Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance

Authors: Ágnes Becsei, Alessandro Fuschi, Saria Otani, Ravi Kant, Ilja Weinstein, Patricia Alba, József Stéger, Dávid Visontai, Christian Brinch, Miranda de Graaf, Claudia M. E. Schapendonk, Antonio Battisti, Alessandra De Cesare, Chiara Oliveri, Fulvia Troja, Tarja Sironen, Olli Vapalahti, Frédérique Pasquali, Krisztián Bányai, Magdolna Makó, Péter Pollner, Alessandra Merlotti, Marion Koopmans, Istvan Csabai, Daniel Remondini, Frank M. Aarestrup, Patrick Munk

Source: Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/74e53418d5e24d359d1952aad059b075

Convalescent plasma therapy for COVID-19 – Donor selection strategies and establishment of a plasma bank

Authors: Mikael Kajova, Tamim Khawaja, Iris Levonen, Jukka-Pekka Pietilä, Jenni Virtanen, Sari H. Pakkanen, Hanna Välimaa, Arttu Nousiainen, Jussi Hepojoki, Tarja Sironen, Antti Vierikko, Jarkko Ihalainen, Olli Vapalahti, Anu Kantele

Source: New Microbes and New Infections, Vol 62, Iss , Pp 101525- (2024)

Subject Terms: COVID-19, SARS-CoV-2, Convalescent plasma, Plasma bank, Neutralising antibodies, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2052297524003093; https://doaj.org/toc/2052-2975

Access URL: https://doaj.org/article/4c832eee5dcf4fef9977fa7ccb6c94b1

Dynamin independent endocytosis is an alternative cell entry mechanism for multiple animal viruses.

Authors: Ravi Ojha, Anmin Jiang, Elina Mäntylä, Tania Quirin, Naphak Modhira, Robert Witte, Arnaud Gaudin, Lisa De Zanetti, Rachel Sarah Gormal, Maija Vihinen-Ranta, Jason Mercer, Maarit Suomalainen, Urs F Greber, Yohei Yamauchi, Pierre-Yves Lozach, Ari Helenius, Olli Vapalahti, Paul Young, Daniel Watterson, Frédéric A Meunier, Merja Joensuu, Giuseppe Balistreri

Source: PLoS Pathogens, Vol 20, Iss 11, p e1012690 (2024)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/7d80452f88364b7eabad53af110c4b45

N-alkylation of amines for the synthesis of potential antiviral agents: A structural modification approach

Authors: Nadia Arrousse, Elyor Berdimurodov, Mariia Bogacheva, Fathiah Zakham, Soukaina Esslali, Sghir EL Kadiri, Mustapha Taleb, Olli Vapalahti

Source: Heliyon, Vol 10, Iss 19, Pp e38587- (2024)

Subject Terms: Chloroquine, Drug synthesis, Molecular docking, Pharmacokinetic properties, Science (General), Q1-390, Social sciences (General), H1-99

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S240584402414618X; https://doaj.org/toc/2405-8440

Access URL: https://doaj.org/article/321af51b8e5c4d7abeec4c6514dfe6d1

Circulating mucosal-like IgA responses increase with severity of Puumala orthohantavirus-caused hemorrhagic fever with renal syndrome

Authors: Luz E. Cabrera, Cienna Buckner, Veronica Then, Sanna Mäki, Olli Vapalahti, Antti Vaheri, Jussi Hepojoki, Johanna Tietäväinen, Satu Mäkelä, Jukka Mustonen, Tomas Strandin

Source: Frontiers in Immunology, Vol 15 (2024)

Subject Terms: HFRS, hantavirus, IgA, mucosal immunity, neutrophils, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2024.1480041/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/e6a9904351c1449caff1047639d20e12

