Comprehensive genomic profiling of primary bladder mucinous adenocarcinoma, a rare genitourinary cancer: A case report

Authors: Shinkuro Yamamoto, Shingo Ashida, Tomoya Nao, Kaho Murakami, Ryohei Iga, Tsutomu Shimamoto, Hideo Fukuhara, Nobutaka Shimizu, Satoshi Fukata, Atsushi Kurabayashi, Takashi Karashima, Keiji Inoue

Source: Urology Case Reports, Vol 58, Iss , Pp 102892- (2025)

Subject Terms: Bladder cancer, Genomic profiling, Mucinous adenocarcinoma, Diseases of the genitourinary system. Urology, RC870-923

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2214442024002468; https://doaj.org/toc/2214-4420

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Autologous rectus abdominis fascia sling surgery following unsuccessful synthetic midurethral sling

Authors: Yoshitaka Kurano, Nobutaka Shimizu, Rie Yoshimura, Ryohei Iga, Kaya Atagi, Tomoya Nao, Hideo Fukuhara, Satoshi Fukata, Shingo Ashida, Keiji Inoue

Source: IJU Case Reports, Vol 7, Iss 3, Pp 259-261 (2024)

Subject Terms: fascia, internal urethral sphincter, midurethral sling, rectus abdominis, urinary stress incontinence, Diseases of the genitourinary system. Urology, RC870-923

File Description: electronic resource

Relation: https://doaj.org/toc/2577-171X

Access URL: https://doaj.org/article/2481e4c6076a4549b668b4ed05e8a2ac

Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport

Authors: Satoshi Watanabe, Yoshiaki Kise, Kento Yonezawa, Mariko Inoue, Nobutaka Shimizu, Osamu Nureki, Kenji Inaba

Source: Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/07a06575a85540998ba2c1a4f3a18c44

Significantly High Melting Temperature of Homopolymer Crystals Obtained in a Poly(l‑Lactic Acid)/Poly(d‑Lactic Acid) (50/50) Blend

Authors: Neimatallah Hosni Mohammed Mahmoud, Hideaki Takagi, Nobutaka Shimizu, Noriyuki Igarashi, Shinichi Sakurai

Source: ACS Omega, Vol 8, Iss 43, Pp 40482-40493 (2023)

Subject Terms: Chemistry, QD1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2470-1343

Access URL: https://doaj.org/article/9eb3437251b3485ca68bf074ba15b40d

Identification and characterization of endo-α-, exo-α-, and exo-β-d-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria

Authors: Michiko Shimokawa, Akihiro Ishiwata, Toma Kashima, Chiho Nakashima, Jiaman Li, Riku Fukushima, Naomi Sawai, Miku Nakamori, Yuuki Tanaka, Azusa Kudo, Sae Morikami, Nao Iwanaga, Genki Akai, Nobutaka Shimizu, Takatoshi Arakawa, Chihaya Yamada, Kanefumi Kitahara, Katsunori Tanaka, Yukishige Ito, Shinya Fushinobu, Kiyotaka Fujita

Source: Nature Communications, Vol 14, Iss 1, Pp 1-16 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/1607527fcc1847c28b2a04b62fd10e51

SAXS/WAXS data of conformationally flexible ribose binding protein

Authors: Jagrity Choudhury, Kento Yonezawa, Anu Anu, Nobutaka Shimizu, Barnali Chaudhuri

Source: Data in Brief, Vol 52, Iss , Pp 109932- (2024)

Subject Terms: Small-angle X-ray scattering, Wide-angle X-ray scattering, Ribose binding protein, Conformational flexibility, Computer applications to medicine. Medical informatics, R858-859.7, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2352340923009642; https://doaj.org/toc/2352-3409

Access URL: https://doaj.org/article/d84cfec05ab04d2fbd9a8006c881220a

Targeting transglutaminase 2 mediated exostosin glycosyltransferase 1 signaling in liver cancer stem cells with acyclic retinoid

