Comparison of diagnostic performance between Oncomine Dx target test and AmoyDx panel for detecting actionable mutations in lung cancer

Authors: Yuki Nagakubo, Yosuke Hirotsu, Mona Yoshino, Kenji Amemiya, Ryota Saito, Yumiko Kakizaki, Toshiharu Tsutsui, Yoshihiro Miyashita, Taichiro Goto, Masao Omata

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-11 (2024)

Subject Terms: Lung cancer, Diagnostic, Oncomine, Amoy, False positive, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/ff4cfae4f35e4d38a5686f8341916c0a

Clinical and Genetic Characteristics of Early and Advanced Gastric Cancer

Authors: Gi Won Ha, Hong Pil Hwang, Yong Gon Cho, Joonhong Park

Source: Current Issues in Molecular Biology, Vol 46, Iss 2, Pp 1208-1218 (2024)

Subject Terms: gastric cancer, Oncomine focus assay, PIK3CA, KRAS, ERBB2, microsatellite instability, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/1467-3045/46/2/77; https://doaj.org/toc/1467-3037; https://doaj.org/toc/1467-3045

Access URL: https://doaj.org/article/c792bfac699c4c118456e7420bb4a37a

Brief Report: Tepotinib as a Treatment Option in MET Exon 14 Skipping-Positive Lung Cancers—Investigating Discordance Between ArcherMET and the Oncomine Dx Target Test

Authors: Yoshihiro Miyashita, MD, Yosuke Hirotsu, PhD, Yuki Nagakubo, MS, Hiroaki Kobayashi, MD, Makoto Kawaguchi, MD, Koki Hata, MD, Ryota Saito, MD, Yumiko Kakizaki, MD, Toshiharu Tsutsui, PhD, Toshio Oyama, MD, Masao Omata, MD

Source: JTO Clinical and Research Reports, Vol 5, Iss 6, Pp 100679- (2024)

Subject Terms: Lung cancer, MET, Tepotinib, Oncomine, Archer, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2666364324000493; https://doaj.org/toc/2666-3643

Access URL: https://doaj.org/article/02b007faf1354427b6783f95d8c35a84

Comparison between next‐generation sequencing and multiplex polymerase chain reaction assays for nonsmall‐cell lung cancer molecular diagnosis

Authors: Shuji Murakami, Kanako Shinada, Yuka Otsutsumi, Fumiko Komine, Yuan Yuan, Junko Nakamura, Seigo Katakura, Tetsuro Kondo, Terufumi Kato, Tomoyuki Yokose, Haruhiro Saito

Source: Cancer Medicine, Vol 13, Iss 7, Pp n/a-n/a (2024)

Subject Terms: AmoyDx pan lung cancer PCR panel, nonsmall‐cell lung cancer, Oncomine Dx Target Test, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/2045-7634

Access URL: https://doaj.org/article/1402e9a4128a4aaf8f054c648279390c

Evaluation of appropriate conditions for Oncomine DxTT testing of FFPE specimens for driver gene alterations in non–small cell lung cancer

Authors: Eiji Iwama, Hidetaka Yamamoto, Fumihiko Okubo, Kayo Ijichi, Ritsu Ibusuki, Yoshimasa Shiaraishi, Yasuto Yoneshima, Kentaro Tanaka, Yoshinao Oda, Isamu Okamoto

Source: Thoracic Cancer, Vol 14, Iss 23, Pp 2288-2296 (2023)

Subject Terms: driver gene alteration, next‐generation sequencing, non–small cell lung cancer, Oncomine DxTT, tumor cell count, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/1759-7706; https://doaj.org/toc/1759-7714

Access URL: https://doaj.org/article/da4f17f08cc44a4da956eadf1735b65d

Enhancing tumour content and tumour cell count using microdissection contributes to higher detection rate of genetic mutations by next-generation sequencers

Authors: Tamiya, Akihiro ^a, Kanaoka, Kensuke ^a, Inagaki, Yuji ^a, Taniguchi, Yoshihiko ^a, Nakao, Keiko ^a, Matsuda, Yoshinobu ^a, Okishio, Kyoichi ^b, Takeda, Maiko ^{c, d}, Kasai, Takahiko ^e, Shigeki, Shigeki ^{c, ∗}

Source: In Heliyon November 2023 9(11)

Analytical Validation and Clinical Utilization of the Oncomine Comprehensive Assay Plus Panel for Comprehensive Genomic Profiling in Solid Tumors

Authors: Catherine I. Dumur, Ramakrishnan Krishnan, Jorge A. Almenara, Kathleen E. Brown, Kailyn R. Dugan, Christiana Farni, Fatima Z. Ibrahim, Naomi A. Sanchez, Sumra Rathore, Dinesh Pradhan, Jonathan H. Hughes

Source: Journal of Molecular Pathology, Vol 4, Iss 2, Pp 109-127 (2023)

