Human cells contain myriad excised linear intron RNAs with links to gene regulation and potential utility as biomarkers.

Authors: Yao, Jun¹, Xu, Hengyi¹, Ferrick-Kiddie, Elizabeth A.¹, Nottingham, Ryan M.¹, Wu, Douglas C.¹, Ares Jr, Manuel², Lambowitz, Alan M.¹, lambowitz@austin.utexas.edu

Source: PLoS Genetics; 9/26/2024, Vol. 20 Issue 9, p1-48, 48p

Broad role for YBX1 in defining the small noncoding RNA composition of exosomes

Authors: Shurtleff, Matthew J., Yao, Jun, Qin, Yidan, Nottingham, Ryan M., Temoche-Diaz, Morayma M., Schekman, Randy, Lambowitz, Alan M.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2017 Oct . 114(43), E8987-E8995.

Access URL: https://www.jstor.org/stable/26488630

Simultaneous sequencing of coding and noncoding RNA reveals a human transcriptome dominated by a small number of highly expressed noncoding genes

Authors: Boivin, Vincent, Deschamps-Francoeur, Gabrielle, Couture, Sonia, Nottingham, Ryan M., Bouchard-Bourelle, Philia, Lambowitz, Alan M., Scott, Michelle S., Abou-Elela, Sherif

Source: RNA. 24(7):950-965

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN616447864&indx=1&recIds=ETOCRN616447864

DUSP11 activity on triphosphorylated transcripts promotes Argonaute association with noncanonical viral microRNAs and regulates steady-state levels of cellular noncoding RNAs

Authors: Burke, James M., Kincaid, Rodney P., Nottingham, Ryan M., Lambowitz, Alan M., Sullivan, Christopher S.

Source: Genes & development. 30(18):2076-2092

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN608490302&indx=1&recIds=ETOCRN608490302

RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase

Authors: Nottingham, Ryan M., Wu, Douglas C., Qin, Yidan, Yao, Jun, Hunicke-Smith, Scott, Lambowitz, Alan M.

Source: RNA. 22(4):597-613

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN605626577&indx=1&recIds=ETOCRN605626577

High-throughput sequencing of human plasma RNA by using thermostable group II intron reverse transcriptases

Authors: Qin, Yidan, Yao, Jun, Wu, Douglas C., Nottingham, Ryan M., Mohr, Sabine, Hunicke-Smith, Scott, Lambowitz, Alan M.

Source: RNA. 22(1):111-128

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN604679472&indx=1&recIds=ETOCRN604679472

Measuring Rab GTPase-Activating Protein (GAP) Activity in Live Cells and Extracts

Authors: Nottingham, Ryan M., Pfeffer, Suzanne R.

Source: Methods in molecular biology. 1298:61-72

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN603784687&indx=1&recIds=ETOCRN603784687

RUTBC2 Protein, a Rab9A Effector and GTPase-activating Protein for Rab36

Authors: Nottingham, Ryan M., Pusapati, Ganesh V., Ganley, Ian G., Barr, Francis A., Lambright, David G., Pfeffer, Suzanne R.

Source: In Journal of Biological Chemistry 29 June 2012 287(27):22740-22748

Defining the Boundaries: Rab GEFs and GAPs

Authors: Nottingham, Ryan M., Pfeffer, Suzanne R.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2009 Aug . 106(34), 14185-14186.

Access URL: https://www.jstor.org/stable/40484394

RUTBC1 Protein, a Rab9A Effector That Activates GTP Hydrolysis by Rab32 and Rab33B Proteins

Authors: Nottingham, Ryan M., Ganley, Ian G., Barr, Francis A., Lambright, David G., Pfeffer, Suzanne R.

Source: In Journal of Biological Chemistry 23 September 2011 286(38):33213-33222

Team Effort by TRAPP Forces a Nucleotide Fumble

Authors: Nottingham, Ryan M., Pfeffer, Suzanne R.

Source: In Cell 2008 133(7):1141-1143

Arg-tRNA synthetase links inflammatory metabolism to RNA splicing and nuclear trafficking via SRRM2

Authors: Cui, Haissi, Diedrich, Jolene K., Wu, Douglas C., Lim, Justin J., Nottingham, Ryan M., Moresco, James J., Yates, John R., Blencowe, Benjamin J., Lambowitz, Alan M., Schimmel, Paul

Source: Nature Cell Biology; April 2023, Vol. 25 Issue: 4 p592-603, 12p

BCDIN3D regulates tRNA^His 3’ fragment processing.

Authors: Reinsborough, Calder W.¹, Ipas, Hélène¹, Abell, Nathan S.^1,2, Nottingham, Ryan M.¹, Yao, Jun¹, Devanathan, Sravan K.¹, Shelton, Samantha B.¹, Lambowitz, Alan M.¹, Xhemalçe, Blerta¹, b.xhemalce@austin.utexas.edu

Source: PLoS Genetics; 7/22/2019, Vol. 15 Issue 7, p1-20, 20p

High-grade ovarian cancer associated H/ACA snoRNAs promote cancer cell proliferation and survival.

Authors: Faucher-Giguère, Laurence, Roy, Audrey, Deschamps-Francoeur, Gabrielle, Couture, Sonia, Nottingham, Ryan M., Lambowitz, Alan M., Scott, Michelle S., Elela, Sherif Abou

Source: NAR Cancer; Mar2022, Vol. 4 Issue 1, p1-18, 18p

Identification of protein-protected mRNA fragments and structured excised intron RNAs in human plasma by TGIRT-seq peak calling.

Authors: Jun Yao, Wu, Douglas C., Nottingham, Ryan M., Lambowitz, Alan M.

Source: eLife; 9/25/2020, p1-41, 41p

DUSP11 activity on triphosphorylated transcripts promotes Argonaute association with noncanonical viral microRNAs and regulates steady-state levels of cellular noncoding RNAs.

Authors: Nottingham, Ryan M.^1,2,3, Lambowitz, Alan M.^1,2,3, Burke, James M.^1,2,3,4, Kincaid, Rodney P.^1,2,3,4, Sullivan, Christopher S.^1,2,3,4

Source: Genes & Development; 9/15/2016, Vol. 30 Issue 18, p2076-2092, 17p

Publisher Correction: Arg-tRNA synthetase links inflammatory metabolism to RNA splicing and nuclear trafficking via SRRM2

Authors: Cui, Haissi, Diedrich, Jolene K., Wu, Douglas C., Lim, Justin J., Nottingham, Ryan M., Moresco, James J., Yates, John R., Blencowe, Benjamin J., Lambowitz, Alan M., Schimmel, Paul

Source: Nature Cell Biology; July 2023, Vol. 25 Issue: 7 p1073-1073, 1p

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