Infective SARS-CoV-2 in Skull Sawdust at Autopsy, Finland

Authors: Jonas N. Kantonen, Suvi Kuivanen, Teemu Smura, Henri Puttonen, Eliisa Kekäläinen, Antti Sajantila, Liisa Myllykangas, Anu Kantele, Olli Vapalahti, Mikko I. Mäyränpää, Olli Carpén

Source: Emerging Infectious Diseases, Vol 30, Iss 8, Pp 1735-1737 (2024)

Subject Terms: COVID-19, SARS-CoV-2, respiratory infections, viruses, zoonoses, tissue distribution, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/30/8/24-0145_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/51d3682f92744db0944d80a414841882

Phylogenetic Characterization of Orthohantavirus dobravaense (Dobrava Virus)

Authors: Mert Erdin, Ceylan Polat, Teemu Smura, Sercan Irmak, Ortac Cetintas, Muhsin Cogal, Faruk Colak, Ahmet Karatas, Mustafa Sozen, Ferhat Matur, Olli Vapalahti, Tarja Sironen, Ibrahim Mehmet Ali Oktem

Source: Emerging Infectious Diseases, Vol 30, Iss 4, Pp 779-782 (2024)

Subject Terms: Orthohantavirus dobravaense, Dobrava virus, orthohantaviruses, viruses, zoonoses, airborne pathogens, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/30/4/23-0912_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/d7883ca2adc64ab6babd7d0cbf276396

The assembly of neutrophil inflammasomes during COVID-19 is mediated by type I interferons

Authors: Luz E. Cabrera, Suvi T. Jokiranta, Sanna Mäki, Simo Miettinen, Ravi Kant, Lauri Kareinen, Tarja Sironen, Jukka-Pekka Pietilä, Anu Kantele, Eliisa Kekäläinen, Hanna Lindgren, Pirkko Mattila, Anja Kipar, Olli Vapalahti, Tomas Strandin

Source: PLoS Pathogens, Vol 20, Iss 8 (2024)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11340896/?tool=EBI; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/4f00a3dbefbb448fa61285c4f40ae6f5

Maturing neutrophils of lower density associate with thrombocytopenia in Puumala orthohantavirus-caused hemorrhagic fever with renal syndrome

Authors: Luz E. Cabrera, Johanna Tietäväinen, Suvi T. Jokiranta, Satu Mäkelä, Antti Vaheri, Jukka Mustonen, Olli Vapalahti, Mari Kanerva, Tomas Strandin

Source: Frontiers in Immunology, Vol 15 (2024)

Subject Terms: ortohantavirus, Hemorrhagic Fever with Renal Syndrome, neutrophils, granulopoiesis, low-density granulocytes, RNA-seq, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2024.1419787/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/f7cefbbd26e74301a8b96906d0789b61

Author Correction: Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance

Authors: Ágnes Becsei, Alessandro Fuschi, Saria Otani, Ravi Kant, Ilja Weinstein, Patricia Alba, József Stéger, Dávid Visontai, Christian Brinch, Miranda de Graaf, Claudia M. E. Schapendonk, Antonio Battisti, Alessandra De Cesare, Chiara Oliveri, Fulvia Troja, Tarja Sironen, Olli Vapalahti, Frédérique Pasquali, Krisztián Bányai, Magdolna Makó, Péter Pollner, Alessandra Merlotti, Marion Koopmans, Istvan Csabai, Daniel Remondini, Frank M. Aarestrup, Patrick Munk

Source: Nature Communications, Vol 15, Iss 1, Pp 1-1 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/8b2809bf1eaa4b9683f6410d3982d0c3

Human-derived air–liquid interface cultures decipher Alzheimer’s disease–SARS-CoV-2 crosstalk in the olfactory mucosa

Authors: Muhammad Ali Shahbaz, Suvi Kuivanen, Riikka Lampinen, Laura Mussalo, Tomáš Hron, Táňa Závodná, Ravi Ojha, Zdeněk Krejčík, Liudmila Saveleva, Numan Ahmad Tahir, Juho Kalapudas, Anne M. Koivisto, Elina Penttilä, Heikki Löppönen, Prateek Singh, Jan Topinka, Olli Vapalahti, Sweelin Chew, Giuseppe Balistreri, Katja M. Kanninen