Subject Terms: targeted NGS, Oncomine Comprehensive Assay Plus, comprehensive genomic profiling, microsatellite instability, tumor mutational burden, homologous recombination deficiency, Pathology, RB1-214

File Description: electronic resource

Relation: https://www.mdpi.com/2673-5261/4/2/12; https://doaj.org/toc/2673-5261

Access URL: https://doaj.org/article/8d8880e63def4712a1fac7c08739e665

Clinical sequencing identifies potential actionable alterations in a high rate of urachal and primary bladder adenocarcinomas

Authors: Melinda Varadi, Nikolett Nagy, Henning Reis, Boris Hadaschik, Christian Niedworok, Orsolya Modos, Attila Szendroi, Jason Ablat, Peter C. Black, David Keresztes, Anita Csizmarik, Csilla Olah, Nadine T. Gaisa, Andras Kiss, Jozsef Timar, Erika Toth, Erzsebet Csernak, Arpad Gerstner, Vinay Mittal, Sofia Karkampouna, Marianna Kruithof de Julio, Balazs Gyorffy, Gabor Bedics, Michael Rink, Margit Fisch, Peter Nyirady, Tibor Szarvas

Source: Cancer Medicine, Vol 12, Iss 7, Pp 9041-9054 (2023)

Subject Terms: molecular genetics, Oncomine, primary bladder adenocarcinoma, targeted therapy, urachal cancer, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/2045-7634

Access URL: https://doaj.org/article/e41fec3667254bd390a37fade443482d

Retrospective Analysis to Optimize the Detection of MET Exon 14 Skipping Mutations in Non-Small Cell Lung Cancer

Authors: Jang-Jih Lu, Shu-Hui Tsai, Lee-Chung Lin, Tzong-Shi Chiueh

Source: Diagnostics, Vol 14, Iss 11, p 1110 (2024)

Subject Terms: METex14, oncomine focus assay, reverse transcription PCR, Medicine (General), R5-920

File Description: electronic resource

Relation: https://www.mdpi.com/2075-4418/14/11/1110; https://doaj.org/toc/2075-4418

Access URL: https://doaj.org/article/8b824107a9cd422186fdac2e60101b0e

Comparison of next‐generation sequencing and cobas EGFR mutation test v2 in detecting EGFR mutations

Authors: Shuji Murakami, Tomoyuki Yokose, Kanako Shinada, Testuya Isaka, Kengo Katakura, Ryouta Ushio, Tetsuro Kondo, Terufumi Kato, Hiroyuki Ito, Haruhiro Saito

Source: Thoracic Cancer, Vol 13, Iss 22, Pp 3217-3224 (2022)

Subject Terms: cobas EGFR mutation test v2, epidermal growth factor receptor gene (EGFR) mutation, next‐generation sequencing, non‐small cell lung cancer, oncomine dx target test, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/1759-7706; https://doaj.org/toc/1759-7714

Access URL: https://doaj.org/article/9e33169d510549aeb20e5bc54e6125f5

Comparison of the analytical performance of the Oncomine dx target test focusing on bronchoscopic biopsy forceps size in non‐small cell lung cancer

Authors: Tadashi Sakaguchi, Yoichi Nishii, Akemi Iketani, Seiya Esumi, Maki Esumi, Kazuki Furuhashi, Yuki Nakamura, Yuta Suzuki, Kentaro Ito, Kentaro Fujiwara, Koji Katsuta, Osamu Taguchi, Osamu Hataji

Source: Thoracic Cancer, Vol 13, Iss 10, Pp 1449-1456 (2022)

Subject Terms: endobronchial biopsy, next‐generation sequencing, non‐small cell lung cancer, Oncomine dx target test, transbronchial biopsy, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/1759-7706; https://doaj.org/toc/1759-7714

Access URL: https://doaj.org/article/ab4d065b858d4fd2b23c2edb77b68972

FoundationOne CDx detected an uncovered variant of epidermal growth factor receptor exon 19 deletion by Oncomine Dx target test in a patient with lung adenocarcinoma

Authors: Hiroki Takahashi, Hirokazu Ogino, Hiroki Bando, Atsushi Mitsuhashi, Yuki Tsukazaki, Yohei Yabuki, Ryohiko Ozaki, Hiroto Yoneda, Seidai Sato, Masaki Hanibuchi, Yasuhiko Nishioka

Source: Respiratory Medicine Case Reports, Vol 45, Iss , Pp 101893- (2023)

Subject Terms: Lung adenocarcinoma, Oncomine dx target test, Comprehensive genomic profiling, FoundationOne CDx, Driver mutations, Epidermal growth factor receptor, Diseases of the respiratory system, RC705-779

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2213007123000886; https://doaj.org/toc/2213-0071

