Evolutionary and Epidemiological Insights from Historical and Modern Genomes of Xanthomonas oryzae pv. oryzicola, the Causal Agent of Bacterial Leaf Streak of Rice

Authors: Mathilde Hutin, Sara Carpenter, Shivrajani Baruah, Paola Campos, Karine Boyer, Dodelys Andriantsimialona, Solo Hery Rapanarivo, Olivier Pruvost, Nathalie Becker, Lionel Gagnevin, Ralf Koebnik, Boris Szurek, Ousmane Koita, Adam J. Bogdanove, Adrien Rieux

Source: Molecular Plant-Microbe Interactions, Vol 37, Iss 12, Pp 814-818 (2024)

Subject Terms: ancient genomics, avirulence factors, bacterial dissemination routes, bacterial leaf streak, Xanthomonas oryzae pv. oryzicola (Xoc), Microbiology, QR1-502, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/0894-0282; https://doaj.org/toc/1943-7706

Access URL: https://doaj.org/article/50bd9de679884727ab78b393e0b9056a

Phylodynamic Insights into Global Emergence and Diversification of the Tomato Pathogen Xanthomonas hortorum pv. gardneri

Authors: Mustafa O. Jibrin, Anuj Sharma, Carla N. Mavian, Sujan Timilsina, Amandeep Kaur, Fernanda Iruegas-Bocardo, Neha Potnis, Gerald V. Minsavage, Teresa A. Coutinho, Tom C. Creswell, Daniel S. Egel, David M. Francis, Misrak Kebede, Sally A. Miller, María J. Montelongo, Ekaterina Nikolaeva, María J. Pianzzola, Olivier Pruvost, Alice M. Quezado-Duval, Gail E. Ruhl, Vou M. Shutt, Elizabeth Maynard, Diego C. Maeso, María I. Siri, Cheryl L. Trueman, Marco Salemi, Gary E. Vallad, Pamela D. Roberts, Jeffrey B. Jones, Erica M. Goss

Source: Molecular Plant-Microbe Interactions, Vol 37, Iss 10, Pp 712-720 (2024)

Subject Terms: bacterial plant pathogen, genome evolution, phylodynamics, Microbiology, QR1-502, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/0894-0282; https://doaj.org/toc/1943-7706

Access URL: https://doaj.org/article/c6d6c8a18c2548049fe9384b82849e53

Genetic Signatures of Contrasted Outbreak Histories of 'Candidatus Liberibacter asiaticus', the Bacterium That Causes Citrus Huanglongbing, in Three Outermost Regions of the European Union

Authors: Olivier Pruvost, Karine Boyer, Frédéric Labbé, Marine Weishaar, Anaïs Vynisale, Claire Melot, Cécile Hoareau, Gilles Cellier, Virginie Ravigné

Source: Evolutionary Applications, Vol 17, Iss 12, Pp n/a-n/a (2024)

Subject Terms: bacterial crop disease, miniature inverted‐repeat transposable elements, molecular epidemiology, population structure, prophage, tandem repeats, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/1752-4571

Access URL: https://doaj.org/article/706ee37a0649446da1c53f8471cdc3d9

Comparative transcriptomics reveals a highly polymorphic Xanthomonas HrpG virulence regulon

Authors: Thomas Quiroz Monnens, Brice Roux, Sébastien Cunnac, Erika Charbit, Sébastien Carrère, Emmanuelle Lauber, Marie-Françoise Jardinaud, Armelle Darrasse, Matthieu Arlat, Boris Szurek, Olivier Pruvost, Marie-Agnès Jacques, Lionel Gagnevin, Ralf Koebnik, Laurent D. Noël, Alice Boulanger

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-17 (2024)

Subject Terms: Xanthomonas, HrpG, Type III secretion system, Regulon diversity, Transcriptome sequencing, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/619e933fdeb04f308c661e08be73034c