Source: Journal of Neuroinflammation, Vol 20, Iss 1, Pp 1-23 (2023)

Subject Terms: COVID-19, Alzheimer’s disease, Neurological manifestations, SARS-CoV-2, Olfactory, Anosmia, Neurology. Diseases of the nervous system, RC346-429

File Description: electronic resource

Relation: https://doaj.org/toc/1742-2094

Access URL: https://doaj.org/article/343edc01917c4050b01c3190ca3636ea

Nanobody engineering for SARS-CoV-2 neutralization and detection

Authors: Liina Hannula, Suvi Kuivanen, Jonathan Lasham, Ravi Kant, Lauri Kareinen, Mariia Bogacheva, Tomas Strandin, Tarja Sironen, Jussi Hepojoki, Vivek Sharma, Petri Saviranta, Anja Kipar, Olli Vapalahti, Juha T. Huiskonen, Ilona Rissanen

Source: Microbiology Spectrum, Vol 12, Iss 4 (2024)

Subject Terms: SARS-CoV-2, nanobody, virus neutralization, protein engineering, diagnostics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/cecbf8f257de4f2482e0413c26276bab

Partial Genome Characterization of Novel Parapoxvirus in Horse, Finland

Authors: Jenni Virtanen, Maria Hautaniemi, Lara Dutra, Ilya Plyusnin, Katja Hautala, Teemu Smura, Olli Vapalahti, Tarja Sironen, Ravi Kant, Paula M. Kinnunen

Source: Emerging Infectious Diseases, Vol 29, Iss 9, Pp 1941-1944 (2023)

Subject Terms: parapoxvirus, viruses, zoonoses, taxonomic classification, high-throughput nucleotide sequencing, horses, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/29/9/23-0049_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/b1a22ba709364b05846364298efcb032

Molecular detection of pathogens from ticks collected from dogs and cats at veterinary clinics in Finland

Authors: Fathiah Zakham, Essi M. Korhonen, Petteri T. Puonti, Robert S. Castrén, Ruut Uusitalo, Teemu Smura, Ravi Kant, Olli Vapalahti, Tarja Sironen, Paula M. Kinnunen

Source: Parasites & Vectors, Vol 16, Iss 1, Pp 1-10 (2023)

Subject Terms: Anaplasma spp., Babesia spp., Borrelia spp., Candidatus Neoehrlichia mikurensis, Ehrlichia canis, Ixodid ticks, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://doaj.org/toc/1756-3305

Access URL: https://doaj.org/article/3da56b75e5534a6199f59a2fd98ce412

Mucosal-Associated Invariant T Cells are not susceptible in vitro to SARS-CoV-2 infection but accumulate into the lungs of COVID-19 patients

Authors: Xiaobo Huang, Jonas Kantonen, Kirsten Nowlan, Ngoc Anh Nguyen, Suvi T. Jokiranta, Suvi Kuivanen, Nelli Heikkilä, Shamita Mahzabin, Anu Kantele, Olli Vapalahti, Liisa Myllykangas, Santtu Heinonen, Mikko I. Mäyränpää, Tomas Strandin, Eliisa Kekäläinen

Source: Virus Research, Vol 341, Iss , Pp 199315- (2024)

Subject Terms: Mucosal Associated Invariant T cells, SARS-CoV-2, Lymphopenia, COVID-19, Viral challenge, Microbiology, QR1-502, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S016817022400008X; https://doaj.org/toc/1872-7492

Access URL: https://doaj.org/article/a896fc2014e74f6486d979727fa98e2c

Stable Levels of Antibodies Against Unrelated Toxoid Vaccines After COVID-19: COVID-19 Infection Does Not Affect Toxoid Vaccine Antibody Levels