Authors: Xian-Yang Qin, Yutaka Furutani, Kento Yonezawa, Nobutaka Shimizu, Miyuki Kato-Murayama, Mikako Shirouzu, Yali Xu, Yumiko Yamano, Akimori Wada, Luc Gailhouste, Rajan Shrestha, Masataka Takahashi, Jeffrey W. Keillor, Ting Su, Wenkui Yu, Shinya Fujii, Hiroyuki Kagechika, Naoshi Dohmae, Yohei Shirakami, Masahito Shimizu, Takahiro Masaki, Tomokazu Matsuura, Harukazu Suzuki, Soichi Kojima

Source: Cell Death and Disease, Vol 14, Iss 6, Pp 1-15 (2023)

Subject Terms: Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/2041-4889

Access URL: https://doaj.org/article/6988d4bd40ae412bb6f755ac1f920c89

MOLASS: Software for automatic processing of matrix data obtained from small-angle X-ray scattering and UV–visible spectroscopy combined with size-exclusion chromatography

Authors: Kento Yonezawa, Masatsuyo Takahashi, Keiko Yatabe, Yasuko Nagatani, Nobutaka Shimizu

Source: Biophysics and Physicobiology, Vol 20 (2023)

Subject Terms: sec-saxs, automatic data analysis, concentration dependence, moore-penrose pseudo-inverse matrix, Biology (General), QH301-705.5, Physiology, QP1-981, Physics, QC1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2189-4779

Access URL: https://doaj.org/article/f537fdbce89044659691093acb8b4109

Author Correction: Identification and characterization of endo-α- exo-α-, and exo-β-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria

Authors: Michiko Shimokawa, Akihiro Ishiwata, Toma Kashima, Chiho Nakashima, Jiaman Li, Riku Fukushima, Naomi Sawai, Miku Nakamori, Yuuki Tanaka, Azusa Kudo, Sae Morikami, Nao Iwanaga, Genki Akai, Nobutaka Shimizu, Takatoshi Arakawa, Chihaya Yamada, Kanefumi Kitahara, Katsunori Tanaka, Yukishige Ito, Shinya Fushinobu, Kiyotaka Fujita

Source: Nature Communications, Vol 14, Iss 1, Pp 1-1 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/69953b1815b54d6b97c4b5c6481a6c99

Stress–Strain and Stress-Relaxation Behaviors of Solution-Coated Layers Composed of Block Copolymers Mixed with Tackifiers

Authors: Takahiro Doi, Hideaki Takagi, Nobutaka Shimizu, Noriyuki Igarashi, Shinichi Sakurai

Source: ACS Omega, Vol 6, Iss 27, Pp 17299-17313 (2021)

Subject Terms: Chemistry, QD1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2470-1343

Access URL: https://doaj.org/article/4fdd454360374a6cabb9729869472c40

Renal abscess with bacteremia caused by extended-spectrum β-lactamase-producing Escherichia coli: a case report

Authors: Hiroki Kitaoka, Jun Inatomi, Hayato Chikai, Keiko Watanabe, Tadayuki Kumagai, Ayako Masui, Nobutaka Shimizu

Source: BMC Pediatrics, Vol 20, Iss 1, Pp 1-5 (2020)

Subject Terms: Urinary tract infection, Renal abscess, Extended-spectrum β-lactamase, Pediatrics, Case report, RJ1-570

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12887-020-02366-5; https://doaj.org/toc/1471-2431

Access URL: https://doaj.org/article/d50f1dd83d6c4d2d813708695d27262d

Supramolecular double-stranded Archimedean spirals and concentric toroids

Authors: Norihiko Sasaki, Mathijs F. J. Mabesoone, Jun Kikkawa, Tomoya Fukui, Nobutaka Shioya, Takafumi Shimoaka, Takeshi Hasegawa, Hideaki Takagi, Rie Haruki, Nobutaka Shimizu, Shin-ichi Adachi, E. W. Meijer, Masayuki Takeuchi, Kazunori Sugiyasu

Source: Nature Communications, Vol 11, Iss 1, Pp 1-9 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/a442c4f7437042cd98659f24350cd6cc

Short-Distance Intermolecular Correlations of Mono- and Disaccharides in Condensed Solutions: Bulky Character of Trehalose

Authors: Mitsuhiro Hirai, Satoshi Ajito, Tatsuo Iwasa, Durige Wen, Noriyuki Igarashi, Nobutaka Shimizu

