Jichao³, Wang, Yuguang^1,2, ygwang@csu.edu.cn, Jing, Chunlei⁴, jingchunlei@ndsc.org.cn

Source: Microbial Ecology; Nov2023, Vol. 86 Issue 4, p3027-3042, 16p

Effects of Phosphorus Limitation on the Bioavailability of DOM Released by Marine Heterotrophic Prokaryotes.

Authors: Bouchachi, Nawal¹, nawal.bouchachi@obs-banyuls.fr, Obernosterer, Ingrid¹, Carpaneto Bastos, Cécile¹, Li, Franck¹, Scenna, Lorenzo^1,2, Marie, Barbara¹, Crispi, Olivier¹, Catala, Philippe¹, Ortega-Retuerta, Eva¹, ortegaretuerta@obs-banyuls.fr

Source: Microbial Ecology; Oct2023, Vol. 86 Issue 3, p1961-1971, 11p

Tsetlin Machine in DNA sequence classification : Application to prokaryote gene prediction / A match made in silico

Authors: Liland, Kristian Hovde, Tomic, Oliver, Indahl, Ulf Geir, Futsather, Cecilia Marie, Jiao, Lei, Granmo, Ole-Christoffer, Snipen, Lars Gustav

Source: 2023 International Symposium on the Tsetlin Machine (ISTM) Tsetlin Machine (ISTM), 2023 International Symposium on the. :1-7 Aug, 2023

Relation: 2023 International Symposium on the Tsetlin Machine (ISTM)

Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions.

Authors: Karamycheva, Svetlana¹ (AUTHOR), Wolf, Yuri I.¹ (AUTHOR), Persi, Erez¹ (AUTHOR), Koonin, Eugene V.¹ (AUTHOR), Makarova, Kira S.¹ (AUTHOR) makarova@ncbi.nlm.nih.gov

Source: Biology Direct. 8/30/2022, Vol. 17 Issue 1, p1-21. 21p.

Subject Terms: *PROKARYOTES, *FISHER discriminant analysis, *AMINO acid sequence, *PROTEIN analysis, *TREE-rings, *GENE families, *ARCHAEBACTERIA, *CHROMOSOME duplication

Segregational drift hinders the evolution of antibiotic resistance on polyploid replicons.

Authors: Garoña, Ana¹, Santer, Mario^1,2, Hülter, Nils F.¹, Uecker, Hildegard², uecker@evolbio.mpg.de, Dagan, Tal¹, uecker@evolbio.mpg.de

Source: PLoS Genetics; 8/3/2023, Vol. 19 Issue 8, p1-24, 24p

GenoFig: a user-friendly application for the visualization and comparison of genomic regions.

Authors: Branger, Maxime¹ (AUTHOR), Leclercq, Sébastien O¹ (AUTHOR) sebastien.leclercq@inrae.fr

Source: Bioinformatics. Jun2024, Vol. 40 Issue 6, p1-4. 4p.

Subject Terms: *PROKARYOTES

Physicochemical origins of prokaryotic and eukaryotic organisms.

Authors: Spitzer, Jan drjspitzer@outlook.com

Source: Journal of Physiology. Jun2024, Vol. 602 Issue 11, p2383-2394. 12p.

Subject Terms: *PROKARYOTES, *EUKARYOTES, *PLANT nutrients, *CELL growth, *CELL cycle

The uncharted territory of NAD+-capped RNA.

Authors: Ma, Quan¹ (AUTHOR), Liu, Jianzhao² (AUTHOR), Hu, Hao^1,3 (AUTHOR) haohu@ucr.edu, Luo, Zisheng^1,4 (AUTHOR) luozisheng@zju.edu.cn

Source: Trends in Cell Biology. May2024, Vol. 34 Issue 5, p355-359. 5p.

Subject Terms: *RNA, *PROKARYOTES, *NICOTINAMIDE, *OXIDATION-reduction reaction, *NAD (Coenzyme), *EUKARYOTES

Microbial community structure and diversity attached to the periphyton in different urban aquatic habitats.

Authors: Yang, Songnan¹ (AUTHOR), Zhou, Huiping¹ (AUTHOR) zhouhp@cczu.edu.cn, Pang, Zhongzheng¹ (AUTHOR), Wang, Yiqun¹ (AUTHOR), Chao, Jianying² (AUTHOR) cjy@nies.org

Source: Environmental Monitoring & Assessment. May2024, Vol. 196 Issue 5, p1-17. 17p.

Subject Terms: *Aquatic habitats, *Sewage purification, *Sewage disposal plants, *Microbial communities, *Periphyton, *Ecosystems, Microbial diversity, Eukaryotes, Prokaryotes

Organic matter content and source is associated with the depth‐dependent distribution of prokaryotes in lake sediments.

Authors: Yan, Dongna¹ (AUTHOR) yandn@ieecas.cn, An, Zhisheng¹ (AUTHOR), Capo, Eric² (AUTHOR) eric.capo@umu.se

Source: Freshwater Biology. Apr2024, Vol. 69 Issue 4, p496-508. 13p.

Subject Terms: *LAKE sediments, *PROKARYOTES, *ARCHAEBACTERIA, *ORGANIC compounds, *CARBON sequestration, *BIOGEOCHEMICAL cycles, *GREENHOUSE gases

Geographic Terms: CHINA

Assessing spacer acquisition rates in E. coli type I-E CRISPR arrays.

Authors: Peach, Luke J., Zhang, Haoyun, Weaver, Brian P., Boedicker, James Q.

Source: Frontiers in Microbiology; 2025, p1-14, 14p

Subject Terms: ESCHERICHIA coli, BACTERIAL population, CRISPRS, IMMUNE response, PROKARYOTES