Access URL: https://doaj.org/article/73c471de01134955b36aa64892c73abc

Bioinformatics screening of biomarkers related to liver cancer

Authors: Ye-Cheng Wang, Zhen-Bo Tian, Xu-Qing Tang

Source: BMC Bioinformatics, Vol 22, Iss S3, Pp 1-11 (2021)

Subject Terms: Bioinformatics analysis, Differential expressed genes, PPI, Oncomine, Survival curve analysis, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/ba6a29593bfc45c6afc2ed48ac19be9a

In silico analysis of differentially expressed genesets in metastatic breast cancer identifies potential prognostic biomarkers

Authors: Jongchan Kim

Source: World Journal of Surgical Oncology, Vol 19, Iss 1, Pp 1-15 (2021)

Subject Terms: Breast cancer, Metastatic breast cancer, Prognosis, Oncomine, Gene ontology, Biomarkers, Surgery, RD1-811, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/1477-7819

Access URL: https://doaj.org/article/2c7d884e25794828996b62ef779f7b03

Overexpression of DSCR1 prevents proliferation and predicts favorable prognosis in colorectal cancer patients

Authors: Wen-Xiang Li, Jia-Jia Zheng, Gang Zhao, Chen-Tao LYU, Wei-Qi Lu

Source: World Journal of Surgical Oncology, Vol 19, Iss 1, Pp 1-10 (2021)

Subject Terms: Colorectal cancer, DSCR1, Immunohistochemistry, Prognosis, Oncomine, Surgery, RD1-811, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/1477-7819

Access URL: https://doaj.org/article/a26884020d2644a2a57e0adc4043d971

Comparison of the analytical performance between the Oncomine Dx Target Test and a conventional single gene test for epidermal growth factor receptor mutation in non‐small cell lung cancer

Authors: Tadashi Sakaguchi, Akemi Iketani, Kazuki Furuhashi, Yuki Nakamura, Yuta Suzuki, Kentaro Ito, Kentaro Fujiwara, Yoichi Nishii, Koji Katsuta, Osamu Taguchi, Osamu Hataji

Source: Thoracic Cancer, Vol 12, Iss 4, Pp 462-467 (2021)

Subject Terms: EGFR mutations, next‐generation sequencing, non‐small cell lung cancer, Oncomine Dx Target Test, PNA‐LNA PCR clamp, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/1759-7706; https://doaj.org/toc/1759-7714

Access URL: https://doaj.org/article/16f0181410ad4c269a0345a2fc6df192

Feasibility of next‐generation sequencing test for patients with advanced NSCLC in clinical practice

Authors: Ryo Ariyasu, Ken Uchibori, Hironori Ninomiya, Shinsuke Ogusu, Ryosuke Tsugitomi, Ryo Manabe, Hiroaki Sakamaoto, Takehiro Tozuka, Hiroshi Yoshida, Yoshiaki Amino, Satoru Kitazono, Noriko Yanagitani, Kengo Takeuchi, Makoto Nishio

Source: Thoracic Cancer, Vol 12, Iss 4, Pp 504-511 (2021)

Subject Terms: ALK‐immunohistochemistry, Cobas EGFR mutation test, Oncomine Dx Target test, real‐world analysis, turnaround time, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/1759-7706; https://doaj.org/toc/1759-7714

Access URL: https://doaj.org/article/7b7ef5a8795d4eb2b4b8ec0478f05a2a

Analysis of expression and prognosis of KLK7 in ovarian cancer

Authors: Chen Erhua, Zhu Huifang, Yang Yue, Wang Ling, Zhang Jianhua, Han Yonghong, Liu Xiang

Source: Open Medicine, Vol 15, Iss 1, Pp 932-939 (2020)

Subject Terms: ovarian cancer, klk7, oncomine, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/2391-5463

Access URL: https://doaj.org/article/4bd549d093c743f9a8456d19bdd7c487

Pathological criteria for multiplex gene-panel testing using next-generation sequencing in non-small cell lung cancer

Authors: Shihoko Mizote, Mai Matsumura, Motoki Sekiya, Misaki Sugiyama, Akimasa Sekine, Nobuaki Kobayashi, Toshiaki Kataoka, Hiromichi Iwashita, Koji Okudela

Source: Cancer Treatment and Research Communications, Vol 32, Iss , Pp 100614- (2022)

Subject Terms: Biopsy, Lung cancer, Next-generation sequencing, Molecular diagnostic testing, Oncomine DxTT, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2468294222001058; https://doaj.org/toc/2468-2942

Access URL: https://doaj.org/article/1725cfaea6ec455286d747f150a6a128

Prognostic significance of CD276 in non-small cell lung cancer

Authors: Zhang Changgong, Hao Xuezhi

Source: Open Medicine, Vol 14, Iss 1, Pp 805-812 (2019)

Subject Terms: non-small cell lung cancer, cd276, oncomine, prognosis, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/2391-5463

Access URL: https://doaj.org/article/d17041eecfcc4859b6aab62ede866f02