Loop-Mediated Isothermal Amplification Assays for Rapid Detection of Ralstonia solanacearum Species Complex and Phylotype I in Solanaceous Crops

Authors: Isabelle Robène, Véronique Maillot-Lebon, Yann Pecrix, Santatra Ravelomanantsoa, Delphine Massé, Emmanuel Jouen, Hasina Rasoamanana, Babbitha Fenelon, Stéphanie Javegny, Marc Seguin, Sylvain Lebon, Stéphane Poussier, Olivier Pruvost

Source: PhytoFrontiers, Vol 3, Iss 3, Pp 582-593 (2023)

Subject Terms: detection, diagnosis, genomes, LAMP, phylotype I, point-of-care testing, Plant culture, SB1-1110, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/2690-5442

Access URL: https://doaj.org/article/0d307ac0911748d18cad396fdc89515c

Herbarium specimen sequencing allows precise dating of Xanthomonas citri pv. citri diversification history

Authors: Paola E. Campos, Olivier Pruvost, Karine Boyer, Frederic Chiroleu, Thuy Trang Cao, Myriam Gaudeul, Cláudia Baider, Timothy M. A. Utteridge, Nathalie Becker, Adrien Rieux, Lionel Gagnevin

Source: Nature Communications, Vol 14, Iss 1, Pp 1-13 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/c228a7b35a24497096e13e5a7dd2b70b

Genome-Informed Multiplex Conventional PCR for Identification and Differentiation of Xanthomonas citri pv. citri Subpathotypes, the Causal Agents of Asiatic Citrus Canker

Authors: Jarred Yasuhara-Bell, Gem Santillana, Isabelle Robène, Olivier Pruvost, Mark Nakhla, Vessela Mavrodieva

Source: PhytoFrontiers, Vol 3, Iss 1, Pp 235-245 (2023)

Subject Terms: Asiatic citrus canker, diagnostic, differentiation, discrimination, identification, pathotype, Plant culture, SB1-1110, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/2690-5442

Access URL: https://doaj.org/article/a60e37e6530341148a2b59ad6a08f03a

Suspicions of two bridgehead invasions of Xylella fastidiosa subsp. multiplex in France

Authors: Enora Dupas, Karine Durand, Adrien Rieux, Martial Briand, Olivier Pruvost, Amandine Cunty, Nicolas Denancé, Cécile Donnadieu, Bruno Legendre, Céline Lopez-Roques, Sophie Cesbron, Virginie Ravigné, Marie-Agnès Jacques

Source: Communications Biology, Vol 6, Iss 1, Pp 1-13 (2023)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/ba632599595f400ab3ac1e22baebfd6e

Molecular epidemiology of the citrus bacterial pathogen Xanthomonas citri pv. citri from the Arabian Peninsula reveals a complex structure of specialist and generalist strains

Authors: Olivier Pruvost, Yasser Eid Ibrahim, Anwar Hamoud Sharafaddin, Karine Boyer, Arya Widyawan, Mohammed Ali Al‐Saleh

Source: Evolutionary Applications, Vol 15, Iss 9, Pp 1423-1435 (2022)

Subject Terms: bacterial disease, citrus, host specialization, microsatellites, minisatellites, molecular epidemiology, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/1752-4571

Access URL: https://doaj.org/article/d0ef56fa9d514ca2ac1ee31fd97b1b13

A minisatellite-based MLVA for deciphering the global epidemiology of the bacterial cassava pathogen Xanthomonas phaseoli pv. manihotis.