Authors: Suvi T. Jokiranta, Simo Miettinen, Sami Salonen, Lauri Kareinen, Ruut Uusitalo, Essi M. Korhonen, Jenni Virtanen, Ilkka Kivistö, Kirsi Aaltonen, Dina A. Mosselhy, Tinja Lääveri, Anu Kantele, T. Petteri Arstila, Hanna Jarva, Olli Vapalahti, Santtu Heinonen, Eliisa Kekäläinen

Source: Pathogens and Immunity, Vol 8, Iss 2 (2024)

Subject Terms: COVID-19, Vaccines, Antibodies, Post-acute COVID-19 syndrome, Immunity, Humoral, Pathology, RB1-214, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.paijournal.com/index.php/paijournal/article/view/627; https://doaj.org/toc/2469-2964

Access URL: https://doaj.org/article/99ac0028a0f34caaa07245c0d1d1d384

Long COVID-associated symptoms prevalent in both SARS-CoV-2 positive and negative individuals: A prospective follow-up study

Authors: Anu Kantele, Juuso Paajanen, Jukka-Pekka Pietilä, Olli Vapalahti, Sari H. Pakkanen, Tinja Lääveri

Source: New Microbes and New Infections, Vol 56, Iss , Pp 101209- (2024)

Subject Terms: SARS-CoV-2, Long covid, Follow-up study, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2052297523001282; https://doaj.org/toc/2052-2975

Access URL: https://doaj.org/article/a9c3666dc7214441b925d894256240fd

No Substantial Histopathologic Changes in Mops condylurus Bats Naturally Infected with Bombali Virus, Kenya

Authors: Lauri Kareinen, Niina Airas, Sara T. Kotka, Moses M. Masika, Kirsi Aaltonen, Omu Anzala, Joseph Ogola, Paul W. Webala, Olli Vapalahti, Tarja Sironen, Kristian M. Forbes

Source: Emerging Infectious Diseases, Vol 29, Iss 5, Pp 1029-1032 (2023)

Subject Terms: Ebola, Bombali virus, Mops condylurus, viruses, zoonoses, bat pathology, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/29/5/22-1336_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/442fae74dec0441cbd78c502198e6bf1

Intrahost Monkeypox Virus Genome Variation in Patient with Early Infection, Finland, 2022

Authors: Hanna Vauhkonen, Hannimari Kallio-Kokko, Eija Hiltunen-Back, Lasse Lönnqvist, Jaana Leppäaho-Lakka, Laura Mannonen, Ravi Kant, Tarja Sironen, Satu Kurkela, Maija Lappalainen, Tomaž Mark Zorec, Samo Zakotnik, Doroteja Vlaj, Miša Korva, Tatjana Avšič-Županc, Mario Poljak, Teemu Smura, Olli Vapalahti

Source: Emerging Infectious Diseases, Vol 29, Iss 3, Pp 649-652 (2023)

Subject Terms: Monkeypox virus, outbreak, intrahost variation, genomic sequence, APOBEC3-associated mutations, viruses, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/29/3/22-1388_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/3409eda45db041e0a1f66018b1ac4693

Intranasal trimeric sherpabody inhibits SARS-CoV-2 including recent immunoevasive Omicron subvariants

Authors: Anna R. Mäkelä, Hasan Uğurlu, Liina Hannula, Ravi Kant, Petja Salminen, Riku Fagerlund, Sanna Mäki, Anu Haveri, Tomas Strandin, Lauri Kareinen, Jussi Hepojoki, Suvi Kuivanen, Lev Levanov, Arja Pasternack, Rauno A. Naves, Olli Ritvos, Pamela Österlund, Tarja Sironen, Olli Vapalahti, Anja Kipar, Juha T. Huiskonen, Ilona Rissanen, Kalle Saksela

Source: Nature Communications, Vol 14, Iss 1, Pp 1-12 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/326654b56d2c4bd89b56074f0855fd2f