Source: ACS Omega, Vol 5, Iss 19, Pp 10815-10825 (2020)

Subject Terms: Chemistry, QD1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2470-1343

Access URL: https://doaj.org/article/53045910bbbc4a2088247d5a69c0278c

Supramolecular copolymerization driven by integrative self-sorting of hydrogen-bonded rosettes

Authors: Keisuke Aratsu, Rika Takeya, Brian R. Pauw, Martin J. Hollamby, Yuichi Kitamoto, Nobutaka Shimizu, Hideaki Takagi, Rie Haruki, Shin-ichi Adachi, Shiki Yagai

Source: Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/8c84589af5cc42c8a83f88eaca1994ea

Optimal Mutant Model of Human S100A3 Protein Citrullinated at Arg51 by Peptidylarginine Deiminase Type III and Its Solution Structural Properties

Authors: Kenji Ite, Kento Yonezawa, Kenichi Kitanishi, Nobutaka Shimizu, Masaki Unno

Source: ACS Omega, Vol 5, Iss 8, Pp 4032-4042 (2020)

Subject Terms: Chemistry, QD1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2470-1343

Access URL: https://doaj.org/article/cee82fbc25f645ceae9624a42efa1044

Elastic local buckling strength and maximum strength of cold‐formed steel members with different plate widths on adjacent plate elements

Authors: Tomoki Kobashi, Kikuo Ikarashi, Nobutaka Shimizu

Source: Japan Architectural Review, Vol 2, Iss 4, Pp 465-476 (2019)

Subject Terms: cold‐formed steel, elastic local buckling, post‐buckling behavior, rectangular sections, Architecture, NA1-9428, Architectural engineering. Structural engineering of buildings, TH845-895

File Description: electronic resource

Relation: https://doaj.org/toc/2475-8876

Access URL: https://doaj.org/article/5c9023b09294472b80024c03fd3c4ad0

One-shot preparation of topologically chimeric nanofibers via a gradient supramolecular copolymerization

Authors: Yuichi Kitamoto, Ziyan Pan, Deepak D. Prabhu, Atsushi Isobe, Tomonori Ohba, Nobutaka Shimizu, Hideaki Takagi, Rie Haruki, Shin-ichi Adachi, Shiki Yagai

Source: Nature Communications, Vol 10, Iss 1, Pp 1-10 (2019)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/b10413e67c9440f08b312b53b341e35d

Structure of MHC class I-like MILL2 reveals heparan-sulfate binding and interdomain flexibility

Authors: Mizuho Kajikawa, Toyoyuki Ose, Yuko Fukunaga, Yuki Okabe, Naoki Matsumoto, Kento Yonezawa, Nobutaka Shimizu, Simon Kollnberger, Masanori Kasahara, Katsumi Maenaka

Source: Nature Communications, Vol 9, Iss 1, Pp 1-9 (2018)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/3341d66dc08e4602846e819f01a70df7

Structural basis for tRNA-dependent cysteine biosynthesis

Authors: Meirong Chen, Koji Kato, Yume Kubo, Yoshikazu Tanaka, Yuchen Liu, Feng Long, William B. Whitman, Pascal Lill, Christos Gatsogiannis, Stefan Raunser, Nobutaka Shimizu, Akira Shinoda, Akiyoshi Nakamura, Isao Tanaka, Min Yao

Source: Nature Communications, Vol 8, Iss 1, Pp 1-12 (2017)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/c9bee99cff4f4579934ca24282231251

Mechanism of Catalytic Microtubule Depolymerization via KIF2-Tubulin Transitional Conformation

Authors: Tadayuki Ogawa, Shinya Saijo, Nobutaka Shimizu, Xuguang Jiang, Nobutaka Hirokawa

Source: Cell Reports, Vol 20, Iss 11, Pp 2626-2638 (2017)

Subject Terms: microtubule, catalytic depolymerization, kinesin-13, KIF2, MCAK, ATP hydrolysis, molecular motor, microtubule destabilizer, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S221112471731207X; https://doaj.org/toc/2211-1247

Access URL: https://doaj.org/article/6514854419fa4b7883574dd1541c8364