Authors: Leidy Rache, Laurence Blondin, Paula Diaz Tatis, Carolina Flores, Andrea Camargo, Moussa Kante, Issa Wonni, Camilo López, Boris Szurek, Stephane Dupas, Olivier Pruvost, Ralf Koebnik, Silvia Restrepo, Adriana Bernal, Christian Vernière

Source: PLoS ONE, Vol 18, Iss 5, p e0285491 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/11b635e00adf473dbff4e121bbaeb3ad

Development and comparative validation of genomic-driven PCR-based assays to detect Xanthomonas citri pv. citri in citrus plants

Authors: Isabelle Robène, Véronique Maillot-Lebon, Aude Chabirand, Aurélie Moreau, Nathalie Becker, Amal Moumène, Adrien Rieux, Paola Campos, Lionel Gagnevin, Myriam Gaudeul, Claudia Baider, Fréderic Chiroleu, Olivier Pruvost

Source: BMC Microbiology, Vol 20, Iss 1, Pp 1-13 (2020)

Subject Terms: Asiatic Citrus canker, Surveillance, Real-time quantitative PCR, Diagnostics, Cycle cut-off, Ancient DNA, Microbiology, QR1-502

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12866-020-01972-8; https://doaj.org/toc/1471-2180

Access URL: https://doaj.org/article/7262f36b45d343bf874219f1c69ec0a6

CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen Xanthomonas citri pv. citri

Authors: Kwanho Jeong, Alejandra Muñoz-Bodnar, Nathalia Arias Rojas, Lucie Poulin, Luis Miguel Rodriguez-R, Lionel Gagnevin, Christian Vernière, Olivier Pruvost, Ralf Koebnik

Source: BMC Genomics, Vol 20, Iss 1, Pp 1-19 (2019)

Subject Terms: Molecular typing, Genetic diversity, Clustered regularly interspaced short palindromic repeats, Variable numbers of tandem repeats, Spoligotyping, Epidemiology, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/660b42a01d574d35beac133d1a25ad1b

Deciphering how plant pathogenic bacteria disperse and meet: Molecular epidemiology of Xanthomonas citri pv. citri at microgeographic scales in a tropical area of Asiatic citrus canker endemicity

Authors: Olivier Pruvost, Karine Boyer, Virginie Ravigné, Damien Richard, Christian Vernière

Source: Evolutionary Applications, Vol 12, Iss 8, Pp 1523-1538 (2019)

Subject Terms: genotyping, microsatellites, plant bacterial diseases, spatial structure, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/1752-4571

Access URL: https://doaj.org/article/d7e01900a2c54a2bbe175e13a1c0c539

First historical genome of a crop bacterial pathogen from herbarium specimen: Insights into citrus canker emergence.

Authors: Paola E Campos, Clara Groot Crego, Karine Boyer, Myriam Gaudeul, Claudia Baider, Damien Richard, Olivier Pruvost, Philippe Roumagnac, Boris Szurek, Nathalie Becker, Lionel Gagnevin, Adrien Rieux

Source: PLoS Pathogens, Vol 17, Iss 7, p e1009714 (2021)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/5fef0c17932c4c3bb814f9f94b3cbaab

Pathotyping Citrus Ornamental Relatives with Xanthomonas citri pv. citri and X. citri pv. aurantifolii Refines Our Understanding of Their Susceptibility to These Pathogens

Authors: Grazia Licciardello, Paola Caruso, Patrizia Bella, Claudine Boyer, Malcolm W. Smith, Olivier Pruvost, Isabelle Robene, Jaime Cubero, Vittoria Catara

Source: Microorganisms, Vol 10, Iss 5, p 986 (2022)

Subject Terms: citrus bacterial canker, Rutaceae, ornamental plants, hyperplastic tissue, pathotype, host–plant interaction, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/10/5/986; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/41c69b1f44d7435aa2491366724f323e

Trends in Molecular Diagnosis and Diversity Studies for Phytosanitary Regulated Xanthomonas

Authors: Vittoria Catara, Jaime Cubero, Joël F. Pothier, Eran Bosis, Claude Bragard, Edyta Đermić, Maria C. Holeva, Marie-Agnès Jacques, Francoise Petter, Olivier Pruvost, Isabelle Robène, David J. Studholme, Fernando Tavares, Joana G. Vicente, Ralf Koebnik, Joana Costa

Source: Microorganisms, Vol 9, Iss 4, p 862 (2021)

Subject Terms: Xanthomonas, molecular methods, quarantine pests, regulated non-quarantine pests, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/9/4/862; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/3c7691b22b99446d93589c5e5dc58b48

Diversity and Geographical Structure of Xanthomonas citri pv. citri on Citrus in the South West Indian Ocean Region

Authors: Olivier Pruvost, Damien Richard, Karine Boyer, Stéphanie Javegny, Claudine Boyer, Frédéric Chiroleu, Pierre Grygiel, Evelyne Parvedy, Isabelle Robène, Véronique Maillot-Lebon, Azali Hamza, Kanta Kumar Lobin, Marc Naiken, Christian Vernière

Source: Microorganisms, Vol 9, Iss 5, p 945 (2021)

Subject Terms: molecular epidemiology, citrus, Asiatic canker, copper resistance, aggressiveness, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/9/5/945; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/02f595006a3d473fb1ab5ebd320a1fbe

Molecular Epidemiology of Bacterial Wilt in the Madagascar Highlands Caused by Andean (Phylotype IIB-1) and African (Phylotype III) Brown Rot Strains of the Ralstonia solanacearum Species Complex

Authors: Santatra Ravelomanantsoa, Christian Vernière, Adrien Rieux, Laurent Costet, Frédéric Chiroleu, Sandrine Arribat, Gilles Cellier, Olivier Pruvost, Stéphane Poussier, Isabelle Robène, Fabien Guérin, Philippe Prior

Source: Frontiers in Plant Science, Vol 8 (2018)

Subject Terms: Ralstonia solanacearum, genetic diversity, MLVA, population structure, Madagascar, Plant culture, SB1-1110

File Description: electronic resource

Relation: http://journal.frontiersin.org/article/10.3389/fpls.2017.02258/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/a32f73642349431ba3c7163e5a18ff32

Citrus junos as a host of citrus bacterial canker

Authors: EFSA Panel on Plant Health (PLH), Michael Jeger, David Caffier, Thierry Candresse, Elisavet Chatzivassiliou, Katharina Dehnen‐Schmutz, Gianni Gilioli, Jean‐Claude Grégoire, Josep Anton Jaques Miret, Alan MacLeod, Maria Navajas Navarro, Björn Niere, Stephen Parnell, Roel Potting, Trond Rafoss, Vittorio Rossi, Gregor Urek, Ariena Van Bruggen, Wopke Van Der Werf, Jonathan West, Stephan Winter, Olivier Pruvost, Svetla Kozelska, Irene Munoz Guajardo, Claude Bragard

Source: EFSA Journal, Vol 15, Iss 6, Pp n/a-n/a (2017)

Subject Terms: Citrus junos, yuzu, Xanthomonas citri pv. citri, Xanthomonas citri pv. aurantifolii, citrus bacterial canker, fruit pathway, Nutrition. Foods and food supply, TX341-641, Chemical technology, TP1-1185

File Description: electronic resource

Relation: https://doaj.org/toc/1831-4732

Access URL: https://doaj.org/article/c5a0214ec3d645259c00edfbedc29119

A novel multilocus variable number tandem repeat analysis typing scheme for African phylotype III strains of the Ralstonia solanacearum species complex

Authors: Santatra Ravelomanantsoa, Isabelle Robène, Frédéric Chiroleu, Fabien Guérin, Stéphane Poussier, Olivier Pruvost, Philippe Prior

Source: PeerJ, Vol 4, p e1949 (2016)

Subject Terms: Ralstonia solanacearum species complex, African phylotype III, MLVA, MLST, Medicine, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://peerj.com/articles/1949.pdf; https://peerj.com/articles/1949/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/53f64e46b80d4a4badfc4f6fbfa507a4